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Search of human proteins with 171184421
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|171184421 thioredoxin interacting protein [Homo sapiens]
(391 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|171184421 thioredoxin interacting protein [Homo sapiens] 793 0.0
gi|190886442 arrestin domain containing 4 [Homo sapiens] 336 2e-92
gi|32698736 arrestin domain containing 3 [Homo sapiens] 308 5e-84
gi|18373305 arrestin domain containing 2 isoform 1 [Homo sapiens] 261 1e-69
gi|71040100 arrestin domain containing 2 isoform 2 [Homo sapiens] 253 2e-67
gi|22748653 arrestin domain containing 1 [Homo sapiens] 82 1e-15
gi|122937478 arrestin domain containing 5 [Homo sapiens] 45 1e-04
gi|113865883 WD repeat domain 38 [Homo sapiens] 30 2.9
gi|210147507 lipopolysaccharide-induced TNF-alpha factor isoform... 30 3.7
gi|210147505 lipopolysaccharide-induced TNF-alpha factor isoform... 30 3.7
gi|65787265 lipopolysaccharide-induced TNF-alpha factor isoform ... 30 3.7
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 30 3.7
gi|61676089 hypothetical protein LOC222584 [Homo sapiens] 30 4.9
gi|158303333 synaptopodin isoform B [Homo sapiens] 29 6.4
gi|40353727 synaptopodin isoform A [Homo sapiens] 29 6.4
gi|57863253 zinc finger protein 500 [Homo sapiens] 29 6.4
gi|221139926 NHS-like 1 [Homo sapiens] 29 8.3
>gi|171184421 thioredoxin interacting protein [Homo sapiens]
Length = 391
Score = 793 bits (2048), Expect = 0.0
Identities = 391/391 (100%), Positives = 391/391 (100%)
Query: 1 MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGS 60
MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGS
Sbjct: 1 MVMFKKIKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGS 60
Query: 61 QQCKQTSEYLRYEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120
QQCKQTSEYLRYEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC
Sbjct: 61 QQCKQTSEYLRYEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGC 120
Query: 121 VDYWVKAFLDRPSQPTQETKKNFEVVDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 180
VDYWVKAFLDRPSQPTQETKKNFEVVDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV
Sbjct: 121 VDYWVKAFLDRPSQPTQETKKNFEVVDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSV 180
Query: 181 SARIDRKGFCEGDEISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240
SARIDRKGFCEGDEISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN
Sbjct: 181 SARIDRKGFCEGDEISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSVRGN 240
Query: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300
HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSRS
Sbjct: 241 HIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSRS 300
Query: 301 GLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDVIPEDHRLESPTTPLLDDMDGSQD 360
GLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDVIPEDHRLESPTTPLLDDMDGSQD
Sbjct: 301 GLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDVIPEDHRLESPTTPLLDDMDGSQD 360
Query: 361 SPIFMYAPEFKFMPPPTYTEVDPCILNNNVQ 391
SPIFMYAPEFKFMPPPTYTEVDPCILNNNVQ
Sbjct: 361 SPIFMYAPEFKFMPPPTYTEVDPCILNNNVQ 391
>gi|190886442 arrestin domain containing 4 [Homo sapiens]
Length = 418
Score = 336 bits (862), Expect = 2e-92
Identities = 179/394 (45%), Positives = 250/394 (63%), Gaps = 22/394 (5%)
Query: 6 KIKSFEVVFNDPEK-VYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGSQQCK 64
++KS +VF D K Y SGE VAG V++E E ++A+R+ A G A W G C
Sbjct: 16 RVKSLGLVFEDERKGCYSSGETVAGHVLLEASEPVALRALRLEAQGRATAAW--GPSTCP 73
Query: 65 QTS------------EYLRYEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGT 112
+ S EYL L L + P GE +++++PG K+E+ F F+LP PL T
Sbjct: 74 RASASTAALAVFSEVEYLNVR--LSLREPPAGEG-IILLQPG-KHEFPFRFQLPSEPLVT 129
Query: 113 SFKGKYGCVDYWVKAFLDRPSQPTQETKKNFEVVDLVDVNTPDLMAPVSAKKEKKVSCMF 172
SF GKYG + Y V+A L+RP P Q K+ +VV VDVNTP L+ PV +EK V C F
Sbjct: 130 SFTGKYGSIQYCVRAVLERPKVPDQSVKRELQVVSHVDVNTPALLTPVLKTQEKMVGCWF 189
Query: 173 IPDGRVSVSARIDRKGFCEGDEISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQ 232
G VS+SA+I+RKG+C G+ I I+A+ EN SR++VPKAAI TYLA+G+TK +
Sbjct: 190 FTSGPVSLSAKIERKGYCNGEAIPIYAEIENCSSRLIVPKAAIFQTQTYLASGKTKTIRH 249
Query: 233 KLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDL 292
+++VRGNHI SG+ +W GK+L++ + PSIL C I+RV+YSL +Y+ +PG+KK++L+L
Sbjct: 250 MVANVRGNHIASGSTDTWNGKTLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKKLMLEL 309
Query: 293 PLVIGS--RSGLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDVIPEDH-RLESPTT 349
PLVIG+ +G SR SS+AS+ S +MSW+ L +P+ PEAPP Y DV+ E+ P
Sbjct: 310 PLVIGTIPYNGFGSRNSSIASQFSMDMSWLTLTLPEQPEAPPNYADVVSEEEFSRHIPPY 369
Query: 350 PLLDDMDGSQDSPIFMYAPEFKFMPPPTYTEVDP 383
P + +G P+F EF+F PPP Y+EVDP
Sbjct: 370 PQPPNCEGEVCCPVFACIQEFRFQPPPLYSEVDP 403
>gi|32698736 arrestin domain containing 3 [Homo sapiens]
Length = 414
Score = 308 bits (789), Expect = 5e-84
Identities = 166/396 (41%), Positives = 242/396 (61%), Gaps = 19/396 (4%)
Query: 6 KIKSFEVVF---NDPE-KVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQG-- 59
K+KS + F ND VY SG+ V+GRV +EV RVK+++I A G AKV W +
Sbjct: 5 KVKSLTISFDCLNDSNVPVYSSGDTVSGRVNLEVTGEIRVKSLKIHARGHAKVRWTESRN 64
Query: 60 -------SQQCKQTSEYLRYEDTLL--LEDQPTGENEMVIMRPGNKYEYKFGFELPQGPL 110
+Q + EY ++D L+ D E + G ++EY F FELPQ PL
Sbjct: 65 AGSNTAYTQNYTEEVEYFNHKDILIGHERDDDNSEEGFHTIHSG-RHEYAFSFELPQTPL 123
Query: 111 GTSFKGKYGCVDYWVKAFLDRPSQPTQETKKNFEVVDLVDVNTPDLMAPVSAKKEKKVSC 170
TSF+G++G V YWVKA L RP + KK F V + +D+NTP L++P + KEK + C
Sbjct: 124 ATSFEGRHGSVRYWVKAELHRPWLLPVKLKKEFTVFEHIDINTPSLLSPQAGTKEKTLCC 183
