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Search of human proteins with 17402896
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
(376 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens] 746 0.0
gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens] 265 4e-71
gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens] 117 2e-26
gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens] 115 5e-26
gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens] 115 5e-26
gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens] 101 1e-21
gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens] 94 2e-19
gi|153946430 X-ray repair cross complementing protein 3 [Homo sa... 92 6e-19
gi|153946427 X-ray repair cross complementing protein 3 [Homo sa... 92 6e-19
gi|4885659 X-ray repair cross complementing protein 3 [Homo sapi... 92 6e-19
gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens] 73 4e-13
gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens] 71 1e-12
gi|4885657 X-ray repair cross complementing protein 2 [Homo sapi... 52 1e-06
gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens] 50 3e-06
gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens] 40 0.003
gi|166235180 tetratricopeptide repeat domain 22 isoform 1 [Homo ... 31 1.6
gi|40806173 spastic paraplegia 7 isoform 2 [Homo sapiens] 30 2.7
gi|4507173 spastic paraplegia 7 isoform 1 [Homo sapiens] 30 2.7
gi|154350220 DNA polymerase iota [Homo sapiens] 30 3.5
gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens] 30 3.5
gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sap... 29 6.0
>gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
Length = 376
Score = 746 bits (1925), Expect = 0.0
Identities = 376/376 (100%), Positives = 376/376 (100%)
Query: 1 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET 60
MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET
Sbjct: 1 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET 60
Query: 61 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT 120
LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT
Sbjct: 61 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT 120
Query: 121 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHL 180
TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHL
Sbjct: 121 TEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHL 180
Query: 181 QLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI 240
QLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI
Sbjct: 181 QLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI 240
Query: 241 VDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPA 300
VDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPA
Sbjct: 241 VDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPA 300
Query: 301 LGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTE 360
LGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTE
Sbjct: 301 LGESWGHAATIRLIFHWDRKQRLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTE 360
Query: 361 GSLSTRKRSRDPEEEL 376
GSLSTRKRSRDPEEEL
Sbjct: 361 GSLSTRKRSRDPEEEL 376
>gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]
Length = 135
Score = 265 bits (678), Expect = 4e-71
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET 60
MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET
Sbjct: 1 MRGKTFRFEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALET 60
Query: 61 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT 120
LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT
Sbjct: 61 LQIIRRECLTNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSALDDILGGGVPLMKT 120
Query: 121 TEICGAPGVGKTQL 134
TEICGAPGVGKTQL
Sbjct: 121 TEICGAPGVGKTQL 134
>gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]
Length = 384
Score = 117 bits (292), Expect = 2e-26
Identities = 97/371 (26%), Positives = 158/371 (42%), Gaps = 52/371 (14%)
Query: 34 TAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQ 93
T ++ L + P EL K G+S E L ++ R C G
Sbjct: 26 TCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSA--------- 76
Query: 94 EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAG 153
+ + F+ T SALD+ L GGV TEI G PG GKTQ C+ +++ +P GG+ G
Sbjct: 77 DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEG 136
Query: 154 EAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRC 213
V+IDTE +F +R+V++A + ++ E + L S ++ +R
Sbjct: 137 AVVYIDTESAFSAERLVEIAESRF-------PRYFNTEEKLLLTS-------SKVHLYRE 182
Query: 214 RDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD-----DLSLRTRLLNGLAQQ 268
E+L ++ L + + ++LVI+D +A R + D +L R + L A
Sbjct: 183 LTCDEVLQRIESLEEEIISKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASS 241
Query: 269 MISLANNHRLAVILTNQMTTKID----------------------RNQALLVPALGESWG 306
+ LA + VILTNQ+TT + + ++ ALG +W
Sbjct: 242 LKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWS 301
Query: 307 HAATIRLIFHW-DRKQRLATLYKSPSQKECTVLFQIKPQGFRDTVVTSACSLQTEGSLST 365
H+ RLI + D ++R + KSP + ++ IK +G T Q E + +
Sbjct: 302 HSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEGLVLQETTFCSVTQAELNWAP 361
Query: 366 RKRSRDPEEEL 376
P E+L
Sbjct: 362 EILPPQPPEQL 372
>gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
Length = 350
Score = 115 bits (289), Expect = 5e-26
Identities = 91/340 (26%), Positives = 149/340 (43%), Gaps = 52/340 (15%)
Query: 34 TAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQ 93
T ++ L + P EL K G+S E L ++ R C G
Sbjct: 26 TCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSA--------- 76
Query: 94 EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAG 153
+ + F+ T SALD+ L GGV TEI G PG GKTQ C+ +++ +P GG+ G
Sbjct: 77 DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEG 136
Query: 154 EAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRC 213
V+IDTE +F +R+V++A + ++ E + L S ++ +R
Sbjct: 137 AVVYIDTESAFSAERLVEIAESRF-------PRYFNTEEKLLLTS-------SKVHLYRE 182
Query: 214 RDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD-----DLSLRTRLLNGLAQQ 268
E+L ++ L + + ++LVI+D +A R + D +L R + L A
Sbjct: 183 LTCDEVLQRIESLEEEIISKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASS 241
Query: 269 MISLANNHRLAVILTNQMTTKID----------------------RNQALLVPALGESWG 306
+ LA + VILTNQ+TT + + ++ ALG +W
Sbjct: 242 LKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWS 301
Query: 307 HAATIRLIFHW-DRKQRLATLYKSPSQKECTVLFQIKPQG 345
H+ RLI + D ++R + KSP + ++ IK +G
Sbjct: 302 HSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEG 341
>gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]
Length = 350
Score = 115 bits (289), Expect = 5e-26
Identities = 91/340 (26%), Positives = 149/340 (43%), Gaps = 52/340 (15%)
Query: 34 TAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCTALELLEQ 93
T ++ L + P EL K G+S E L ++ R C G
Sbjct: 26 TCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRACAPKMQTAYGIKAQRSA--------- 76
Query: 94 EHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAG 153
+ + F+ T SALD+ L GGV TEI G PG GKTQ C+ +++ +P GG+ G
Sbjct: 77 DFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATLPTNMGGLEG 136
Query: 154 EAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRC 213
V+IDTE +F +R+V++A + ++ E + L S ++ +R
Sbjct: 137 AVVYIDTESAFSAERLVEIAESRF-------PRYFNTEEKLLLTS-------SKVHLYRE 182
Query: 214 RDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD-----DLSLRTRLLNGLAQQ 268
E+L ++ L + + ++LVI+D +A R + D +L R + L A
