Guide to the Human Genome
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Name: ROPN1L Sequence: fasta or formatted (230aa) NCBI GI: 17572807
Description:

ropporin 1-like

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         14           2
 C cysteine            2.6          6           1
 D aspartate           6.5         15           2
 E glutamate           6.1         14           1
 F phenylalanine       4.3         10           3
 G glycine             5.2         12           2
 H histidine           2.6          6           2
 I isoleucine          4.8         11           1
 K lysine              8.7         20           1
 L leucine            13.9         32           2
 M methionine          2.6          6           1
 N asparagine          3.0          7           1
 P proline             7.0         16           2
 Q glutamine           3.9          9           2
 R arginine            4.3         10           1
 S serine              5.7         13           1
 T threonine           5.7         13           1
 V valine              3.0          7           1
 W tryptophan          1.3          3           1
 Y tyrosine            2.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ropporin 1-like 
ROPN1                 0.303   ropporin 
ROPN1B                0.290   ropporin, rhophilin associated protein 1B 
PRKAR2A               0.022   cAMP-dependent protein kinase, regulatory subunit alp...
PRDX2                 0.018   peroxiredoxin 2 isoform a 
PRKAR2B               0.018   cAMP-dependent protein kinase, regulatory subunit be...
NEB                   0.011   nebulin 
C10orf92              0.011   hypothetical protein LOC54777 
LOC654258             0.011   PREDICTED: similar to leucine rich repeat containin...
NPAS2                 0.007   neuronal PAS domain protein 2 
TTLL3                 0.007   tubulin tyrosine ligase-like family, member 3 [Homo...
CABYR                 0.007   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.007   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.007   calcium-binding tyrosine phosphorylation-regulated p...
CABYR                 0.007   calcium-binding tyrosine phosphorylation-regulated p...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.007   spectrin repeat containing, nuclear envelope 2 isof...
PDE4DIP               0.007   phosphodiesterase 4D interacting protein isoform 5 [...
CABYR                 0.007   calcium-binding tyrosine phosphorylation-regulated p...
TCF19                 0.007   transcription factor 19 
TCF19                 0.007   transcription factor 19 
ERCC6L                0.007   excision repair protein ERCC6-like 
SLFNL1                0.007   schlafen-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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