Query: 171 MFIPDGRVSVSARIDRKGFCEGDEISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVL 230
F G +S+SA+I+RKG+ G+ I I A+ EN SR+VVPKAAI + A G+ K +
Sbjct: 184 WFCTSGPISLSAKIERKGYTPGESIQIFAEIENCSSRMVVPKAAIYQTQAFYAKGKMKEV 243
Query: 231 TQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVIL 290
Q ++++RG + SG +W GK L++ + PSIL C+I+RVEYSL++YV +PG+ + L
Sbjct: 244 KQLVANLRGESLSSGKTETWNGKLLKIPPVSPSILDCSIIRVEYSLMVYVDIPGAMDLFL 303
Query: 291 DLPLVIGS--RSGLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDVIPEDHRLES-P 347
+LPLVIG+ SRTSS++S+ S M+W+ L++P+ PEAPP Y +V+ E+ R +
Sbjct: 304 NLPLVIGTIPLHPFGSRTSSVSSQCSMNMNWLSLSLPERPEAPPSYAEVVTEEQRRNNLA 363
Query: 348 TTPLLDDMDGSQDSPIFMYAPEFKFMPPPTYTEVDP 383
DD + + P+F Y EF+F+PPP Y+E+DP
Sbjct: 364 PVSACDDFERALQGPLFAYIQEFRFLPPPLYSEIDP 399
>gi|18373305 arrestin domain containing 2 isoform 1 [Homo sapiens]
Length = 407
Score = 261 bits (666), Expect = 1e-69
Identities = 152/399 (38%), Positives = 230/399 (57%), Gaps = 23/399 (5%)
Query: 2 VMFKKIKSFEVVFNDP----EKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWM 57
++F K+K+F V + E V+ G+ VAGRV++E+ RV A+R+ A G A V W
Sbjct: 1 MLFDKVKAFSVQLDGATAGVEPVFSGGQAVAGRVLLELSSAARVGALRLRARGRAHVHWT 60
Query: 58 QG---------SQQCKQTSEYLRYEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQG 108
+ +Q + E + + TLL D TGE + P ++E+ F F+LP
Sbjct: 61 ESRSAGSSTAYTQSYSERVEVVSHRATLLAPD--TGETTTL---PPGRHEFLFSFQLPP- 114
Query: 109 PLGTSFKGKYGCVDYWVKAFLDRPSQPTQETKKNFEVVDLVDVNTPDLMAPVSAKKEKKV 168
L TSF+GK+G V Y +KA L RP P + +K F V++ VD+NTP L+AP + +EK
Sbjct: 115 TLVTSFEGKHGSVRYCIKATLHRPWVPARRARKVFTVIEPVDINTPALLAPQAGAREKVA 174
Query: 169 SCMFIPDGRVSVSARIDRKGFCEGDEISIHADFENTCSRIVVPKAAIVARHTYLANGQTK 228
+ G VS+SA+IDRKG+ G+ I + A+ +N +R V+P+AA+V T++A G K
Sbjct: 175 RSWYCNRGLVSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARK 234
Query: 229 VLTQKLSSVRGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKV 288
++S+ G + G A W+G++LR+ + PSIL C +L V+Y+L + V +PG+ K+
Sbjct: 235 QKRAVVASLAGEPVGPGQRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGTSKL 294
Query: 289 ILDLPLVIGS--RSGLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDVI--PEDHRL 344
+L+LPLVIG+ SR+SS+ S S + W +P+ PEAPP Y +V+ E+ L
Sbjct: 295 LLELPLVIGTIPLHPFGSRSSSVGSHASFLLDWRLGALPERPEAPPEYSEVVADTEEAAL 354
Query: 345 ESPTTPLLDDMDGSQDSPIFMYAPEFKFMPPPTYTEVDP 383
PL D D S + P F Y EF++ PPP Y+E DP
Sbjct: 355 GQSPFPLPQDPDMSLEGPFFAYIQEFRYRPPPLYSEEDP 393
>gi|71040100 arrestin domain containing 2 isoform 2 [Homo sapiens]
Length = 402
Score = 253 bits (646), Expect = 2e-67
Identities = 147/390 (37%), Positives = 222/390 (56%), Gaps = 20/390 (5%)
Query: 7 IKSFEV-VFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQG------ 59
++SF + + P Y GE++ GRV++E RV+A+ + A G A W++G
Sbjct: 6 VRSFALELARGPGGAYRGGERLCGRVLLEAAAPLRVRALEVKARGGAATHWLEGRSVGVN 65