Sbjct: 183 LTCDEVLQRIESLEEEIISKG-IKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASS 241
Query: 269 MISLANNHRLAVILTNQMTTKID----------------------RNQALLVPALGESWG 306
+ LA + VILTNQ+TT + + ++ ALG +W
Sbjct: 242 LKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWS 301
Query: 307 HAATIRLIFHW-DRKQRLATLYKSPSQKECTVLFQIKPQG 345
H+ RLI + D ++R + KSP + ++ IK +G
Sbjct: 302 HSVNTRLILQYLDSERRQILIAKSPLAPFTSFVYTIKEEG 341
>gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]
Length = 339
Score = 101 bits (251), Expect = 1e-21
Identities = 98/332 (29%), Positives = 149/332 (44%), Gaps = 44/332 (13%)
Query: 26 KLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPR-YAGTSESHKK 84
KL AGF T E + EL GIS+A+A + L E P + +E H++
Sbjct: 40 KLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILA----EAAKLVPMGFTTATEFHQR 95
Query: 85 CTALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQI 144
+ E+++ I T LD +L GG+ TE+ G GKTQ+C LAV Q+
Sbjct: 96 RS--EIIQ-------ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQL 146
Query: 145 PECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNI 204
P GG G+A++IDTEG+F +R++ +A E + + D LDN+
Sbjct: 147 PIDRGGGEGKAMYIDTEGTFRPERLLAVA----------------ERYGLSGSD-VLDNV 189
Query: 205 LSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD---DLSLRTRL 261
++ F T+LL Q + S+ L+IVD +R D +LS R
Sbjct: 190 -AYARAFNTDHQTQLLYQA----SAMMVESRYALLIVDSATALYRTDYSGRGELSARQMH 244
Query: 262 LNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLV----PALGESWGHAATIRLIFHW 317
L + ++ LA+ +AV++TNQ+ ++D P G HA+T RL
Sbjct: 245 LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 304
Query: 318 DR-KQRLATLYKSPSQKECTVLFQIKPQGFRD 348
R + R+ +Y SP E +F I G D
Sbjct: 305 GRGETRICKIYDSPCLPEAEAMFAINADGVGD 336
>gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]
Length = 340
Score = 94.4 bits (233), Expect = 2e-19
Identities = 97/347 (27%), Positives = 143/347 (41%), Gaps = 50/347 (14%)
Query: 31 GFQTAEELLEVKPSELSKEVGISKAE----------ALETLQIIRRECLTN-----KPRY 75
GFQ EE L + +L ++ GI+ A+ ++ +Q+ R L N + +
Sbjct: 12 GFQDEEESL-FQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKV 70
Query: 76 AGTSESHKKC------TALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGV 129
E+ K TA E E+ I T D +LGGG+ M TE G
Sbjct: 71 DKIKEAANKLIEPGFLTAFEYSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRT 130
Query: 130 GKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKG 189
GKTQL L V Q+P G G+ +FIDTE +F DR+ D+A
Sbjct: 131 GKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA---------------- 174
Query: 190 EEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFR 249
+ D LDN+L + + ELL Y+ F E +L+I+D I FR
Sbjct: 175 -DRFNVDHDAVLDNVL-YARAYTSEHQMELLD--YVAAKFHEEAGIFKLLIIDSIMALFR 230
Query: 250 HDLD---DLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLV----PALG 302
D +L+ R + L + ++ ++ + +AV +TNQMT P G
Sbjct: 231 VDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGG 290
Query: 303 ESWGHAATIRLIFHWDRKQ-RLATLYKSPSQKECTVLFQIKPQGFRD 348
HA+T R+ R + R+A +Y SP E F I G D
Sbjct: 291 HILAHASTTRISLRKGRGELRIAKIYDSPEMPENEATFAITAGGIGD 337
>gi|153946430 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 92.4 bits (228), Expect = 6e-19
Identities = 95/366 (25%), Positives = 153/366 (41%), Gaps = 46/366 (12%)
Query: 13 DLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNK 72
DL L+P + + A ++ +E+L +L + +S E L+ T
Sbjct: 2 DLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLR-------TAS 54
Query: 73 PRYAGTSESHKKCTALELLEQEH---TQGFIITF-CSALDDILGGGVPLMKTTEICGAPG 128
G+S TAL+L +Q+ TQ ++ C LD +L GG+PL TE+ G
Sbjct: 55 LHLRGSSI----LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSS 110
Query: 129 VGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHK 188
