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Search of human proteins with 17572807
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17572807 ropporin 1-like [Homo sapiens]
(230 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17572807 ropporin 1-like [Homo sapiens] 474 e-134
gi|21359920 ropporin [Homo sapiens] 161 5e-40
gi|59891409 ropporin, rhophilin associated protein 1B [Homo sapi... 155 2e-38
gi|4758958 cAMP-dependent protein kinase, regulatory subunit alp... 35 0.070
gi|32189392 peroxiredoxin 2 isoform a [Homo sapiens] 33 0.16
gi|47132585 cAMP-dependent protein kinase, regulatory subunit be... 33 0.20
gi|115527120 nebulin [Homo sapiens] 30 1.3
gi|225637489 hypothetical protein LOC54777 [Homo sapiens] 30 1.7
gi|239752518 PREDICTED: similar to leucine rich repeat containin... 30 1.7
gi|22027471 neuronal PAS domain protein 2 [Homo sapiens] 28 5.0
gi|109134340 tubulin tyrosine ligase-like family, member 3 [Homo... 28 5.0
gi|24797118 calcium-binding tyrosine phosphorylation-regulated p... 28 5.0
gi|24797116 calcium-binding tyrosine phosphorylation-regulated p... 28 5.0
gi|24797108 calcium-binding tyrosine phosphorylation-regulated p... 28 5.0
gi|24797112 calcium-binding tyrosine phosphorylation-regulated p... 28 5.0
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 28 6.6
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 28 6.6
gi|50658071 phosphodiesterase 4D interacting protein isoform 5 [... 28 6.6
gi|24797114 calcium-binding tyrosine phosphorylation-regulated p... 28 6.6
gi|117414152 transcription factor 19 [Homo sapiens] 28 8.6
gi|117414156 transcription factor 19 [Homo sapiens] 28 8.6
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 28 8.6
gi|45267821 schlafen-like 1 [Homo sapiens] 28 8.6
>gi|17572807 ropporin 1-like [Homo sapiens]
Length = 230
Score = 474 bits (1221), Expect = e-134
Identities = 230/230 (100%), Positives = 230/230 (100%)
Query: 1 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 60
MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR
Sbjct: 1 MPLPDTMFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDR 60
Query: 61 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 120
MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC
Sbjct: 61 MEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPC 120
Query: 121 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 180
ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS
Sbjct: 121 ENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDS 180
Query: 181 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH 230
DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH
Sbjct: 181 DVSPLETESYLASLKENIDARKNGMIGLSDFFFPKRKLLESIENSEDVGH 230
>gi|21359920 ropporin [Homo sapiens]
Length = 212
Score = 161 bits (407), Expect = 5e-40
Identities = 82/206 (39%), Positives = 126/206 (61%), Gaps = 3/206 (1%)
Query: 15 IPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDRMEMPTATQKTDTGL 74
IPPELP +LK+F KAAIR QP D+++W+A YF ALSRG+ PV++R E + + L
Sbjct: 10 IPPELPKMLKEFAKAAIRVQPQDLIQWAADYFEALSRGETPPVRERSERVALCNRAE--L 67
Query: 75 TQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPCENKIKWINFLALGC 134
T LLK+LH Q + + +L Q WK + LP + F +++ + +I+W+ FLAL C
Sbjct: 68 TPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWLKFLALAC 127