Query: 60 --SQQCKQTSEYLRYEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGK 117
S YLR LL + TGE + P ++E+ F F+LP L TSF+GK
Sbjct: 66 AVSSDYAAAETYLRRRQLLLRD---TGETTTL---PPGRHEFLFSFQLPP-TLVTSFEGK 118
Query: 118 YGCVDYWVKAFLDRPSQPTQETKKNFEVVDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGR 177
+G V Y +KA L RP P + +K F V++ VD+NTP L+AP + +EK + G
Sbjct: 119 HGSVRYCIKATLHRPWVPARRARKVFTVIEPVDINTPALLAPQAGAREKVARSWYCNRGL 178
Query: 178 VSVSARIDRKGFCEGDEISIHADFENTCSRIVVPKAAIVARHTYLANGQTKVLTQKLSSV 237
VS+SA+IDRKG+ G+ I + A+ +N +R V+P+AA+V T++A G K ++S+
Sbjct: 179 VSLSAKIDRKGYTPGEVIPVFAEIDNGSTRPVLPRAAVVQTQTFMARGARKQKRAVVASL 238
Query: 238 RGNHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIG 297
G + G A W+G++LR+ + PSIL C +L V+Y+L + V +PG+ K++L+LPLVIG
Sbjct: 239 AGEPVGPGQRALWQGRALRIPPVGPSILHCRVLHVDYALKVCVDIPGTSKLLLELPLVIG 298
Query: 298 S--RSGLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDVI--PEDHRLESPTTPLLD 353
+ SR+SS+ S S + W +P+ PEAPP Y +V+ E+ L PL
Sbjct: 299 TIPLHPFGSRSSSVGSHASFLLDWRLGALPERPEAPPEYSEVVADTEEAALGQSPFPLPQ 358
Query: 354 DMDGSQDSPIFMYAPEFKFMPPPTYTEVDP 383
D D S + P F Y EF++ PPP Y+E DP
Sbjct: 359 DPDMSLEGPFFAYIQEFRYRPPPLYSEEDP 388
>gi|22748653 arrestin domain containing 1 [Homo sapiens]
Length = 433
Score = 81.6 bits (200), Expect = 1e-15
Identities = 79/347 (22%), Positives = 155/347 (44%), Gaps = 36/347 (10%)
Query: 6 KIKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGSQQCKQ 65
+++ FE+ + VY GE +AG V V + +A+R+ G V S +
Sbjct: 3 RVQLFEISLSHGRVVYSPGEPLAGTVRVRLGAPLPFRAIRVTCIGSCGV-----SNKAND 57
Query: 66 TSEYLR---YEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGKYGCVD 122
T+ + + +L L D+ + P ++ + F F LP TSF+G +G +
Sbjct: 58 TAWVVEEGYFNSSLSLADKGS--------LPAGEHSFPFQFLLP-ATAPTSFEGPFGKIV 108
Query: 123 YWVKAFLDRPS-QPTQETKKNFEVVDLVDVNT-PDLMAPVSAKKEKKVSCMFIPDGRVSV 180
+ V+A + P + F ++ +++N+ PD+ P A KK S + G V +
Sbjct: 109 HQVRAAIHTPRFSKDHKCSLVFYILSPLNLNSIPDIEQPNVASATKKFSYKLVKTGSVVL 168
Query: 181 SARIDRKGFCEGDEISIHADFENTCSRIVVP-KAAIVARHTYLANGQTKVLTQKLSSVRG 239
+A D +G+ G + +HAD EN + P A+++ + +Y A + + ++ V G
Sbjct: 169 TASTDLRGYVVGQALQLHADVENQSGKDTSPVVASLLQKVSYKAKRWIHDV-RTIAEVEG 227
Query: 240 NHIISGTCASWRGKSLRVQKIRPSILGCNILRVEYSLLIYVSVPGSKKVILDLPLVIGSR 299
+ + A W + L + ++ GC+++ ++Y L + + P + + LP+ IG+
Sbjct: 228 AGVKAWRRAQWHEQILVPALPQSALPGCSLIHIDYYLQVSLKAP---EATVTLPVFIGN- 283
Query: 300 SGLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDVIPEDHRLES 346
++ + ++ R L +P P APP + P E+
Sbjct: 284 --IAVNHAPVSPRPG-------LGLP--PGAPPLVVPSAPPQEEAEA 319
>gi|122937478 arrestin domain containing 5 [Homo sapiens]
Length = 342
Score = 44.7 bits (104), Expect = 1e-04
Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 27/228 (11%)
