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Search of human proteins with 169210281
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169210281 PREDICTED: similar to M-phase phosphoprotein 10
(U3 small nucleolar ribonucleoprotein) [Homo sapiens]
(213 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169210281 PREDICTED: similar to M-phase phosphoprotein 10 (U3... 439 e-123
gi|169210051 PREDICTED: similar to M-phase phosphoprotein 10 (U3... 439 e-123
gi|169210488 PREDICTED: similar to M-phase phosphoprotein 10 (U3... 435 e-122
gi|31317305 M-phase phosphoprotein 10 [Homo sapiens] 241 3e-64
gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 140 1e-33
gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 140 1e-33
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens] 53 2e-07
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 50 1e-06
gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo ... 47 2e-05
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 45 5e-05
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 45 5e-05
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 45 6e-05
gi|21735415 centromere protein B [Homo sapiens] 45 6e-05
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 44 8e-05
gi|4503257 death-domain associated protein isoform a [Homo sapiens] 44 1e-04
gi|215422388 death-domain associated protein isoform a [Homo sap... 44 1e-04
gi|215422366 death-domain associated protein isoform b [Homo sap... 44 1e-04
gi|4504487 histidine rich calcium binding protein precursor [Hom... 43 2e-04
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 43 2e-04
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 43 2e-04
gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homo... 43 2e-04
gi|61175239 transcription elongation factor A (SII)-like 5 [Homo... 43 2e-04
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 42 4e-04
gi|87299628 biorientation of chromosomes in cell division 1-like... 42 4e-04
gi|60498973 myelin transcription factor 1-like [Homo sapiens] 42 4e-04
gi|55741709 RNA binding motif protein 25 [Homo sapiens] 42 5e-04
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens] 42 5e-04
gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens] 42 5e-04
gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isof... 42 5e-04
gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isof... 42 5e-04
>gi|169210281 PREDICTED: similar to M-phase phosphoprotein 10 (U3
small nucleolar ribonucleoprotein) [Homo sapiens]
Length = 213
Score = 439 bits (1128), Expect = e-123
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MRADPWLRCYWGRTWTRVADPWQIVELGEESEEQECEEDGSETETGGQEDLEDLQEEEEV 60
MRADPWLRCYWGRTWTRVADPWQIVELGEESEEQECEEDGSETETGGQEDLEDLQEEEEV
Sbjct: 1 MRADPWLRCYWGRTWTRVADPWQIVELGEESEEQECEEDGSETETGGQEDLEDLQEEEEV 60
Query: 61 SDMGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKS 120
SDMGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKS
Sbjct: 61 SDMGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKS 120
Query: 121 IIDEKFFQLSEMEAYLENREKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHD 180
IIDEKFFQLSEMEAYLENREKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHD
Sbjct: 121 IIDEKFFQLSEMEAYLENREKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHD 180
Query: 181 DELGSNKMMKLLKKKQKKEAFLKCEYFETSFTL 213
DELGSNKMMKLLKKKQKKEAFLKCEYFETSFTL
Sbjct: 181 DELGSNKMMKLLKKKQKKEAFLKCEYFETSFTL 213
>gi|169210051 PREDICTED: similar to M-phase phosphoprotein 10 (U3
small nucleolar ribonucleoprotein) [Homo sapiens]
Length = 213
Score = 439 bits (1128), Expect = e-123
