Guide to the Human Genome
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Name: ZNF860 Sequence: fasta or formatted (632aa) NCBI GI: 212549557
Description:

zinc finger protein 860

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         27           2
 C cysteine            5.2         33           1
 D aspartate           3.5         22           2
 E glutamate           7.1         45           2
 F phenylalanine       4.4         28           2
 G glycine             5.9         37           2
 H histidine           8.9         56           2
 I isoleucine          4.7         30           2
 K lysine             11.4         72           2
 L leucine             5.2         33           2
 M methionine          1.3          8           2
 N asparagine          4.7         30           2
 P proline             2.5         16           1
 Q glutamine           4.4         28           2
 R arginine            6.5         41           3
 S serine              7.1         45           2
 T threonine           5.5         35           2
 V valine              3.2         20           2
 W tryptophan          0.6          4           1
 Y tyrosine            3.5         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 860 
ZNF813                0.686   zinc finger protein 813 
ZNF808                0.648   zinc finger protein 808 
LOC388559             0.639   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.639   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.639   PREDICTED: hypothetical protein LOC388559 
ZNF845                0.636   zinc finger protein 845 
ZNF611                0.632   zinc finger protein 611 isoform a 
ZNF611                0.632   zinc finger protein 611 isoform a 
ZNF611                0.632   zinc finger protein 611 isoform a 
ZNF761                0.626   zinc finger protein 761 
ZNF578                0.608   zinc finger protein 578 
ZNF816A               0.608   zinc finger protein 816A 
ZNF28                 0.567   zinc finger protein 28 
ZNF468                0.565   zinc finger protein ZNF468 isoform 2 
ZNF600                0.555   zinc finger protein 600 
ZNF765                0.552   zinc finger protein 765 
ZNF611                0.542   zinc finger protein 611 isoform b 
ZNF468                0.498   zinc finger protein ZNF468 isoform 1 
ZNF665                0.495   zinc finger protein 665 
ZNF616                0.493   zinc finger protein 616 
ZNF701                0.488   zinc finger protein 701 
ZNF160                0.482   zinc finger protein 160 
ZNF160                0.482   zinc finger protein 160 
ZNF160                0.482   zinc finger protein 160 
ZNF836                0.479   zinc finger protein 836 
ZNF347                0.463   zinc finger protein 347 
ZNF415                0.460   zinc finger protein 415 isoform 2 
ZNF534                0.445   zinc finger protein 534 isoform 1 
ZNF528                0.444   zinc finger protein 528 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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