Query: 135 SMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDSDVSPLETESYLASL 194
S LG ++ LK +CE+L+ D GG RIPF TF ++Y Y+A++D ++S L +
Sbjct: 128 SALGVTITKTLKIVCEVLSCDHNGGSPRIPFSTFQFLYTYIAKVDGEISASHVSRMLNYM 187
Query: 195 KENIDARKNGMIGLSDFFFPKRKLLE 220
++ + +G+I ++DF R LE
Sbjct: 188 EQEV-IGPDGIITVNDFTQNPRVQLE 212
>gi|59891409 ropporin, rhophilin associated protein 1B [Homo
sapiens]
Length = 212
Score = 155 bits (393), Expect = 2e-38
Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 3/206 (1%)
Query: 15 IPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDRMEMPTATQKTDTGL 74
IPPELP +LK+F KAAIR QP D+++W A YF ALSRG+ PV++R E + L
Sbjct: 10 IPPELPKMLKEFAKAAIRAQPQDLIQWGADYFEALSRGETPPVRERSERVALCNWAE--L 67
Query: 75 TQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPCENKIKWINFLALGC 134
T LLK+LH Q + + +L Q WK + LP + F +++ + +I+W+ FLAL C
Sbjct: 68 TPELLKILHSQVAGRLIIRAEELAQMWKVVNLPTDLFNSVMNVGRFTEEIEWLKFLALAC 127
Query: 135 SMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDSDVSPLETESYLASL 194
S LG ++ LK +CE+L+ D GG RIPF TF ++Y Y+A +D ++ L +
Sbjct: 128 SALGVTITKTLKIVCEVLSCDHNGGLPRIPFSTFQFLYTYIAEVDGEICASHVSRMLNYI 187
Query: 195 KENIDARKNGMIGLSDFFFPKRKLLE 220
++ + +G+I ++DF R LE
Sbjct: 188 EQEV-IGPDGLITVNDFTQNPRVWLE 212
>gi|4758958 cAMP-dependent protein kinase, regulatory subunit
alpha 2 [Homo sapiens]
Length = 404
Score = 34.7 bits (78), Expect = 0.070
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 13 IHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRG-DPLPVKDRMEMPTATQKTD 71
I IPP L ++L+ +T +R QP D++ ++ YF+ L P V +P AT +
Sbjct: 4 IQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREARAPASV-----LPAATPRQS 58
Query: 72 TG 73
G
Sbjct: 59 LG 60
>gi|32189392 peroxiredoxin 2 isoform a [Homo sapiens]
Length = 198
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 128 NFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDSDVSPLET 187
+F LGC +LG S+++ HL I T EGG + + V R RL D L+T
Sbjct: 64 DFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTR---RLSEDYGVLKT 120
Query: 188 ESYLA 192
+ +A
Sbjct: 121 DEGIA 125
>gi|47132585 cAMP-dependent protein kinase, regulatory subunit
beta 2 [Homo sapiens]
Length = 418
Score = 33.1 bits (74), Expect = 0.20
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 13 IHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSR 51
I IP L ++L+ FT +R QPAD+L ++ +F+ L +
Sbjct: 3 IEIPAGLTELLQGFTVEVLRHQPADLLEFALQHFTRLQQ 41
>gi|115527120 nebulin [Homo sapiens]
Length = 6669
Score = 30.4 bits (67), Expect = 1.3
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 12 QIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDRMEMPTATQKTD 71
+IH+ P+ PDIL+ + +Q L W AL +G LPV D + + A D
Sbjct: 2247 KIHVMPDTPDILQAKQNQTLYSQKLYKLGWE----EALKKGYDLPV-DAISVQLAKASRD 2301
Query: 72 TGLTQGLLKVLHKQC-HHKRYVELTD 96
+ KQ HH + L D
Sbjct: 2302 IASDYKYKQGYRKQLGHHVGFRSLQD 2327
>gi|225637489 hypothetical protein LOC54777 [Homo sapiens]
Length = 2441
Score = 30.0 bits (66), Expect = 1.7
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 46 FSALSRGDPLPVKDRMEMPTATQKTDTGLTQGLLKVLHK-QCHHKRYVEL-TDLEQK--- 100
F ALS+ R + AT T + LL++ H+ +C + L +EQ+
Sbjct: 1810 FLALSQSCSASETMRDVLLAATANTSSSQLAALLQLQHQLRCQDRTTTSLGARVEQRLAA 1869
Query: 101 ----WKNLCLPKEKFKALLQLDPCENKIKWINFLAL 132
W+NLC+ ++ F L ++ P WI FL L