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MRADPWLRCYWGRTWTRVADPWQIVELGEESEEQECEEDGSETETGGQEDLEDLQEEEEV 60
MRADPWLRCYWGRTWTRVADPWQIVELGEESEEQECEEDGSETETGGQEDLEDLQEEEEV
Sbjct: 1 MRADPWLRCYWGRTWTRVADPWQIVELGEESEEQECEEDGSETETGGQEDLEDLQEEEEV 60
Query: 61 SDMGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKS 120
SDMGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKS
Sbjct: 61 SDMGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKS 120
Query: 121 IIDEKFFQLSEMEAYLENREKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHD 180
IIDEKFFQLSEMEAYLENREKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHD
Sbjct: 121 IIDEKFFQLSEMEAYLENREKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHD 180
Query: 181 DELGSNKMMKLLKKKQKKEAFLKCEYFETSFTL 213
DELGSNKMMKLLKKKQKKEAFLKCEYFETSFTL
Sbjct: 181 DELGSNKMMKLLKKKQKKEAFLKCEYFETSFTL 213
>gi|169210488 PREDICTED: similar to M-phase phosphoprotein 10 (U3
small nucleolar ribonucleoprotein) [Homo sapiens]
Length = 213
Score = 435 bits (1119), Expect = e-122
Identities = 212/213 (99%), Positives = 212/213 (99%)
Query: 1 MRADPWLRCYWGRTWTRVADPWQIVELGEESEEQECEEDGSETETGGQEDLEDLQEEEEV 60
MRADPWLRCYWGRTWTRVADPWQIVELGEESEEQECEEDGSETETGGQEDLEDLQEEEEV
Sbjct: 1 MRADPWLRCYWGRTWTRVADPWQIVELGEESEEQECEEDGSETETGGQEDLEDLQEEEEV 60
Query: 61 SDMGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKS 120
SDMGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKS
Sbjct: 61 SDMGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKS 120
Query: 121 IIDEKFFQLSEMEAYLENREKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHD 180
IIDEKFFQLSEMEAYLENREKEEERKDDNDDES KSSRNVNNKDFFDPVESDEDIASDHD
Sbjct: 121 IIDEKFFQLSEMEAYLENREKEEERKDDNDDESVKSSRNVNNKDFFDPVESDEDIASDHD 180
Query: 181 DELGSNKMMKLLKKKQKKEAFLKCEYFETSFTL 213
DELGSNKMMKLLKKKQKKEAFLKCEYFETSFTL
Sbjct: 181 DELGSNKMMKLLKKKQKKEAFLKCEYFETSFTL 213
>gi|31317305 M-phase phosphoprotein 10 [Homo sapiens]
Length = 681
Score = 241 bits (616), Expect = 3e-64
Identities = 131/201 (65%), Positives = 149/201 (74%), Gaps = 27/201 (13%)
Query: 25 VELGEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRK 84
+ L ESEEQE EEDGSE E +EDLEDL EEEEVSDMG D+PE+G++A NSSK +LRK
Sbjct: 104 ISLLPESEEQEREEDGSEIEADDKEDLEDL-EEEEVSDMGNDDPEMGERAENSSKSDLRK 162
Query: 85 SPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEE 144
SPVFSDEDSDLDFDISKLEQQSKVQN G GKPREKSI+D+KFF+LSEMEAYLEN EKEEE
Sbjct: 163 SPVFSDEDSDLDFDISKLEQQSKVQNKGQGKPREKSIVDDKFFKLSEMEAYLENIEKEEE 222
Query: 145 RKDDNDDE--------------------------SGKSSRNVNNKDFFDPVESDEDIASD 178
RKDDND+E SGKSSRN+ KDFFDPVESDEDI +
Sbjct: 223 RKDDNDEEEEDIDFFEDIDSDEDEGGLFGSKKLKSGKSSRNLKYKDFFDPVESDEDITNV 282
Query: 179 HDDELGSNKMMKLLKKKQKKE 199
HDDEL SNK + +++ +E
Sbjct: 283 HDDELDSNKEDDEIAEEEAEE 303
>gi|239745153 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 140 bits (352), Expect = 1e-33
Identities = 79/143 (55%), Positives = 99/143 (69%), Gaps = 9/143 (6%)
Query: 63 MGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSII 122
MGGDNPEV ++A NSSKF+ KSPV SDEDSDLDF I+KLEQQSKV+N GHGKPREKSI
Sbjct: 1 MGGDNPEVSERA-NSSKFDPTKSPVLSDEDSDLDFHINKLEQQSKVRNKGHGKPREKSIA 59
Query: 123 DEKFFQLSEMEAYLENREKEEERKDDNDDESGKSSRNVNNKDFFDPV-------ESDEDI 175
DEKFFQLSEMEAYLENR++ ++ D DD+ +S + K+ V E+ ED
Sbjct: 60 DEKFFQLSEMEAYLENRKRRGTKRWDEDDDLEESEDSKQCKESLKRVTFTLPDDEAIEDA 119
Query: 176 ASDHDDELGSNKMMKLLKKKQKK 198
H + S+++ KK+Q+K
Sbjct: 120 GVSHVKK-NSDEVKSSFKKRQEK 141
Score = 35.8 bits (81), Expect = 0.028
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 22 WQIVELGEESEE--QECEEDGSETETGGQEDLEDLQEEEEVSDMGGDN-PEVGKKARNSS 78
W+ E E EE Q+ EE E E QE+ E +QE+EE + E +K
