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Search of human proteins with 169212006
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169212006 PREDICTED: similar to hCG1816473 [Homo sapiens]
(256 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169212006 PREDICTED: similar to hCG1816473 [Homo sapiens] 557 e-159
gi|169211572 PREDICTED: similar to hCG1816473 [Homo sapiens] 555 e-158
gi|169211191 PREDICTED: similar to hCG1816473 [Homo sapiens] 553 e-158
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens] 39 0.004
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 36 0.037
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 36 0.037
gi|50428940 mediator complex subunit 25 [Homo sapiens] 36 0.037
gi|75677594 forkhead box D4 [Homo sapiens] 35 0.049
gi|163965366 nascent polypeptide-associated complex alpha subuni... 35 0.049
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.083
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.083
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 35 0.083
gi|52630419 sterol regulatory element binding transcription fact... 34 0.14
gi|22547195 sterol regulatory element binding transcription fact... 34 0.14
gi|158262031 hypothetical protein LOC221545 isoform 1 [Homo sapi... 34 0.14
gi|18959276 forkhead box D4-like 1 [Homo sapiens] 34 0.14
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 33 0.24
gi|57165355 latrophilin 1 isoform 1 precursor [Homo sapiens] 33 0.24
gi|41281557 latrophilin 1 isoform 2 precursor [Homo sapiens] 33 0.24
gi|154426272 hypothetical protein LOC54540 [Homo sapiens] 33 0.24
gi|110832843 TBP-associated factor 4 [Homo sapiens] 33 0.32
gi|63054872 ladybird homeobox 1 [Homo sapiens] 33 0.32
gi|19263349 Cbp/p300-interacting transactivator, with Glu/Asp-ri... 33 0.32
gi|134031945 SCO-spondin [Homo sapiens] 33 0.32
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 32 0.41
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 32 0.41
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 32 0.41
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 32 0.41
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 32 0.41
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 32 0.41
>gi|169212006 PREDICTED: similar to hCG1816473 [Homo sapiens]
Length = 256
Score = 557 bits (1436), Expect = e-159
Identities = 256/256 (100%), Positives = 256/256 (100%)
Query: 1 MGAGVGSSVAWDTSYPAIRRPGLAQQLHPPLLFTHDTSLPTRHCWLTCDTPGSSDARQVL 60
MGAGVGSSVAWDTSYPAIRRPGLAQQLHPPLLFTHDTSLPTRHCWLTCDTPGSSDARQVL
Sbjct: 1 MGAGVGSSVAWDTSYPAIRRPGLAQQLHPPLLFTHDTSLPTRHCWLTCDTPGSSDARQVL 60
Query: 61 LVRGRQELVLSGTRALLGAGGTWDLNHAGSWPVVQAVPGRCGRALQAPGGPPLPSCHPSW 120
LVRGRQELVLSGTRALLGAGGTWDLNHAGSWPVVQAVPGRCGRALQAPGGPPLPSCHPSW
Sbjct: 61 LVRGRQELVLSGTRALLGAGGTWDLNHAGSWPVVQAVPGRCGRALQAPGGPPLPSCHPSW 120
Query: 121 ESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPE 180
ESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPE
Sbjct: 121 ESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPE 180
Query: 181 DAFASPAPCLVDHHSCLLLLCPLPRAWETWEDPEGGSGMCDTSRRLTSSLAGSTLHREPA 240
DAFASPAPCLVDHHSCLLLLCPLPRAWETWEDPEGGSGMCDTSRRLTSSLAGSTLHREPA
Sbjct: 181 DAFASPAPCLVDHHSCLLLLCPLPRAWETWEDPEGGSGMCDTSRRLTSSLAGSTLHREPA 240
Query: 241 AMLPLSCPCGAAERDA 256
AMLPLSCPCGAAERDA
Sbjct: 241 AMLPLSCPCGAAERDA 256
>gi|169211572 PREDICTED: similar to hCG1816473 [Homo sapiens]
Length = 256
Score = 555 bits (1429), Expect = e-158
Identities = 255/256 (99%), Positives = 255/256 (99%)
Query: 1 MGAGVGSSVAWDTSYPAIRRPGLAQQLHPPLLFTHDTSLPTRHCWLTCDTPGSSDARQVL 60
MGAGVGSSVAWDTSYPAIRRPGLAQQLHPPLLFTHDTSLPTRHCWLTCDTPGSSDARQVL
Sbjct: 1 MGAGVGSSVAWDTSYPAIRRPGLAQQLHPPLLFTHDTSLPTRHCWLTCDTPGSSDARQVL 60
Query: 61 LVRGRQELVLSGTRALLGAGGTWDLNHAGSWPVVQAVPGRCGRALQAPGGPPLPSCHPSW 120
LVRGRQELVLSGTRALLGAGGTWDLNHAGSWPVVQAVPGRCGRA QAPGGPPLPSCHPSW
Sbjct: 61 LVRGRQELVLSGTRALLGAGGTWDLNHAGSWPVVQAVPGRCGRAPQAPGGPPLPSCHPSW 120
Query: 121 ESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPE 180
ESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPE
Sbjct: 121 ESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPE 180
Query: 181 DAFASPAPCLVDHHSCLLLLCPLPRAWETWEDPEGGSGMCDTSRRLTSSLAGSTLHREPA 240
DAFASPAPCLVDHHSCLLLLCPLPRAWETWEDPEGGSGMCDTSRRLTSSLAGSTLHREPA
Sbjct: 181 DAFASPAPCLVDHHSCLLLLCPLPRAWETWEDPEGGSGMCDTSRRLTSSLAGSTLHREPA 240
Query: 241 AMLPLSCPCGAAERDA 256
AMLPLSCPCGAAERDA
Sbjct: 241 AMLPLSCPCGAAERDA 256
>gi|169211191 PREDICTED: similar to hCG1816473 [Homo sapiens]
Length = 256
Score = 553 bits (1425), Expect = e-158
Identities = 254/256 (99%), Positives = 254/256 (99%)
Query: 1 MGAGVGSSVAWDTSYPAIRRPGLAQQLHPPLLFTHDTSLPTRHCWLTCDTPGSSDARQVL 60
MGAGVGSSVAWDTSYPAIRRPGLAQQLHPPLLFTHDTSLPTRHCWLTCDTPGSSDARQVL
Sbjct: 1 MGAGVGSSVAWDTSYPAIRRPGLAQQLHPPLLFTHDTSLPTRHCWLTCDTPGSSDARQVL 60
Query: 61 LVRGRQELVLSGTRALLGAGGTWDLNHAGSWPVVQAVPGRCGRALQAPGGPPLPSCHPSW 120
LVRGRQELVLSGTRALLGAGGTWDLNHAGSWPVVQAVPGRCGRA QAPGGPPLPSCHPSW
Sbjct: 61 LVRGRQELVLSGTRALLGAGGTWDLNHAGSWPVVQAVPGRCGRAPQAPGGPPLPSCHPSW 120
Query: 121 ESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPE 180
ESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPE
Sbjct: 121 ESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPE 180
Query: 181 DAFASPAPCLVDHHSCLLLLCPLPRAWETWEDPEGGSGMCDTSRRLTSSLAGSTLHREPA 240
DAF SPAPCLVDHHSCLLLLCPLPRAWETWEDPEGGSGMCDTSRRLTSSLAGSTLHREPA
Sbjct: 181 DAFTSPAPCLVDHHSCLLLLCPLPRAWETWEDPEGGSGMCDTSRRLTSSLAGSTLHREPA 240
Query: 241 AMLPLSCPCGAAERDA 256
AMLPLSCPCGAAERDA
Sbjct: 241 AMLPLSCPCGAAERDA 256
>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
Length = 397
Score = 38.9 bits (89), Expect = 0.004
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 25/129 (19%)
Query: 92 PVVQAVPGRCGRALQAPGGPPLPSCHPSWESP---GQGGLEACPTCAQGSLWLPSAGLCS 148
P QA P R GR + P P +SP QG T + SLW P G
Sbjct: 227 PGAQAAPERLGRGVHDTDPWATPPYCPKIQSPPYSSQG------TTSDASLWTPPQG--- 277
