Guide to the Human Genome
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Name: GTF3C5 Sequence: fasta or formatted (519aa) NCBI GI: 170763506
Description:

general transcription factor IIIC, polypeptide 5 isoform 2

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt prot [526aa] general transcription factor IIIC, polypeptide 5 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         32           3
 C cysteine            1.5          8           1
 D aspartate           5.8         30           1
 E glutamate           9.2         48           9
 F phenylalanine       3.7         19           2
 G glycine             5.8         30           2
 H histidine           2.1         11           1
 I isoleucine          5.0         26           2
 K lysine              6.4         33           2
 L leucine             8.5         44           3
 M methionine          2.7         14           1
 N asparagine          2.9         15           2
 P proline             6.9         36           3
 Q glutamine           2.9         15           1
 R arginine            8.1         42           2
 S serine              6.6         34           3
 T threonine           4.6         24           1
 V valine              5.6         29           2
 W tryptophan          1.0          5           1
 Y tyrosine            4.6         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   general transcription factor IIIC, polypeptide 5 is... 
GTF3C5                0.993   general transcription factor IIIC, polypeptide 5 is...
ANP32B                0.019   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
C14orf37              0.017   hypothetical protein LOC145407 
MYST4                 0.017   MYST histone acetyltransferase (monocytic leukemia)...
NPHP1                 0.015   nephrocystin 1 isoform 3 
NPHP1                 0.015   nephrocystin 1 isoform 2 
NPHP1                 0.015   nephrocystin 1 isoform 1 
MYT1                  0.015   myelin transcription factor 1 
TTBK1                 0.015   tau tubulin kinase 1 
SETD1B                0.015   SET domain containing 1B 
CLSPN                 0.015   claspin 
PTMA                  0.015   prothymosin, alpha isoform 2 
POLR3GL               0.015   polymerase (RNA) III (DNA directed) polypeptide G (3...
CDC2L2                0.015   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.015   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.015   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.015   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.015   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.015   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.015   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.015   cell division cycle 2-like 1 (PITSLRE proteins) isof...
ARID4B                0.015   AT rich interactive domain 4B isoform 1 
LOC728026             0.014   PREDICTED: hypothetical protein 
LOC728026             0.014   PREDICTED: hypothetical protein 
LOC441454             0.014   PREDICTED: hypothetical protein 
LOC728026             0.014   PREDICTED: hypothetical protein 
EHMT2                 0.014   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.014   euchromatic histone-lysine N-methyltransferase 2 is...
CENPB                 0.014   centromere protein B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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