Guide to the Human Genome
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Name: MRPL38 Sequence: fasta or formatted (380aa) NCBI GI: 169636418
Description:

mitochondrial ribosomal protein L38

Referenced in:

Lipid Metabolism
Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         30           2
 C cysteine            1.8          7           1
 D aspartate           5.3         20           2
 E glutamate           8.2         31           3
 F phenylalanine       4.7         18           2
 G glycine             4.7         18           1
 H histidine           3.2         12           1
 I isoleucine          2.4          9           1
 K lysine              3.2         12           2
 L leucine             9.7         37           3
 M methionine          1.3          5           1
 N asparagine          1.6          6           1
 P proline             9.2         35           3
 Q glutamine           4.7         18           2
 R arginine           10.3         39           3
 S serine              3.9         15           1
 T threonine           5.5         21           1
 V valine              4.5         17           1
 W tryptophan          2.4          9           2
 Y tyrosine            5.5         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial ribosomal protein L38 
PEBP1                 0.070   prostatic binding protein 
PEBP4                 0.013   phosphatidylethanolamine-binding protein 4 
PLEKHH1               0.013   pleckstrin homology domain containing, family H (wit...
MAP7D2                0.012   MAP7 domain containing 2 
TTN                   0.009   titin isoform N2-A 
GIGYF2                0.009   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.009   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.009   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.009   GRB10 interacting GYF protein 2 isoform b 
TAOK2                 0.008   TAO kinase 2 isoform 1 
TAOK2                 0.008   TAO kinase 2 isoform 2 
UPF2                  0.008   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.008   UPF2 regulator of nonsense transcripts homolog [Homo...
C11orf63              0.008   hypothetical protein LOC79864 isoform 2 
AZI1                  0.008   5-azacytidine induced 1 isoform a 
ICAM2                 0.008   intercellular adhesion molecule 2 precursor 
ICAM2                 0.008   intercellular adhesion molecule 2 precursor 
ICAM2                 0.008   intercellular adhesion molecule 2 precursor 
ICAM2                 0.008   intercellular adhesion molecule 2 precursor 
ICAM2                 0.008   intercellular adhesion molecule 2 precursor 
BAT4                  0.008   HLA-B associated transcript 4 
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
LMAN1                 0.006   lectin, mannose-binding, 1 precursor 
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
FAT3                  0.006   FAT tumor suppressor homolog 3 
FILIP1                0.006   filamin A interacting protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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