Guide to the Human Genome
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Name: ZNF578 Sequence: fasta or formatted (590aa) NCBI GI: 153791870
Description:

zinc finger protein 578

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         21           2
 C cysteine            6.1         36           1
 D aspartate           2.5         15           1
 E glutamate           8.3         49           2
 F phenylalanine       4.4         26           2
 G glycine             5.8         34           1
 H histidine           8.5         50           2
 I isoleucine          3.9         23           2
 K lysine             10.3         61           1
 L leucine             6.1         36           2
 M methionine          2.0         12           2
 N asparagine          5.1         30           2
 P proline             3.6         21           1
 Q glutamine           4.1         24           2
 R arginine            6.3         37           2
 S serine              9.0         53           2
 T threonine           4.4         26           1
 V valine              2.4         14           1
 W tryptophan          0.2          1           1
 Y tyrosine            3.6         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 578 
ZNF808                0.721   zinc finger protein 808 
ZNF813                0.691   zinc finger protein 813 
ZNF611                0.688   zinc finger protein 611 isoform a 
ZNF611                0.688   zinc finger protein 611 isoform a 
ZNF611                0.688   zinc finger protein 611 isoform a 
ZNF845                0.678   zinc finger protein 845 
ZNF761                0.654   zinc finger protein 761 
ZNF860                0.651   zinc finger protein 860 
ZNF816A               0.645   zinc finger protein 816A 
LOC388559             0.634   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.634   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.634   PREDICTED: hypothetical protein LOC388559 
ZNF765                0.625   zinc finger protein 765 
ZNF468                0.603   zinc finger protein ZNF468 isoform 2 
ZNF600                0.602   zinc finger protein 600 
ZNF611                0.588   zinc finger protein 611 isoform b 
ZNF28                 0.569   zinc finger protein 28 
ZNF468                0.539   zinc finger protein ZNF468 isoform 1 
ZNF701                0.536   zinc finger protein 701 
ZNF665                0.502   zinc finger protein 665 
ZNF415                0.501   zinc finger protein 415 isoform 2 
ZNF347                0.491   zinc finger protein 347 
ZNF160                0.488   zinc finger protein 160 
ZNF160                0.488   zinc finger protein 160 
ZNF160                0.488   zinc finger protein 160 
ZNF616                0.474   zinc finger protein 616 
ZNF836                0.473   zinc finger protein 836 
ZNF480                0.472   zinc finger protein 480 
ZNF415                0.455   zinc finger protein 415 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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