Query: 149 LPACFPSSSWALPQHPPEPLPF------LAPAWPGI---PEDAFASPAPCLVDHHSCLLL 199
C + S P++PP P LA + G+ PE + AP L+ H SC L
Sbjct: 278 ---CPWTQSSPEPRNPPVPWTAAPATLELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRL 334
Query: 200 LCPLP-RAW 207
P R W
Sbjct: 335 QPQTPGRCW 343
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 35.8 bits (81), Expect = 0.037
Identities = 31/92 (33%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 107 APGGPPLPSCHPSWESPGQGGLEACPT---CAQGSLWLPSAGLCSLPACFPSSSW-ALPQ 162
+P G P P CHP S Q G P C GS G C PSS + PQ
Sbjct: 7026 SPWGQPAPFCHPKQGSAPQEGCSPHPAVAPCPPGSF---PPGSCKEAPLVPSSPFLGQPQ 7082
Query: 163 HPPEPL----PFLAPAWPG-IPEDAFASPAPC 189
PP P P + PG I P PC
Sbjct: 7083 APPAPAKASPPLDSKMGPGDISLPGRPKPGPC 7114
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 35.8 bits (81), Expect = 0.037
Identities = 32/97 (32%), Positives = 39/97 (40%), Gaps = 17/97 (17%)
Query: 105 LQAPGGPPLPSCHPSWESPGQGGLEACPTCAQGSLWLPSAGLCSLPACF--PSSSWALPQ 162
L A G P+P+ P+ + G EA PT G PS S PA P +S AL +
Sbjct: 349 LHAKLGKPIPTLEPALATESPPGAEAKPTSPTG----PSVCASSRPALAKRPVASKALCE 404
Query: 163 HPPEP-LPFLAPAW----------PGIPEDAFASPAP 188
PPEP P W PG P + AP
Sbjct: 405 GPPEPQAAGCRPQWGKPAQPKLEGPGAPTQGGSKEAP 441
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 35.8 bits (81), Expect = 0.037
Identities = 57/230 (24%), Positives = 80/230 (34%), Gaps = 36/230 (15%)
Query: 4 GVGSSVAWDTSYPAIRRPGLAQQLHPPLLFTHDTSLPTRHCWLTCDTPGSSDARQVLLVR 63
G+ S+ PA+R L ++ PP L L T S D R ++LVR
Sbjct: 177 GIHFSIVSPRKLPALRL--LFEKAAPPALLEP----------LQPPTDVSQDPRHMVLVR 224
Query: 64 GRQELVLSGTRALLGAGGTWDLNHAGSWPVVQAVPGRCGRALQAPGGPPLPSCHPSWESP 123
G LVL + G L P+ A P G L A PLP P ++ P
Sbjct: 225 G---LVLP----VGGGSAPGPLQSKQPVPLPPAAPS--GATLSAAPQQPLPPVPPQYQVP 275
Query: 124 GQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPEDAF 183
G L A AQ ++ L F + P PF P +P
Sbjct: 276 --GNLSAAQVAAQNAVEAAKNQKAGLGPRFSPITPLQQAAPGVGPPFSQAPAPQLPPGPP 333
Query: 184 ASPAPCLVDHHSCLLLLCPLPRAWETWEDPEGGSGMCDTSRRLTSSLAGS 233
+P P S + + P GSG+ T++ S+AG+
Sbjct: 334 GAPKPPPASQPSLVSTVAP-------------GSGLAPTAQPGAPSMAGT 370
>gi|75677594 forkhead box D4 [Homo sapiens]
Length = 439
Score = 35.4 bits (80), Expect = 0.049
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 112 PLPSCHPSWESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFL 171
PLP+ H + +P G L P Q +P A + P P + L HPP L
Sbjct: 216 PLPAAHAALHNPRPGPLLGAPAPPQP---VPGAYPNTGPGRRPYA--LLHPHPPRYLLLS 270
Query: 172 APAWPGIPEDA----FASPAPCLVDHHSCLLLLCPLPRAW 207
APA+ G P+ A A+PAP +L L R W
Sbjct: 271 APAYAGAPKKAEGADLATPAPFPCCSPHLVLSLGRRARVW 310
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 35.4 bits (80), Expect = 0.049
Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 18/126 (14%)
Query: 78 GAGGTWDLNHAGSWPVVQAVPGRCGRALQAPGGPPLPSCHPSWESPG-QGGL-----EAC 131
G T L A + P + G A +P G P+P P+ P +GGL +
Sbjct: 1069 GGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMP---PAATPPSPKGGLATPPHKGA 1125