Sbjct: 1870 VSKAWQNLCVTEQHFNLLNEMPP----TFWILFLHL 1901
>gi|239752518 PREDICTED: similar to leucine rich repeat containing
50, partial [Homo sapiens]
Length = 489
Score = 30.0 bits (66), Expect = 1.7
Identities = 35/139 (25%), Positives = 48/139 (34%), Gaps = 28/139 (20%)
Query: 83 HKQCHHKRYVELT--------DLEQKWKNLCLPKEKFKALLQLDPCENKIKWINFLALGC 134
HKQ K LT DL+Q+ N+ +++ + DPC+ ++
Sbjct: 154 HKQSLLKEKKRLTINNVARQWDLQQRVANIATNEDRKDSDSPQDPCQIDGSTLSAFPEET 213
Query: 135 SMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDSDVSPLETESYLASL 194
L LN AL+ L I T YL +D D L L SL
Sbjct: 214 GPLDSGLNNALQGLSVIDT--------------------YLVEVDGDTLSLYGSGALESL 253
Query: 195 KENIDARKNGMIGLSDFFF 213
N + GMI F F
Sbjct: 254 DRNWSVQTAGMITTVSFTF 272
>gi|22027471 neuronal PAS domain protein 2 [Homo sapiens]
Length = 824
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 63 MPTATQKTD-TGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALL 115
+P T+K D T + + ++ L K E+ D++Q WK L E+F L+
Sbjct: 36 LPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLM 89
>gi|109134340 tubulin tyrosine ligase-like family, member 3 [Homo
sapiens]
Length = 772
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 107 PKEKFKALLQLDPCENKIKWINFLALGCSMLGGS 140
P +F L LDP NK K + +L L +GGS
Sbjct: 723 PLLRFPTALVLDPTPNKKKQVKYLGLDSIAVGGS 756
>gi|24797118 calcium-binding tyrosine phosphorylation-regulated
protein isoform e [Homo sapiens]
Length = 221
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/48 (29%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 15 IPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALS--RGD-PLPVKD 59
+P L +L+ ++A ++T P+++ +++A YF L+ RG+ + +KD
Sbjct: 10 VPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKD 57
>gi|24797116 calcium-binding tyrosine phosphorylation-regulated
protein isoform c [Homo sapiens]
Length = 379
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/48 (29%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 15 IPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALS--RGD-PLPVKD 59
+P L +L+ ++A ++T P+++ +++A YF L+ RG+ + +KD
Sbjct: 10 VPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKD 57
>gi|24797108 calcium-binding tyrosine phosphorylation-regulated
protein isoform a [Homo sapiens]
Length = 493
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/48 (29%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 15 IPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALS--RGD-PLPVKD 59
+P L +L+ ++A ++T P+++ +++A YF L+ RG+ + +KD
Sbjct: 10 VPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKD 57
>gi|24797112 calcium-binding tyrosine phosphorylation-regulated
protein isoform c [Homo sapiens]
Length = 379
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/48 (29%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 15 IPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALS--RGD-PLPVKD 59
+P L +L+ ++A ++T P+++ +++A YF L+ RG+ + +KD
Sbjct: 10 VPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELTMYRGNTTMDIKD 57
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 28.1 bits (61), Expect = 6.6
Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 34/158 (21%)
Query: 18 ELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDRMEMPTATQKTDTGLTQG 77
++ +LK K + +++ W G L + M + Q L
Sbjct: 1893 QVDSVLKHVKKHLPKAHVKELISWLVGQEFELEK-----------MESICQARAKELEDS 1941
