Guide to the Human Genome
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Name: RTKN2 Sequence: fasta or formatted (609aa) NCBI GI: 26190614
Description:

rhotekin 2

Referenced in:

Inositol Pathways
Rho and Rac

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         38           2
 C cysteine            2.6         16           2
 D aspartate           5.6         34           2
 E glutamate           7.2         44           2
 F phenylalanine       3.9         24           2
 G glycine             3.8         23           2
 H histidine           2.3         14           2
 I isoleucine          5.9         36           2
 K lysine              8.9         54           2
 L leucine             9.9         60           3
 M methionine          3.1         19           1
 N asparagine          4.3         26           1
 P proline             5.4         33           3
 Q glutamine           5.3         32           3
 R arginine            4.4         27           2
 S serine              7.6         46           2
 T threonine           5.4         33           2
 V valine              4.9         30           2
 W tryptophan          1.6         10           1
 Y tyrosine            1.6         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   rhotekin 2 
RTKN                  0.303   rhotekin isoform a 
RTKN                  0.303   rhotekin isoform b 
RTKN                  0.290   rhotekin isoform c 
ANLN                  0.035   anillin, actin binding protein 
AFAP1                 0.010   actin filament associated protein 1 isoform a [Homo...
AFAP1                 0.010   actin filament associated protein 1 
PLEKHA4               0.007   pleckstrin homology domain containing family A memb...
PLEKHA4               0.007   pleckstrin homology domain containing family A memb...
SPTBN2                0.007   spectrin, beta, non-erythrocytic 2 
GRB7                  0.006   growth factor receptor-bound protein 7 
GRB7                  0.006   growth factor receptor-bound protein 7 
APPL2                 0.006   adaptor protein, phosphotyrosine interaction, PH dom...
NRG1                  0.005   neuregulin 1 isoform HRG-beta1d 
NRG1                  0.005   neuregulin 1 isoform HRG-beta1b 
NRG1                  0.005   neuregulin 1 isoform HRG-beta1c 
NRG1                  0.005   neuregulin 1 isoform HRG-beta2 
NRG1                  0.005   neuregulin 1 isoform HRG-beta1 
NRG1                  0.005   neuregulin 1 isoform HRG-alpha 
ARHGAP22              0.005   Rho GTPase activating protein 2 
FGD6                  0.005   FYVE, RhoGEF and PH domain containing 6 
C16orf78              0.005   hypothetical protein LOC123970 
VANGL1                0.005   vang-like 1 
CNKSR1                0.005   connector enhancer of kinase suppressor of Ras 1 [H...
PLEKHA7               0.004   pleckstrin homology domain containing, family A mem...
GC                    0.004   vitamin D-binding protein precursor 
SPTBN1                0.004   spectrin, beta, non-erythrocytic 1 isoform 1 
CASP8AP2              0.004   caspase 8 associated protein 2 
CASP8AP2              0.004   caspase 8 associated protein 2 
CASP8AP2              0.004   caspase 8 associated protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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