Query: 132 PTCAQGSLWLPSAGLCSLP---------ACFPSSSWALPQHPPEPLPFLAPAWPGIPEDA 182
PT + P GL + P A PS L PP+ P A P P+
Sbjct: 1126 PTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGG 1185
Query: 183 FASPAP 188
A+P+P
Sbjct: 1186 LATPSP 1191
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 34.7 bits (78), Expect = 0.083
Identities = 31/93 (33%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 98 PGRCGRALQAPGGPPLPSCHPSWESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSS 157
PG + PGG PLPS + P LE P + P S P S S
Sbjct: 148 PGPPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPS 207
Query: 158 WALPQH---PPEPLPFLAPAWPGIPEDAFASPA 187
P P PL FLAP P +P A +PA
Sbjct: 208 IPTPPDFIPPAPPLAFLAPPPPPVPAPAPPAPA 240
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 34.7 bits (78), Expect = 0.083
Identities = 31/93 (33%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 98 PGRCGRALQAPGGPPLPSCHPSWESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSS 157
PG + PGG PLPS + P LE P + P S P S S
Sbjct: 148 PGPPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPS 207
Query: 158 WALPQH---PPEPLPFLAPAWPGIPEDAFASPA 187
P P PL FLAP P +P A +PA
Sbjct: 208 IPTPPDFIPPAPPLAFLAPPPPPVPAPAPPAPA 240
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 34.7 bits (78), Expect = 0.083
Identities = 31/93 (33%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 98 PGRCGRALQAPGGPPLPSCHPSWESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSS 157
PG + PGG PLPS + P LE P + P S P S S
Sbjct: 148 PGPPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPS 207
Query: 158 WALPQH---PPEPLPFLAPAWPGIPEDAFASPA 187
P P PL FLAP P +P A +PA
Sbjct: 208 IPTPPDFIPPAPPLAFLAPPPPPVPAPAPPAPA 240
>gi|52630419 sterol regulatory element binding transcription factor
1 isoform a [Homo sapiens]
Length = 1177
Score = 33.9 bits (76), Expect = 0.14
Identities = 47/152 (30%), Positives = 62/152 (40%), Gaps = 24/152 (15%)
Query: 118 PSWESPGQGGLE-ACP-TCAQGSLWLPSAGLCSLPACFPSSSWALPQ--HPPEPLPFLAP 173
P + G GG + A P T + GSL P A L S F S A P PP+P P
Sbjct: 79 PPYAGSGAGGTDPASPDTSSPGSLSPPPATLSSSLEAFLSGPQAAPSPLSPPQPAPTPLK 138
Query: 174 AWPGIPEDAFASPAPCLVDHHSCLLLL-----CPLPRAWETWEDPEGGSGMCDTSRRL-- 226
+P +P AF SP P + + L +L PLP A P ++ L
Sbjct: 139 MYPSMP--AF-SPGPGIKEESVPLSILQTPTPQPLPGALLPQSFPAPAPPQFSSTPVLGY 195
Query: 227 --------TSSLAGSTLHREPAAMLPLSCPCG 250
T S G+T ++P LPL+ P G
Sbjct: 196 PSPPGGFSTGSPPGNT--QQPLPGLPLASPPG 225
>gi|22547195 sterol regulatory element binding transcription factor
1 isoform b [Homo sapiens]
Length = 1147
Score = 33.9 bits (76), Expect = 0.14
Identities = 47/152 (30%), Positives = 62/152 (40%), Gaps = 24/152 (15%)
Query: 118 PSWESPGQGGLE-ACP-TCAQGSLWLPSAGLCSLPACFPSSSWALPQ--HPPEPLPFLAP 173
P + G GG + A P T + GSL P A L S F S A P PP+P P
Sbjct: 49 PPYAGSGAGGTDPASPDTSSPGSLSPPPATLSSSLEAFLSGPQAAPSPLSPPQPAPTPLK 108
Query: 174 AWPGIPEDAFASPAPCLVDHHSCLLLL-----CPLPRAWETWEDPEGGSGMCDTSRRL-- 226
+P +P AF SP P + + L +L PLP A P ++ L
