Guide to the Human Genome
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Name: ZNF143 Sequence: fasta or formatted (638aa) NCBI GI: 116014328
Description:

zinc finger protein 143

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         54           2
 C cysteine            2.4         15           1
 D aspartate           5.5         35           2
 E glutamate           6.7         43           3
 F phenylalanine       2.0         13           2
 G glycine             8.9         57           3
 H histidine           5.8         37           2
 I isoleucine          4.9         31           1
 K lysine              4.4         28           2
 L leucine             5.3         34           2
 M methionine          1.7         11           1
 N asparagine          2.4         15           1
 P proline             3.6         23           3
 Q glutamine           7.2         46           2
 R arginine            3.3         21           1
 S serine              6.9         44           2
 T threonine          10.5         67           2
 V valine              7.1         45           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.0         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 143 
ZNF76                 0.498   zinc finger protein 76 (expressed in testis) 
ZNF782                0.146   zinc finger protein 782 
ZNF79                 0.143   zinc finger protein 79 
ZNF195                0.142   zinc finger protein 195 isoform 2 
ZNF195                0.142   zinc finger protein 195 isoform 1 
ZNF195                0.142   zinc finger protein 195 isoform 3 
ZFP2                  0.142   zinc finger protein 2 homolog 
ZNF506                0.141   zinc finger protein 506 isoform 1 
ZNF506                0.141   zinc finger protein 506 isoform 2 
ZNF554                0.141   zinc finger protein 554 
ZNF180                0.140   zinc finger protein 180 
ZNF135                0.139   zinc finger protein 135 
ZNF248                0.138   zinc finger protein 248 
ZNF14                 0.138   zinc finger protein 14 
ZNF778                0.138   zinc finger protein 778 
ZNF709                0.138   zinc finger protein 709 isoform b 
ZNF709                0.138   zinc finger protein 709 isoform a 
ZNF45                 0.138   zinc finger protein 45 
ZNF624                0.138   zinc finger protein 624 
ZSCAN2                0.138   zinc finger protein 29 isoform 1 
ZNF208                0.137   zinc finger protein 208 
ZNF629                0.137   zinc finger protein 629 
ZNF333                0.137   zinc finger protein 333 
LOC729747             0.137   similar to zinc finger protein 709 
ZNF91                 0.137   zinc finger protein 91 
ZNF483                0.137   zinc finger protein 483 isoform a 
ZNF436                0.136   zinc finger protein 436 
ZNF436                0.136   zinc finger protein 436 
ZNF175                0.136   zinc finger protein 175 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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