GKTQL +QL + VQ P GG+ AV+I TE +F R +Q L + +
Sbjct: 111 AGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKR--------LQQLMAQQPRLR 162
Query: 189 GEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPF 248
+ + L+ S I+ D LL V L RLV++D +A PF
Sbjct: 163 TDVPGELLQKLRFG---SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPF 219
Query: 249 RHDLDDLSL--RTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQAL---------- 296
R + D + R R L L + L++ + V+ NQ+T ++ A
Sbjct: 220 RCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDER 279
Query: 297 LVPALGESWGHAATIRLIFHWDRKQ--------RLATLYKSPSQKECTVLFQIKPQGFRD 348
+ PALG +W + +RL+ R++ R + +P + + I +G R
Sbjct: 280 VSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339
Query: 349 TVVTSA 354
T T +
Sbjct: 340 TPGTQS 345
>gi|153946427 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 92.4 bits (228), Expect = 6e-19
Identities = 95/366 (25%), Positives = 153/366 (41%), Gaps = 46/366 (12%)
Query: 13 DLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNK 72
DL L+P + + A ++ +E+L +L + +S E L+ T
Sbjct: 2 DLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLR-------TAS 54
Query: 73 PRYAGTSESHKKCTALELLEQEH---TQGFIITF-CSALDDILGGGVPLMKTTEICGAPG 128
G+S TAL+L +Q+ TQ ++ C LD +L GG+PL TE+ G
Sbjct: 55 LHLRGSSI----LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSS 110
Query: 129 VGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHK 188
GKTQL +QL + VQ P GG+ AV+I TE +F R +Q L + +
Sbjct: 111 AGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKR--------LQQLMAQQPRLR 162
Query: 189 GEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPF 248
+ + L+ S I+ D LL V L RLV++D +A PF
Sbjct: 163 TDVPGELLQKLRFG---SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPF 219
Query: 249 RHDLDDLSL--RTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQAL---------- 296
R + D + R R L L + L++ + V+ NQ+T ++ A
Sbjct: 220 RCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDER 279
Query: 297 LVPALGESWGHAATIRLIFHWDRKQ--------RLATLYKSPSQKECTVLFQIKPQGFRD 348
+ PALG +W + +RL+ R++ R + +P + + I +G R
Sbjct: 280 VSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339
Query: 349 TVVTSA 354
T T +
Sbjct: 340 TPGTQS 345
>gi|4885659 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 92.4 bits (228), Expect = 6e-19
Identities = 95/366 (25%), Positives = 153/366 (41%), Gaps = 46/366 (12%)
Query: 13 DLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNK 72
DL L+P + + A ++ +E+L +L + +S E L+ T
Sbjct: 2 DLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLR-------TAS 54
Query: 73 PRYAGTSESHKKCTALELLEQEH---TQGFIITF-CSALDDILGGGVPLMKTTEICGAPG 128
G+S TAL+L +Q+ TQ ++ C LD +L GG+PL TE+ G
Sbjct: 55 LHLRGSSI----LTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSS 110
Query: 129 VGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHK 188
GKTQL +QL + VQ P GG+ AV+I TE +F R +Q L + +
Sbjct: 111 AGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKR--------LQQLMAQQPRLR 162
Query: 189 GEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPF 248
+ + L+ S I+ D LL V L RLV++D +A PF
Sbjct: 163 TDVPGELLQKLRFG---SQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPF 219
Query: 249 RHDLDDLSL--RTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQAL---------- 296
R + D + R R L L + L++ + V+ NQ+T ++ A
Sbjct: 220 RCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDER 279
Query: 297 LVPALGESWGHAATIRLIFHWDRKQ--------RLATLYKSPSQKECTVLFQIKPQGFRD 348
+ PALG +W + +RL+ R++ R + +P + + I +G R
Sbjct: 280 VSPALGITWANQLLVRLLADRLREEEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339
Query: 349 TVVTSA 354
T T +
Sbjct: 340 TPGTQS 345
>gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