Sbjct: 430 WRQEEKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQEEKIQRQEEKIQEQEEKTWRQE 489
Query: 79 KFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLEN 138
K ++ ++ E+ + EQ+ K+Q R++ + E+ +L + E E
Sbjct: 490 KLLKQEEKIWEQEEKMWRQEEKMWEQEEKMQEQEEKMQRQEEKMREQEVRLWQQE---EK 546
Query: 139 REKEEERKDDNDDESGK 155
+++E R + ++ GK
Sbjct: 547 MQEQEVRLQELEERLGK 563
>gi|239745127 PREDICTED: similar to Putative golgin subfamily A
member 6-like protein 6 [Homo sapiens]
Length = 655
Score = 140 bits (352), Expect = 1e-33
Identities = 79/143 (55%), Positives = 99/143 (69%), Gaps = 9/143 (6%)
Query: 63 MGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSII 122
MGGDNPEV ++A NSSKF+ KSPV SDEDSDLDF I+KLEQQSKV+N GHGKPREKSI
Sbjct: 1 MGGDNPEVSERA-NSSKFDPTKSPVLSDEDSDLDFHINKLEQQSKVRNKGHGKPREKSIA 59
Query: 123 DEKFFQLSEMEAYLENREKEEERKDDNDDESGKSSRNVNNKDFFDPV-------ESDEDI 175
DEKFFQLSEMEAYLENR++ ++ D DD+ +S + K+ V E+ ED
Sbjct: 60 DEKFFQLSEMEAYLENRKRRGTKRWDEDDDLEESEDSKQCKESLKRVTFTLPDDEAIEDA 119
Query: 176 ASDHDDELGSNKMMKLLKKKQKK 198
H + S+++ KK+Q+K
Sbjct: 120 GVSHVKK-NSDEVKSSFKKRQEK 141
Score = 35.8 bits (81), Expect = 0.028
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 22 WQIVELGEESEE--QECEEDGSETETGGQEDLEDLQEEEEVSDMGGDN-PEVGKKARNSS 78
W+ E E EE Q+ EE E E QE+ E +QE+EE + E +K
Sbjct: 430 WRQEEKIRELEEMMQDQEEKLREVEEKMQEEEEKMQEQEEKIQRQEEKIQEQEEKTWRQE 489
Query: 79 KFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLEN 138
K ++ ++ E+ + EQ+ K+Q R++ + E+ +L + E E
Sbjct: 490 KLLKQEEKIWEQEEKMWRQEEKMWEQEEKMQEQEEKMQRQEEKMREQEVRLWQQE---EK 546
Query: 139 REKEEERKDDNDDESGK 155
+++E R + ++ GK
Sbjct: 547 MQEQEVRLQELEERLGK 563
>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
Length = 1726
Score = 53.1 bits (126), Expect = 2e-07
Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 18/184 (9%)
Query: 23 QIVELGEESEEQECEEDGSETETGG------QEDLEDLQEEEEVSDMGGDNPEVGKKARN 76
+ VE ++ EE+E E + E G +D ED EE+E SD G +VG K R
Sbjct: 29 KFVEEEDDDEEEEEENLDDQDEQGNLKGFINDDDDEDEGEEDEGSDSGDSEDDVGHKKRK 88
Query: 77 SSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYL 136
+ F+ D D DFD+ + KV+ G R K + D++ E E
Sbjct: 89 RTSFD--------DRLEDDDFDLIEENLGVKVKR-GQKYRRVKKMSDDE--DDDEEEYGK 137
Query: 137 ENREKEEERKDDNDDESGKSSRNVNNKDFFDPVESDE-DIASDHDDELGSNKMMKLLKKK 195
E EKE ++ D G+ + P E +E D SD DD + + L K K
Sbjct: 138 EEHEKEAIAEEIFQDGEGEEGQEAMEAPMAPPEEEEEDDEESDIDDFIVDDDGQPLKKPK 197
Query: 196 QKKE 199
+K+
Sbjct: 198 WRKK 201
Score = 35.4 bits (80), Expect = 0.036
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 24/167 (14%)
Query: 37 EEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLD 96
+ED E E G +E ++ EE D G+ + +A + E + DE+SD+D
Sbjct: 127 DEDDDEEEYGKEEHEKEAIAEEIFQDGEGEEGQEAMEAPMAPPEEEEED----DEESDID 182
Query: 97 FDI--------SKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKDD 148
I K + + K+ +E I F E E Y E E+ EE +
Sbjct: 183 DFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYNEYDEELEEEYEY 242
Query: 149 NDDES---------GKSSRNVNNKDFF---DPVESDEDIASDHDDEL 183
DDE+ + + V+ + F +P E + +D D+E+
Sbjct: 243 EDDEAEGEIRVRPKKTTKKRVSRRSIFEMYEPSELESSHLTDQDNEI 289
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 50.1 bits (118), Expect = 1e-06
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 17/174 (9%)
Query: 31 SEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVFSD 90
+EE E E++ SE E GG E +D E VS P+ K N K + +K +D
Sbjct: 16 AEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPK--KLKENKCKGKRKKKEGSND 73
Query: 91 EDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKDDND 150
E S+ + D+ + + +S+ + K ++K + D+K E +A R+K++E +DDND