Sbjct: 109 MYPSMP--AF-SPGPGIKEESVPLSILQTPTPQPLPGALLPQSFPAPAPPQFSSTPVLGY 165
Query: 227 --------TSSLAGSTLHREPAAMLPLSCPCG 250
T S G+T ++P LPL+ P G
Sbjct: 166 PSPPGGFSTGSPPGNT--QQPLPGLPLASPPG 195
>gi|158262031 hypothetical protein LOC221545 isoform 1 [Homo
sapiens]
Length = 315
Score = 33.9 bits (76), Expect = 0.14
Identities = 43/134 (32%), Positives = 49/134 (36%), Gaps = 37/134 (27%)
Query: 99 GRCGRALQA-------PGGPPLPSCHPSWESPGQGGLEACPTCAQGSLWLPSAGLCSLPA 151
G C RA QA PG P P P W + P W P LP
Sbjct: 13 GPCLRAYQARPQDQLYPGTLPFP---PLWPHSTTTTSPSSPL-----FWSP------LPP 58
Query: 152 CFPSSSWALPQHPPEPLP---FLAPAWPGIPE-DAFASPAPCLVDHHSCLLLL------- 200
P+ LPQ PP PLP L+ AW +P P P L H CL L
Sbjct: 59 RLPTQR--LPQVPPLPLPQIQALSSAWVVLPPGKGEEGPGPEL--HSGCLDGLRSLFEGP 114
Query: 201 -CPLPRAWETWEDP 213
CP P AW ++ P
Sbjct: 115 PCPYPGAWIPFQVP 128
>gi|18959276 forkhead box D4-like 1 [Homo sapiens]
Length = 408
Score = 33.9 bits (76), Expect = 0.14
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 112 PLPSCHPSWESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFL 171
PLP+ H + +P G L P Q +P A + P P + L HPP L
Sbjct: 219 PLPAAHAALHNPRPGPLLGAPALPQP---VPGAYPNTAPGRRPYA--LLHPHPPRYLLLS 273
Query: 172 APAWPGIPEDA 182
APA+ G P+ A
Sbjct: 274 APAYAGAPKKA 284
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 33.1 bits (74), Expect = 0.24
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 149 LPACFPSSSWALPQHPPEPLPFLAPAWPGIPEDAFASPAPCLVDHHSCLLLLCP 202
LPA P+ + LP PP P P + P PG P+ P +C L CP
Sbjct: 300 LPALAPAPACPLPTSPPVPAPHVTPHAPGPPDHPNQPPM------MTCERLPCP 347
>gi|57165355 latrophilin 1 isoform 1 precursor [Homo sapiens]
Length = 1474
Score = 33.1 bits (74), Expect = 0.24
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 138 SLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPEDAFASPAPCLV 191
SL+ A L P+ +P SS P+ P E LP PA PG PE + S P LV
Sbjct: 1383 SLYASGANLRDSPS-YPDSS---PEGPSEALPPPPPAPPGPPEIYYTSRPPALV 1432
>gi|41281557 latrophilin 1 isoform 2 precursor [Homo sapiens]
Length = 1469
Score = 33.1 bits (74), Expect = 0.24
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 138 SLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPEDAFASPAPCLV 191
SL+ A L P+ +P SS P+ P E LP PA PG PE + S P LV
Sbjct: 1378 SLYASGANLRDSPS-YPDSS---PEGPSEALPPPPPAPPGPPEIYYTSRPPALV 1427
>gi|154426272 hypothetical protein LOC54540 [Homo sapiens]
Length = 789
Score = 33.1 bits (74), Expect = 0.24
Identities = 35/133 (26%), Positives = 48/133 (36%), Gaps = 12/133 (9%)
Query: 71 SGTRALLGAGGTWDLNH-------AGSWPVVQAVPGRCGRALQAPGGPPLPS-CHPSWES 122
S + + G G WD + +G W + G +L +P P +P P E
Sbjct: 68 SSSSSCPGNSGDWDPSSFLSAHKLSGLWNSPHSSGAMPGSSLGSP--PTIPGEAFPVSEH 125
Query: 123 PGQGGLEACPTCAQGSLWLPSAGLCSLPACF--PSSSWALPQHPPEPLPFLAPAWPGIPE 180
L A P G P++ + S P+ F P LP P P P A P
Sbjct: 126 HQHSDLTAPPNSPTGHHPQPASLIPSHPSSFGSPPHPHLLPTTPAAPFPAQASECPVAAA 185
Query: 181 DAFASPAPCLVDH 193
A +P PC H
Sbjct: 186 TAPHTPGPCQSSH 198
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 32.7 bits (73), Expect = 0.32