Query: 7 IKSFEVVFNDPEKVYGSGEKVAGRVIVEVCEVTRVKAVRILACGVAKVLWMQGSQQ---- 62
+KS E+V + +++Y +G + G+VI+ + V++ G V W + +
Sbjct: 18 VKSIELVLPE-DRIYLAGSSIKGQVILTLNSTLVDPIVKVELVGRGYVEWSEEAGASCDY 76
Query: 63 -----CKQTSEYLRYEDTLLLEDQPTGENEMVIMRPGNKYEYKFGFELPQGPLGTSFKGK 117
C ++Y+ T +ED + + F F LP L ++F K
Sbjct: 77 SRNVICNNKADYVHKTKTFPVEDN---------WLSAGSHTFDFHFNLPP-RLPSTFTSK 126
Query: 118 YGCVDYWVKAFLDRPSQPTQETKKNFEVVDLVDV---NTPDLMAPVSAKKEKKVSCMFIP 174
+G V Y+V+A + K+ + +V TP P+ + E+KVS
Sbjct: 127 FGHVFYFVQASC-MGREHILAKKRMYLLVQGTSTFHKETP-FQNPLFVEAEEKVSYNCCR 184
Query: 175 DGRVSVSARIDRKGFCEGDEISIHADFENTCSRIVVPKAAIVARHTYL 222
G V + +++R F G+++ + N S+ + K + A + ++
Sbjct: 185 QGTVCLQIQMERNTFTPGEKVVFTTEINNQTSKCI--KTVVFALYAHI 230
>gi|113865883 WD repeat domain 38 [Homo sapiens]
Length = 314
Score = 30.4 bits (67), Expect = 2.9
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 124 WVKAFLDRPSQPTQETKKNFEVVDLVDVNTPDLMAPVSAKKEKKVSCMFIPDGRVSVSAR 183
WVK+ P + + +V + D NT + + + +C F PDG++ VS
Sbjct: 235 WVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLKGVLDVAHTCAFTPDGKILVSGA 294
Query: 184 IDR 186
D+
Sbjct: 295 ADQ 297
>gi|210147507 lipopolysaccharide-induced TNF-alpha factor isoform 2
[Homo sapiens]
Length = 152
Score = 30.0 bits (66), Expect = 3.7
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 328 PEAPPCYMDVIPEDHRLESPTTPLLDDMDGSQDSPIFMYAPEFKFMPPPTYTEVDPCILN 387
P APP Y + + + +P P+ G + P+ K M PP+Y I N
Sbjct: 17 PSAPPSYEETVAVNSYYPTPPAPMPGPTTG------LVTGPDGKGMNPPSYYTQPAPIPN 70
Query: 388 NN 389
NN
Sbjct: 71 NN 72
>gi|210147505 lipopolysaccharide-induced TNF-alpha factor isoform 1
[Homo sapiens]
Length = 161
Score = 30.0 bits (66), Expect = 3.7
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 328 PEAPPCYMDVIPEDHRLESPTTPLLDDMDGSQDSPIFMYAPEFKFMPPPTYTEVDPCILN 387
P APP Y + + + +P P+ G + P+ K M PP+Y I N
Sbjct: 17 PSAPPSYEETVAVNSYYPTPPAPMPGPTTG------LVTGPDGKGMNPPSYYTQPAPIPN 70
Query: 388 NN 389
NN
Sbjct: 71 NN 72
>gi|65787265 lipopolysaccharide-induced TNF-alpha factor isoform 1
[Homo sapiens]
Length = 161
Score = 30.0 bits (66), Expect = 3.7
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 328 PEAPPCYMDVIPEDHRLESPTTPLLDDMDGSQDSPIFMYAPEFKFMPPPTYTEVDPCILN 387
P APP Y + + + +P P+ G + P+ K M PP+Y I N
Sbjct: 17 PSAPPSYEETVAVNSYYPTPPAPMPGPTTG------LVTGPDGKGMNPPSYYTQPAPIPN 70
Query: 388 NN 389
NN
Sbjct: 71 NN 72
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 30.0 bits (66), Expect = 3.7
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 12/118 (10%)
Query: 274 YSLLIYVSVPGSKKVILDLPLVIGSRSGLSSR--------TSSMASRTSSEMSWVDLNIP 325
+SL S P ++LDL + +G RS S R T S TS P
Sbjct: 698 FSLKTPDSPPTPAPLLLDLGIPVGQRSAKSPRREEEPRGGTVSPPPGTSRSAP----GTP 753
Query: 326 DTPEAPPCYMDVIPEDHRLESPTTPLLDDMDGSQDSPIFMYAPEFKFMPPPTYTEVDP 383
