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Search of human proteins with 170295795
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|170295795 hypothetical protein LOC387071 [Homo sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|170295795 hypothetical protein LOC387071 [Homo sapiens] 285 6e-78
gi|189491675 hypothetical protein LOC84908 [Homo sapiens] 241 1e-64
gi|239748186 PREDICTED: similar to CG5323 [Homo sapiens] 218 1e-57
gi|239742080 PREDICTED: hypothetical protein XP_002342431 [Homo ... 218 1e-57
gi|6912708 translocase of inner mitochondrial membrane 10 homolo... 30 0.49
gi|115511012 coiled-coil domain containing 136 [Homo sapiens] 30 0.83
gi|110347451 platelet/endothelial cell adhesion molecule [Homo s... 29 1.1
gi|40217847 activating signal cointegrator 1 complex subunit 3-l... 29 1.4
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 28 2.4
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 28 2.4
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 28 2.4
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 28 2.4
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 28 2.4
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 28 2.4
gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor ... 28 2.4
gi|26190614 rhotekin 2 [Homo sapiens] 28 3.1
gi|42475941 zinc finger protein 261 [Homo sapiens] 27 4.1
gi|4827067 zinc finger protein 261 [Homo sapiens] 27 4.1
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 27 5.4
gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens] 27 7.0
gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens] 27 7.0
gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens] 27 7.0
gi|21361749 ubiquitin thioesterase 49 [Homo sapiens] 27 7.0
gi|126157477 hypothetical protein LOC79680 [Homo sapiens] 27 7.0
gi|110611218 ribosome binding protein 1 [Homo sapiens] 26 9.2
gi|110611220 ribosome binding protein 1 [Homo sapiens] 26 9.2
gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD prote... 26 9.2
gi|148727298 keratin associated protein 10-6 [Homo sapiens] 26 9.2
gi|6912712 translocase of inner mitochondrial membrane 8 homolog... 26 9.2
gi|32140182 keratin associated protein 10-10 [Homo sapiens] 26 9.2
>gi|170295795 hypothetical protein LOC387071 [Homo sapiens]
Length = 138
Score = 285 bits (730), Expect = 6e-78
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MVELQQLRVQEVVDSMVKSLERENIWKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVP 60
MVELQQLRVQEVVDSMVKSLERENIWKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVP
Sbjct: 1 MVELQQLRVQEVVDSMVKSLERENIWKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVP 60
Query: 61 LAQVQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHIH 120
LAQVQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHIH
Sbjct: 61 LAQVQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHIH 120
Query: 121 LISTMTKKMKEAVLSIGK 138
LISTMTKKMKEAVLSIGK
Sbjct: 121 LISTMTKKMKEAVLSIGK 138
>gi|189491675 hypothetical protein LOC84908 [Homo sapiens]
Length = 138
Score = 241 bits (616), Expect = 1e-64
Identities = 121/138 (87%), Positives = 125/138 (90%)
Query: 1 MVELQQLRVQEVVDSMVKSLERENIWKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVP 60
M ELQQLRVQE V+SMVKSLERENI K QGLMF CSASCCEDSQA +QVHQCIE C VP
Sbjct: 1 MAELQQLRVQEAVESMVKSLERENIRKMQGLMFRCSASCCEDSQASMKQVHQCIERCHVP 60
Query: 61 LAQVQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHIH 120
LAQ QALVTSELEKFQD LARCTMHCNDKAKDSIDAGSKELQVKQQLD CVTKCVDDH+H
Sbjct: 61 LAQAQALVTSELEKFQDRLARCTMHCNDKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMH 120
Query: 121 LISTMTKKMKEAVLSIGK 138
LI TMTKKMKEA+LSIGK
Sbjct: 121 LIPTMTKKMKEALLSIGK 138
>gi|239748186 PREDICTED: similar to CG5323 [Homo sapiens]