Identities = 38/120 (31%), Positives = 44/120 (36%), Gaps = 9/120 (7%)
Query: 69 VLSGTRALLGAGGTWDLNHAGSWPVVQAVPGRCGRALQAPGGPPLPSCHPSWESPGQGGL 128
V+SG+ A GA G A P P GRA GGP P SP + +
Sbjct: 62 VVSGSPA--GAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQ----RPGPPSPRRPLV 115
Query: 129 EACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPEDAFASPAP 188
A P L P G S +C P + A PEP P PA P P A P
Sbjct: 116 PAGPAPPAAKLRPPPEG--SAGSCAPVPAAAAVAAGPEPAP-AGPAKPAGPAALAARAGP 172
>gi|63054872 ladybird homeobox 1 [Homo sapiens]
Length = 281
Score = 32.7 bits (73), Expect = 0.32
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 99 GRCGRALQAPGGPPLPSCHPSWESPGQGGLEACP 132
G CGRA PG P LP P ++PG G L+ P
Sbjct: 223 GGCGRAKSRPGSPVLPPGAP--KAPGAGALQLSP 254
>gi|19263349 Cbp/p300-interacting transactivator, with Glu/Asp-rich
carboxy-terminal domain, 4 [Homo sapiens]
Length = 184
Score = 32.7 bits (73), Expect = 0.32
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 92 PVVQAVPGRCGRALQAPGGPPLPSCHPSWESP-----GQGGLEA 130
PV PGR APGGPP P PS +P GG++A
Sbjct: 91 PVATPYPGRAAAPPNAPGGPPGPQPAPSAAAPPPPAHALGGMDA 134
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 32.7 bits (73), Expect = 0.32
Identities = 39/143 (27%), Positives = 54/143 (37%), Gaps = 21/143 (14%)
Query: 102 GRALQAPGGPPLPSCHPSWESPG---QGGLEAC-PTCAQGSLWLPSAGLCSLPA---C-F 153
G++L G P SC SPG Q G C PTC L GLC PA C +
Sbjct: 3532 GQSLHPCGQPCPRSCQDL--SPGSVCQPGSVGCQPTCGCPLGQLSQDGLCVPPAHCRCQY 3589
Query: 154 PSSSWALPQHPPEPLPFLAPAWPGIPEDAFASPAPCLVDHHSCLLLL--------CPLPR 205
+ +P++ +W + E PC D+ +C+ + CP P
Sbjct: 3590 QPGAMGIPENQSRSAGSRFSSWESL-EPGEVVTGPC--DNCTCVAGILQCQEVPDCPDPG 3646
Query: 206 AWETWEDPEGGSGMCDTSRRLTS 228
W +W E S C +L S
Sbjct: 3647 VWSSWGPWEDCSVSCGGGEQLRS 3669
Score = 30.0 bits (66), Expect = 2.1
Identities = 24/85 (28%), Positives = 29/85 (34%), Gaps = 20/85 (23%)
Query: 129 EACPTC--AQGSLWLPSAGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPEDAFASP 186
+ C C A S+W + C L F P PLP P D F S
Sbjct: 2496 DGCVDCVLAPWSVWSSCSRSCGLGLTFQRQELLRP-----PLP-----GGSCPRDRFRS- 2544
Query: 187 APCLVDHHSCLLLLCPLPRAWETWE 211
SC + CP+ AW WE
Sbjct: 2545 -------QSCFVQACPVAGAWAMWE 2562
Score = 29.6 bits (65), Expect = 2.7
Identities = 45/182 (24%), Positives = 52/182 (28%), Gaps = 62/182 (34%)
Query: 91 WPVVQAVPGRC-------GRALQAPGGPPLPSCHPSWESPGQGGLEACPTCAQGSLWLPS 143
WP V + G C G L PGG PLP +W S W P
Sbjct: 2685 WPGVSFLLGNCSQCVCEKGELLCQPGGCPLPCGWSAWSS-----------------WAPC 2727
Query: 144 AGLCSLPACFPSSSWALPQHPPEPLPFLAPAWPGIPEDAFASPAPCLVDH---HSCLLLL 200
C + + P +PP AW G APC D C +
Sbjct: 2728 DRSCGSGV---RARFRSPSNPP-------AAWGG---------APCEGDRQELQGCHTVC 2768
Query: 201 CPLPRAWETWED----------PEGGSGMCDTSRRL----TSSLAGSTLHREPAAMLPLS 246
W W P GG G SR SS G EP + P
Sbjct: 2769 GTEVFGWTPWTSWSSCSQSCLAPGGGPGWRSRSRLCPSPGDSSCPGDATQEEPCS--PPV 2826
Query: 247 CP 248
CP
Sbjct: 2827 CP 2828
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 32.3 bits (72), Expect = 0.41