Length = 328
Score = 73.2 bits (178), Expect = 4e-13
Identities = 78/331 (23%), Positives = 139/331 (41%), Gaps = 48/331 (14%)
Query: 27 LVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCT 86
L S +T +L+ E++++ G+S + +++ + A E K T
Sbjct: 20 LRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEELKTST 79
Query: 87 ALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPE 146
A+ + T +LD +L G+ + TEI G PG GKTQ+C+ +A +V
Sbjct: 80 AI-----------LSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA--- 125
Query: 147 CFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILS 206
G+ +++D+ G R++ L A Q + AE + + A + F + ++L
Sbjct: 126 --HGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQ 183
Query: 207 HIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLR-TRLLNGL 265
+ + T V++V+VD + L L+ L
Sbjct: 184 ELRGTVAQQVT-------------GSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQL 230
Query: 266 AQQMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHW------DR 319
A+++ +LA + +AV++TN +T DR+ L PALG SW + R++
Sbjct: 231 ARELKTLARDLGMAVVVTNHITR--DRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASG 288
Query: 320 KQRLATLYKSPSQKECTVLFQIKPQGFRDTV 350
+R+A L KS Q P GF++ V
Sbjct: 289 GRRMACLAKSSRQ----------PTGFQEMV 309
>gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
Length = 348
Score = 71.2 bits (173), Expect = 1e-12
Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 37/253 (14%)
Query: 105 SALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSF 164
S LD +L G+ + TEI G PG GKTQ+C+ +A +V G+ +++D+ G
Sbjct: 107 SRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA-----HGLQQNVLYVDSNGGL 161
Query: 165 MVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVY 224
R++ L A Q + AE + + A + F + ++L + + T
Sbjct: 162 TASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVT------- 214
Query: 225 LLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLR-TRLLNGLAQQMISLANNHRLAVILT 283
V++V+VD + L L+ LA+++ +LA + +AV++T
Sbjct: 215 ------GSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVT 268
Query: 284 NQMTTKIDRNQALLVPALGESWGHAATIRLIFHW------DRKQRLATLYKSPSQKECTV 337
N +T DR+ L PALG SW + R++ +R+A L KS Q
Sbjct: 269 NHITR--DRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQ----- 321
Query: 338 LFQIKPQGFRDTV 350
P GF++ V
Sbjct: 322 -----PTGFQEMV 329
>gi|4885657 X-ray repair cross complementing protein 2 [Homo
sapiens]
Length = 280
Score = 51.6 bits (122), Expect = 1e-06
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
Query: 122 EICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQ 181
E G G GKT++ L +P+ GG+ E +FIDT+ F + R+V +
Sbjct: 45 EFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTIL-------- 96
Query: 182 LIAEKHKGEEHR-KALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVI 240
EHR + + L + C T LL +Y L H + L+I
Sbjct: 97 ---------EHRLSQSSEEIIKYCLGRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLI 147
Query: 241 VDGIAFPFRHDL----DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQ 285
+D ++ + D + ++L+ L +Q + L N++RL + T Q
Sbjct: 148 LDSLSAFYWIDRVNGGESVNLQESTLRKCSQCLEKLVNDYRLVLFATTQ 196
>gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens]
Length = 242
Score = 50.1 bits (118), Expect = 3e-06
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 9/154 (5%)
Query: 203 NILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD---DLSLRT 259
++L ++ Y R + T+ Q+ + S+ L+IVD +R D +LS R
Sbjct: 87 DVLDNVAYARAFN-TDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQ 145
Query: 260 RLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLV----PALGESWGHAATIRLIF 315
L + ++ LA+ +AV++TNQ+ ++D P G HA+T RL
Sbjct: 146 MHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYL 205