Length = 135
Score = 218 bits (555), Expect = 1e-57
Identities = 108/135 (80%), Positives = 120/135 (88%)
Query: 4 LQQLRVQEVVDSMVKSLERENIWKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVPLAQ 63
+ +++VQ+VV+SMVKSLERENI K QGLMF CS SCCEDSQA QQVHQCI+ C V LAQ
Sbjct: 1 MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60
Query: 64 VQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHIHLIS 123
QALVTSELEKFQDHLA+CT CN+KAKDSI AGSKELQVKQQLDGCVTKCVDDH+HLI
Sbjct: 61 AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120
Query: 124 TMTKKMKEAVLSIGK 138
TMTKKMKEA+L+IGK
Sbjct: 121 TMTKKMKEALLAIGK 135
>gi|239742080 PREDICTED: hypothetical protein XP_002342431 [Homo
sapiens]
Length = 135
Score = 218 bits (555), Expect = 1e-57
Identities = 108/135 (80%), Positives = 120/135 (88%)
Query: 4 LQQLRVQEVVDSMVKSLERENIWKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVPLAQ 63
+ +++VQ+VV+SMVKSLERENI K QGLMF CS SCCEDSQA QQVHQCI+ C V LAQ
Sbjct: 1 MTKIKVQKVVESMVKSLERENIRKMQGLMFRCSTSCCEDSQASLQQVHQCIKHCHVLLAQ 60
Query: 64 VQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHIHLIS 123
QALVTSELEKFQDHLA+CT CN+KAKDSI AGSKELQVKQQLDGCVTKCVDDH+HLI
Sbjct: 61 AQALVTSELEKFQDHLAQCTTQCNNKAKDSIAAGSKELQVKQQLDGCVTKCVDDHMHLIP 120
Query: 124 TMTKKMKEAVLSIGK 138
TMTKKMKEA+L+IGK
Sbjct: 121 TMTKKMKEALLAIGK 135
>gi|6912708 translocase of inner mitochondrial membrane 10 homolog
[Homo sapiens]
Length = 90
Score = 30.4 bits (67), Expect = 0.49
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 60 PLAQVQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHI 119
PL Q E+E D R T C+ K + KE ++ + C+ +CV ++
Sbjct: 3 PLRAQQLAAELEVEMMADMYNRMTSACHRKC---VPPHYKEAELSKGESVCLDRCVSKYL 59
Query: 120 HLISTMTKKMKE 131
+ M KK+ E
Sbjct: 60 DIHERMGKKLTE 71
>gi|115511012 coiled-coil domain containing 136 [Homo sapiens]
Length = 1154
Score = 29.6 bits (65), Expect = 0.83
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 41 EDSQAFTQQVHQCIECCPVPLAQVQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKE 100
E+ A ++ +C+EC P+A +E+++ Q L + + + S+D +
Sbjct: 893 EELDACEREFKECMECLEKPMAPQND--KNEIKELQTKLRELQL----QYQASMDEQGRL 946
Query: 101 LQVKQQLDGCVTKCVDDHIHLISTMTKKMKEA 132
L V++QL+G + C ++ L +KEA
Sbjct: 947 LVVQEQLEGQLQCCQEELRQLREKRPSVVKEA 978
>gi|110347451 platelet/endothelial cell adhesion molecule [Homo
sapiens]
Length = 738
Score = 29.3 bits (64), Expect = 1.1
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 2 VELQQLRVQEVVDSMVKSLERENIWK---TQGLMFWCSASCCEDSQAFTQQVHQCIECCP 58
+ Q L+ +V+++ K+ ++K T+ + + C A C +V + P
Sbjct: 440 ISYQLLKTSKVLENSTKNSNDPAVFKDNPTEDVEYQCVADNCHSHAKMLSEVLRVKVIAP 499
Query: 59 VPLAQVQALVTSELEKFQDHLARCTMH 85
V Q+ L + +E +D + +C ++
Sbjct: 500 VDEVQISILSSKVVESGEDIVLQCAVN 526
>gi|40217847 activating signal cointegrator 1 complex subunit 3-like 1
[Homo sapiens]
Length = 2136
Score = 28.9 bits (63), Expect = 1.4
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 42 DSQAFTQQVHQCIECCPVPLAQVQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKE- 100
D+Q + ++H ++ P+ V +V QD RC + C KD E
Sbjct: 1665 DTQYYNGKIHAYVD---YPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEP 1721
Query: 101 LQVKQQLDGCVTKCVDDHIHL-ISTMTKKMKE 131
L V+ LD C+ DH + I T T + K+
Sbjct: 1722 LPVESHLD----HCMHDHFNAEIVTKTIENKQ 1749
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 28.1 bits (61), Expect = 2.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 26 WKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVPLAQVQALVTSEL 72
W+TQ + C+ C E +AFT ++CI CCP + V SE+
Sbjct: 336 WRTQ--LRQCTVHCKE--KAFTY--NECIACCPASCHPRASCVDSEI 376
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 28.1 bits (61), Expect = 2.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 26 WKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVPLAQVQALVTSEL 72
W+TQ + C+ C E +AFT ++CI CCP + V SE+
Sbjct: 408 WRTQ--LRQCTVHCKE--KAFTY--NECIACCPASCHPRASCVDSEI 448
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 28.1 bits (61), Expect = 2.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 26 WKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVPLAQVQALVTSEL 72
W+TQ + C+ C E +AFT ++CI CCP + V SE+
Sbjct: 336 WRTQ--LRQCTVHCKE--KAFTY--NECIACCPASCHPRASCVDSEI 376
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 28.1 bits (61), Expect = 2.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 26 WKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVPLAQVQALVTSEL 72
W+TQ + C+ C E +AFT ++CI CCP + V SE+
Sbjct: 408 WRTQ--LRQCTVHCKE--KAFTY--NECIACCPASCHPRASCVDSEI 448
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 28.1 bits (61), Expect = 2.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 26 WKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVPLAQVQALVTSEL 72
W+TQ + C+ C E +AFT ++CI CCP + V SE+
Sbjct: 336 WRTQ--LRQCTVHCKE--KAFTY--NECIACCPASCHPRASCVDSEI 376
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 28.1 bits (61), Expect = 2.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 26 WKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVPLAQVQALVTSEL 72
W+TQ + C+ C E +AFT ++CI CCP + V SE+
Sbjct: 408 WRTQ--LRQCTVHCKE--KAFTY--NECIACCPASCHPRASCVDSEI 448
>gi|115511020 Smg-6 homolog, nonsense mediated mRNA decay factor [Homo
sapiens]
Length = 1419
Score = 28.1 bits (61), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 68 VTSELEKFQDHLARCTMH-CNDKAKDSIDAGSKE 100
+T +L D + C +H C DKAKD + A +E
Sbjct: 1345 ITGQLGNNDDLILSCCLHYCKDKAKDFMPASKEE 1378
>gi|26190614 rhotekin 2 [Homo sapiens]
Length = 609
Score = 27.7 bits (60), Expect = 3.1
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 5 QQLRVQEVVDSMVKSLERENIWKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVPLAQV 64
Q +QE +D ++ RE IWK L QV ++ V A++
Sbjct: 20 QDCNIQEKIDLEIRM--REGIWKLLSL------------STQKDQVLHAVKNLMVCNARL 65
Query: 65 QALVTSELEKFQDHLARCTMHCNDK 89
A TSEL+K ++ +A T C+ K
Sbjct: 66 MAY-TSELQKLEEQIANQTGRCDVK 89
>gi|42475941 zinc finger protein 261 [Homo sapiens]
Length = 1370
Score = 27.3 bits (59), Expect = 4.1
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 26 WKTQGLMFWCSASCCEDSQAFTQQVHQCIEC 56
W+ Q F C CCED + V QC C
Sbjct: 607 WQDQVFQF-CCRDCCEDFKRLRGVVSQCEHC 636
>gi|4827067 zinc finger protein 261 [Homo sapiens]
Length = 1370
Score = 27.3 bits (59), Expect = 4.1
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 26 WKTQGLMFWCSASCCEDSQAFTQQVHQCIEC 56
W+ Q F C CCED + V QC C
Sbjct: 607 WQDQVFQF-CCRDCCEDFKRLRGVVSQCEHC 636
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 26.9 bits (58), Expect = 5.4
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 24 NIWKTQGLMFWCSASCCEDSQAFTQQVHQCIECCPVP 60
++W +G C C ++ F + QC+ CP P
Sbjct: 1199 DVWGLEG----CYPKCPPEAPIFDEDKMQCVATCPTP 1231
>gi|224586817 golgi apparatus protein 1 isoform 3 [Homo sapiens]
Length = 1179
Score = 26.6 bits (57), Expect = 7.0
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 71 ELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHIH 120
ELE QDHL + C D + + S+++Q++ L + + H
Sbjct: 656 ELECLQDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCH 705
>gi|224586815 golgi apparatus protein 1 isoform 2 [Homo sapiens]
Length = 1192
Score = 26.6 bits (57), Expect = 7.0
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 71 ELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHIH 120
ELE QDHL + C D + + S+++Q++ L + + H
Sbjct: 645 ELECLQDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCH 694
>gi|54633312 golgi apparatus protein 1 isoform 1 [Homo sapiens]