TP +PP + P L S P G + SP+ P + P + + DP
Sbjct: 754 GTPRSPPLGLISRPRPSPLRSRIDPWSFVSAGPRPSPLPSPQPAPRRAPWTLFPDSDP 811
>gi|61676089 hypothetical protein LOC222584 [Homo sapiens]
Length = 1011
Score = 29.6 bits (65), Expect = 4.9
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 13/126 (10%)
Query: 64 KQTSEYLRYEDTLLLEDQ--PTGENEMVIMRPGNKYEYKFGF---------ELPQGPLGT 112
KQT + LL+ + P +N + PGN Y + E P+ L
Sbjct: 646 KQTENLKNQQTENLLKRRSFPLFDNSKANLDPGNSKHYVYSTLTRNRVRQPEKPKEDLLK 705
Query: 113 SFKGKYGCVDYWVK--AFLDRPSQPTQETKKNFEVVDLVDVNTPDLMAPVSAKKEKKVSC 170
S K + + + + + P+ T K+ + L+DVN + +++KKE K S
Sbjct: 706 SSKSMHNVTHNLEEDEEEVTKRNSPSGTTTKSVSIAALLDVNKEESNKELASKKEVKGSP 765
Query: 171 MFIPDG 176
F+ G
Sbjct: 766 SFLKKG 771
>gi|158303333 synaptopodin isoform B [Homo sapiens]
Length = 685
Score = 29.3 bits (64), Expect = 6.4
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 331 PPCYMDVIPEDHRLESPTTPLLDDMDGSQDSPIFMYAPEFKFMPPPTYTE 380
PP D P R +P+++ Q SP P F PPTYTE
Sbjct: 274 PPSLPDRSPRPQRHIMSRSPMVERRMMGQRSPASERRPLGNFTAPPTYTE 323
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 29.3 bits (64), Expect = 6.4
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 331 PPCYMDVIPEDHRLESPTTPLLDDMDGSQDSPIFMYAPEFKFMPPPTYTE 380
PP D P R +P+++ Q SP P F PPTYTE
Sbjct: 274 PPSLPDRSPRPQRHIMSRSPMVERRMMGQRSPASERRPLGNFTAPPTYTE 323
>gi|57863253 zinc finger protein 500 [Homo sapiens]
Length = 480
Score = 29.3 bits (64), Expect = 6.4
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 293 PLVIGSRSGLSSRTSSMASRTSSEMSW--VDLNIPDTP-----EAPPCYMDVIPEDHRLE 345
PL+ R + R MAS + +W V +N+ D E P C MD D LE
Sbjct: 193 PLLWPERGPPAPRHQEMASASPFLSAWSQVPVNLEDVAVYLSGEEPRC-MDPAQRDAPLE 251
Query: 346 S--PTTPLLDDMDGSQDSPIFM 365
+ P L D DG +D+P+ M
Sbjct: 252 NEGPGIQLEDGGDGREDAPLRM 273
>gi|221139926 NHS-like 1 [Homo sapiens]
Length = 1606
Score = 28.9 bits (63), Expect = 8.3
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 9/97 (9%)
Query: 282 VPGSKKVILDLPLVIGSRSGLSSRTSSMASRTSSEMSWVDLNIPDTPEAPPCYMDVI--P 339
VP K ++ + S + LSS TS+ S T ++ + P P PP P
Sbjct: 885 VPERKSSLISSVSISSSSTSLSSSTSTEGSGTMKKLD-PAVGSPPAPPPPPVPSPPFPCP 943
Query: 340 EDHRLESPTTPLLDDMDGSQDSPIFMYAPEFKFMPPP 376
D P P + D SQ SP+ P PPP
Sbjct: 944 ADRSPFLPPPPPVTDC--SQGSPL----PHSPVFPPP 974
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,169,861
Number of Sequences: 37866
Number of extensions: 741094
Number of successful extensions: 1678
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1649
Number of HSP's gapped (non-prelim): 20
length of query: 391
length of database: 18,247,518
effective HSP length: 104
effective length of query: 287
effective length of database: 14,309,454
effective search space: 4106813298
effective search space used: 4106813298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.