Query: 316 HWDR-KQRLATLYKSPSQKECTVLFQIKPQGFRD 348
R + R+ +Y SP E +F I G D
Sbjct: 206 RKGRGETRICKIYDSPCLPEAEAMFAINADGVGD 239
>gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens]
Length = 216
Score = 40.4 bits (93), Expect = 0.003
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 18/96 (18%)
Query: 261 LLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHW--- 317
L+ LA+++ +LA + +AV++TN +T DR+ L PALG SW + R++
Sbjct: 114 LMMQLARELKTLARDLGMAVVVTNHITR--DRDSGRLKPALGRSWSFVPSTRILLDTIEG 171
Query: 318 ---DRKQRLATLYKSPSQKECTVLFQIKPQGFRDTV 350
+R+A L KS Q P GF++ V
Sbjct: 172 AGASGGRRMACLAKSSRQ----------PTGFQEMV 197
>gi|166235180 tetratricopeptide repeat domain 22 isoform 1 [Homo
sapiens]
Length = 569
Score = 31.2 bits (69), Expect = 1.6
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 31 GFQTAEELLEVKPSELSKE-VGISKA------EALETLQIIRRECLTNKPRYAGTSESHK 83
G +ELL V + L++ V ++KA L LQ++R +CL K A + K
Sbjct: 397 GVDAVQELLAVDEAALNQALVFLAKAGESELGATLPELQLLRGKCLRIKGEDANAAACFK 456
Query: 84 KCTALELLEQEHTQGF 99
+ L+ HT GF
Sbjct: 457 RAVELDDAGSSHTDGF 472
>gi|40806173 spastic paraplegia 7 isoform 2 [Homo sapiens]
Length = 489
Score = 30.4 bits (67), Expect = 2.7
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 111 LGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVV 170
LG VP K + G PG GKT L +A + Q+P F +AG F++ G RV
Sbjct: 337 LGAKVP--KGALLLGPPGCGKTLLAKAVATEAQVP--FLAMAGPE-FVEVIGGLGAARVR 391
Query: 171 DL 172
L
Sbjct: 392 SL 393
>gi|4507173 spastic paraplegia 7 isoform 1 [Homo sapiens]
Length = 795
Score = 30.4 bits (67), Expect = 2.7
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 111 LGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVV 170
LG VP K + G PG GKT L +A + Q+P F +AG F++ G RV
Sbjct: 337 LGAKVP--KGALLLGPPGCGKTLLAKAVATEAQVP--FLAMAGPE-FVEVIGGLGAARVR 391
Query: 171 DL 172
L
Sbjct: 392 SL 393
>gi|154350220 DNA polymerase iota [Homo sapiens]
Length = 740
Score = 30.0 bits (66), Expect = 3.5
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 27 LVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRE---CLTNKPRYAGTSESHK 83
L + G + +L P L KE+GIS A+ ++ L L+ P+ +S K
Sbjct: 275 LEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFK 334
Query: 84 KCTA 87
KC++
Sbjct: 335 KCSS 338
>gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens]
Length = 797
Score = 30.0 bits (66), Expect = 3.5
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 114 GVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLA 173
G + K + G PG GKT L A + +P FI GS ++ V +
Sbjct: 337 GAKIPKGAILTGPPGTGKTLLAKATAGEANVP-----------FITVSGSEFLEMFVGVG 385
Query: 174 TACIQHLQLIAEKH 187
A ++ L +A K+
Sbjct: 386 PARVRDLFALARKN 399
>gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo
sapiens]
Length = 2961
Score = 29.3 bits (64), Expect = 6.0
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 86 TALELLEQEHTQGFIITF---CSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDV 142
T + + EQEH Q +TF C+ D GG+ L+ + + M V V
Sbjct: 880 TMMNVTEQEHKQSLQLTFRSLCTYFSDKDPGGLLLLPEKNDLAKMNISEVLAVMDTLVSV 939
Query: 143 QIPEC----FGGVAGE------AVFIDTEGSFM 165
EC G GE ++F +GS +
Sbjct: 940 AARECELLMLSGAPGEVGSVLFSLFWSVQGSLL 972
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,350,066
Number of Sequences: 37866
Number of extensions: 549697
Number of successful extensions: 1452
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1410
Number of HSP's gapped (non-prelim): 25
length of query: 376
length of database: 18,247,518
effective HSP length: 104
effective length of query: 272
effective length of database: 14,309,454
effective search space: 3892171488
effective search space used: 3892171488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.