Identities = 28/90 (31%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 108 PGGPPLPSCHPSWESPGQGGLEACPTCAQGSLWLPSA----GLCSLPACFPSSSWALP-- 161
PG PP P + P QG P W P A + A P+++WA
Sbjct: 528 PGAPPHAGGPPPHQYPPQGWGNTYPQ------WQPPAPHDPSKAAAAAADPNAAWAAYYS 581
Query: 162 ---QHPPEPLPFLAPAWPGIPEDAFASPAP 188
Q PP P+P APA P P P P
Sbjct: 582 HYYQQPPGPVPGPAPA-PAAPPAQGEPPQP 610
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 32.3 bits (72), Expect = 0.41
Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 104 ALQAPGGPPLPSCHPSWESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQH 163
++ AP P P+ P + G A PT Q ++G PAC P P
Sbjct: 585 SVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTG 644
Query: 164 PPEPLPFLAP 173
PP P+P AP
Sbjct: 645 PPGPIPVPAP 654
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 32.3 bits (72), Expect = 0.41
Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 104 ALQAPGGPPLPSCHPSWESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQH 163
++ AP P P+ P + G A PT Q ++G PAC P P
Sbjct: 585 SVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTG 644
Query: 164 PPEPLPFLAP 173
PP P+P AP
Sbjct: 645 PPGPIPVPAP 654
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 32.3 bits (72), Expect = 0.41
Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 104 ALQAPGGPPLPSCHPSWESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQH 163
++ AP P P+ P + G A PT Q ++G PAC P P
Sbjct: 585 SVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTG 644
Query: 164 PPEPLPFLAP 173
PP P+P AP
Sbjct: 645 PPGPIPVPAP 654
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 32.3 bits (72), Expect = 0.41
Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 104 ALQAPGGPPLPSCHPSWESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSSWALPQH 163
++ AP P P+ P + G A PT Q ++G PAC P P
Sbjct: 446 SVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTG 505
Query: 164 PPEPLPFLAP 173
PP P+P AP
Sbjct: 506 PPGPIPVPAP 515
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 32.3 bits (72), Expect = 0.41
Identities = 29/79 (36%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 98 PGRCGRALQAPGGPPLPSCHPSWESPGQGGLEACPTCAQGSLWLPSAGLCSLPACFPSSS 157
P +C + GP LP PS + Q PT A G LP G PAC PS
Sbjct: 647 PAQCVCSPPVSEGPVLPQSLPSLGAYQQ------PTAAPG---LP-VGSVPAPACPPS-- 694
Query: 158 WALPQHPPEPLPFLAPAWP 176
L QH P+P AP P
Sbjct: 695 --LQQHFPDPAMSFAPVLP 711
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,472,522
Number of Sequences: 37866
Number of extensions: 907623
Number of successful extensions: 3446
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 3246
Number of HSP's gapped (non-prelim): 430
length of query: 256
length of database: 18,247,518
effective HSP length: 100
effective length of query: 156
effective length of database: 14,460,918
effective search space: 2255903208
effective search space used: 2255903208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.