Guide to the Human Genome
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Name: ZNF654 Sequence: fasta or formatted (581aa) NCBI GI: 112734859
Description:

zinc finger protein 654

Referenced in:

Myc and Related Functions
Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         24           3
 C cysteine            3.6         21           1
 D aspartate           6.4         37           2
 E glutamate           9.1         53           4
 F phenylalanine       3.8         22           1
 G glycine             3.6         21           2
 H histidine           4.0         23           1
 I isoleucine          5.3         31           1
 K lysine              7.2         42           2
 L leucine             7.2         42           2
 M methionine          1.2          7           1
 N asparagine          6.5         38           2
 P proline             5.3         31           2
 Q glutamine           5.5         32           2
 R arginine            3.8         22           2
 S serine              9.8         57           4
 T threonine           5.3         31           2
 V valine              5.3         31           2
 W tryptophan          0.3          2           1
 Y tyrosine            2.4         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 654 
ZNF292                0.093   zinc finger protein 292 
RLF                   0.054   rearranged L-myc fusion 
ZNF236                0.029   zinc finger protein 236 
JAZF1                 0.026   JAZF zinc finger 1 
GLI3                  0.024   GLI-Kruppel family member GLI3 
ZNF384                0.022   nuclear matrix transcription factor 4 isoform c [Hom...
ZNF384                0.022   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.022   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.022   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.022   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.022   nuclear matrix transcription factor 4 isoform a [Hom...
ZBTB17                0.022   zinc finger and BTB domain containing 17 
ZNF572                0.021   zinc finger protein 572 
ZNF362                0.021   zinc finger protein 362 
ZNF76                 0.020   zinc finger protein 76 (expressed in testis) 
ZSCAN20               0.020   zinc finger protein 31 
MTF1                  0.020   metal-regulatory transcription factor 1 
ZNF143                0.020   zinc finger protein 143 
ZSCAN10               0.020   zinc finger and SCAN domain containing 10 
ZNF131                0.020   zinc finger protein 131 
YY1                   0.019   YY1 transcription factor 
ZBTB41                0.019   zinc finger and BTB domain containing 41 
ZNF341                0.019   zinc finger protein 341 
GLIS2                 0.019   GLIS family zinc finger 2 
ZNF384                0.019   nuclear matrix transcription factor 4 isoform d [Ho...
ZNF471                0.019   zinc finger protein 471 
ZNF319                0.019   zinc finger protein 319 
GLI1                  0.018   GLI family zinc finger 1 isoform 2 
GLI1                  0.018   GLI family zinc finger 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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