Query: 78 LLKVLHKQCHHKRYVE-LTDLEQKWKNLCLP--------------KEKFKALLQLDPCEN 122
L ++L Q H+ + LT+ E+KWK + P +E+F+++ QL+ N
Sbjct: 1942 LQQLLRLQDDHRNLRKWLTNQEEKWKGMEEPGEKTELFCQALARKREQFESVAQLN---N 1998
Query: 123 KIKWINF-----LALGCSMLGGSLNTALKHLCEILTDD 155
+K F + + + L T L+ L EI +D
Sbjct: 1999 SLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEIEEED 2036
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 28.1 bits (61), Expect = 6.6
Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 34/158 (21%)
Query: 18 ELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDRMEMPTATQKTDTGLTQG 77
++ +LK K + +++ W G L + M + Q L
Sbjct: 1893 QVDSVLKHVKKHLPKAHVKELISWLVGQEFELEK-----------MESICQARAKELEDS 1941
Query: 78 LLKVLHKQCHHKRYVE-LTDLEQKWKNLCLP--------------KEKFKALLQLDPCEN 122
L ++L Q H+ + LT+ E+KWK + P +E+F+++ QL+ N
Sbjct: 1942 LQQLLRLQDDHRNLRKWLTNQEEKWKGMEEPGEKTELFCQALARKREQFESVAQLN---N 1998
Query: 123 KIKWINF-----LALGCSMLGGSLNTALKHLCEILTDD 155
+K F + + + L T L+ L EI +D
Sbjct: 1999 SLKEYGFTEEEEIIMEATCLMDRYQTLLRQLSEIEEED 2036
>gi|50658071 phosphodiesterase 4D interacting protein isoform 5
[Homo sapiens]
Length = 1132
Score = 28.1 bits (61), Expect = 6.6
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 54 PLPVKDRMEM----PTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLC 105
P+PVK + P+ T +G LK L+K +EL+DL++ W +LC
Sbjct: 312 PIPVKSSLPGAKPGPSMTDGVSSGFLNRSLKPLYKT-PVSYPLELSDLQELWDDLC 366
>gi|24797114 calcium-binding tyrosine phosphorylation-regulated
protein isoform b [Homo sapiens]
Length = 475
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 15 IPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALS 50
+P L +L+ ++A ++T P+++ +++A YF L+
Sbjct: 10 VPYGLKTLLEGISRAVLKTNPSNINQFAAAYFQELT 45
>gi|117414152 transcription factor 19 [Homo sapiens]
Length = 345
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 105 CLPKEKFKALLQLDPCENKIKWINFLALGCSM 136
CLP+E+ A +Q D C+ W + +GCS+
Sbjct: 298 CLPQEETVAWVQCDGCD---VWFHVACVGCSI 326
>gi|117414156 transcription factor 19 [Homo sapiens]
Length = 345
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 105 CLPKEKFKALLQLDPCENKIKWINFLALGCSM 136
CLP+E+ A +Q D C+ W + +GCS+
Sbjct: 298 CLPQEETVAWVQCDGCD---VWFHVACVGCSI 326
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 27.7 bits (60), Expect = 8.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 182 VSPLETESYLASLKENIDARKNG-------MIGLSDFFFPKRKLLESIENSED 227
+SP + YL +KE +A KNG + L+ FP K+L I+ ++
Sbjct: 13 LSPEQAAHYLRYVKEAKEATKNGDLEEAFKLFNLAKDIFPNEKVLSRIQKIQE 65
>gi|45267821 schlafen-like 1 [Homo sapiens]
Length = 407
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 73 GLTQGLLKV--LHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQ 116
G QG L + + C + VEL LE+K K L + KE+ + LQ
Sbjct: 350 GSIQGPLSASAIQEWCRQRWLVELGKLEEKMKALMMEKEQLQQQLQ 395
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,482,590
Number of Sequences: 37866
Number of extensions: 423630
Number of successful extensions: 922
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 32
length of query: 230
length of database: 18,247,518
effective HSP length: 99
effective length of query: 131
effective length of database: 14,498,784
effective search space: 1899340704
effective search space used: 1899340704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.