Length = 1203
Score = 26.6 bits (57), Expect = 7.0
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 71 ELEKFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCVDDHIH 120
ELE QDHL + C D + + S+++Q++ L + + H
Sbjct: 656 ELECLQDHLDDLVVECRDIVGNLTELESEDIQIEALLMRACEPIIQNFCH 705
>gi|21361749 ubiquitin thioesterase 49 [Homo sapiens]
Length = 640
Score = 26.6 bits (57), Expect = 7.0
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 43 SQAFTQQVHQCIECCPVPLAQVQALVTSELEKF------QDHLARCTMHCNDKAKDS 93
S F ++ H CIE VPL Q + L+T L KF + + C CN K + S
Sbjct: 472 SLEFPERYH-CIEKGFVPLNQTECLLTEMLAKFTETEALEGRIYACD-QCNSKRRKS 526
>gi|126157477 hypothetical protein LOC79680 [Homo sapiens]
Length = 364
Score = 26.6 bits (57), Expect = 7.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 41 EDSQAFTQQVHQCIECCPVPLAQVQALVTSELEKFQDHLAR 81
+D +F + + + CP+PLA Q V +L + +LAR
Sbjct: 180 QDPNSFAE--YHAVVTCPLPLASSQLPVAPQLPVVRQYLAR 218
>gi|110611218 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 26.2 bits (56), Expect = 9.2
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 69 TSELE-KFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKC--VDDHIHLISTM 125
TS LE + + H+A + C + AK+ L+ + QLD ++ D + L+
Sbjct: 765 TSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQ 824
Query: 126 TKKMKEAV 133
+MK V
Sbjct: 825 LSEMKSHV 832
>gi|110611220 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 26.2 bits (56), Expect = 9.2
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 69 TSELE-KFQDHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKC--VDDHIHLISTM 125
TS LE + + H+A + C + AK+ L+ + QLD ++ D + L+
Sbjct: 765 TSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQ 824
Query: 126 TKKMKEAV 133
+MK V
Sbjct: 825 LSEMKSHV 832
>gi|169218225 PREDICTED: similar to U5 snRNP-specific 200kD protein,
partial [Homo sapiens]
Length = 1700
Score = 26.2 bits (56), Expect = 9.2
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 42 DSQAFTQQVHQCIECCPVPLAQVQALVTSELEKFQDHLARCTMHCNDKAKDSIDAGSKE- 100
D+ + ++H ++ P+ V +V QD RC + C KD E
Sbjct: 1229 DTLYYNGKIHAYVD---YPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEP 1285
Query: 101 LQVKQQLDGCVTKCVDDHIHL-ISTMTKKMKE 131
L V+ LD C+ DH + I T T + K+
Sbjct: 1286 LPVESHLD----HCMHDHFNAEIVTKTIENKQ 1313
>gi|148727298 keratin associated protein 10-6 [Homo sapiens]
Length = 365
Score = 26.2 bits (56), Expect = 9.2
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 35 CSASCCEDSQAFTQQVHQ-CIECCPVPLAQVQALVTS 70
C+ASCC S + + H C C VP+ A +S
Sbjct: 293 CTASCCRPSSSVSLLCHPVCKSTCCVPVPSCGASASS 329
>gi|6912712 translocase of inner mitochondrial membrane 8 homolog B
[Homo sapiens]
Length = 83
Score = 26.2 bits (56), Expect = 9.2
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 62 AQVQALVTSELEKFQ------DHLARCTMHCNDKAKDSIDAGSKELQVKQQLDGCVTKCV 115
A++Q LV +E +K Q + C C +K + +D+ + + C++ CV
Sbjct: 10 AELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDS---------RTENCLSSCV 60
Query: 116 DDHIHLISTMTKKMKEAVLSIGK 138
D I +T + + V G+
Sbjct: 61 DRFIDTTLAITSRFAQIVQKGGQ 83
>gi|32140182 keratin associated protein 10-10 [Homo sapiens]
Length = 251
Score = 26.2 bits (56), Expect = 9.2
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 35 CSASCCEDSQAFTQQVHQ-CIECCPVPLAQVQALVTS 70
C+ASCC S + + H C C VP+ A +S
Sbjct: 179 CTASCCRPSSSVSLLCHPVCKSTCCVPVPSCGASASS 215
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.130 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,797,172
Number of Sequences: 37866
Number of extensions: 194905
Number of successful extensions: 569
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 558
Number of HSP's gapped (non-prelim): 46
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.