Sbjct: 74 ELSENEEDLEE-KSESEGSDYSPNKKKKKKLKDKK-----EKKA---KRKKKDEDEDDND 124
Query: 151 D---ESGKSSRNVNNKDFFDPVE---SDEDIASDHDDELGSNKMMKLLKKKQKK 198
D + KSS + + D V+ S+ED + + + S + L+ KK K
Sbjct: 125 DGCLKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFSQFLRPLIAKKNPK 178
>gi|46852388 cell-cycle and apoptosis regulatory protein 1 [Homo
sapiens]
Length = 1150
Score = 46.6 bits (109), Expect = 2e-05
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 90 DEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKDDN 149
++D D K +++ + T KP+ + D+K + + + R+KE++RKDD+
Sbjct: 801 EKDKKSKKDERKDKKEERDDETDEPKPKRRKSGDDK-----DKKEDRDERKKEDKRKDDS 855
Query: 150 DDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMK 190
D+ + NN+D +DP+E++E A D +D+ +M K
Sbjct: 856 KDDD--ETEEDNNQDEYDPMEAEE--AEDEEDDRDEEEMTK 892
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 45.1 bits (105), Expect = 5e-05
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 29/189 (15%)
Query: 26 ELGEESEEQECEEDGSE--TETGGQEDLEDLQEEEEVSDMGGD--------NPEVGKKAR 75
E E+ E+E +ED SE +E G + + E+ E+++ + G + + E+ +
Sbjct: 538 ESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDS 597
Query: 76 NSSKFELRKSP-VFSDEDSDLDFDISKLEQQS------KVQNTGHGKPREKSIIDEKFFQ 128
+S+FE S V +E S+ +FD E++ KV + + ++ DEK +
Sbjct: 598 ENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLE 657
Query: 129 LSEMEAYLENR-EKEEERKDDNDDES--GKSSRNVNNKDF---------FDPVESDEDIA 176
++ +A + EK E DD +DE GK + + K F FD E +
Sbjct: 658 AADKKAEEGDADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDSSEKL 717
Query: 177 SDHDDELGS 185
D DE G+
Sbjct: 718 FDDSDERGT 726
Score = 37.0 bits (84), Expect = 0.012
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 26 ELGEESEEQECEEDGSETETGGQEDLEDLQE-------EEEVSDMGGDNPEVGKKARNSS 78
E +++ + +CEE+G E+ + E +E EE+ S+ D K++ + S
Sbjct: 502 ESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGS 561
Query: 79 KFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLEN 138
+ E ++ + + DLD + S+ E V + K E++ + F+ E L+
Sbjct: 562 EREFEENGL----EKDLDEEGSEKELHENVLD----KELEENDSENSEFEDDGSEKVLDE 613
Query: 139 REKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELG 184
E E +D+D++ + + K F D ESDE ++ DE G
Sbjct: 614 EGSEREFDEDSDEK--EEEEDTYEKVFDD--ESDEKEDEEYADEKG 655
Score = 32.0 bits (71), Expect = 0.40
Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 16/177 (9%)
Query: 30 ESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDN-------PEVGKKARNSSKFEL 82
+ ++ E EDG E E G E+ E+ ++ G P+ G + S K
Sbjct: 427 DEKKFEKTEDGGEFEEGASENNAKESSPEKEAEEGCPEKESEEGCPKRGFEGSCSQKESE 486
Query: 83 RKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKE 142
+PV E+ + K ++ + G K E + E SE E +
Sbjct: 487 EGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKE-----SEEEV----GPTK 537
Query: 143 EERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMKLLKKKQKKE 199
E +DD++ ES + ++D + + + D D+E ++ + + K+ +E
Sbjct: 538 ESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEE 594
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 45.1 bits (105), Expect = 5e-05
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 29/189 (15%)
Query: 26 ELGEESEEQECEEDGSE--TETGGQEDLEDLQEEEEVSDMGGD--------NPEVGKKAR 75
E E+ E+E +ED SE +E G + + E+ E+++ + G + + E+ +
Sbjct: 538 ESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEENDS 597
Query: 76 NSSKFELRKSP-VFSDEDSDLDFDISKLEQQS------KVQNTGHGKPREKSIIDEKFFQ 128
+S+FE S V +E S+ +FD E++ KV + + ++ DEK +
Sbjct: 598 ENSEFEDDGSEKVLDEEGSEREFDEDSDEKEEEEDTYEKVFDDESDEKEDEEYADEKGLE 657
Query: 129 LSEMEAYLENR-EKEEERKDDNDDES--GKSSRNVNNKDF---------FDPVESDEDIA 176
++ +A + EK E DD +DE GK + + K F FD E +
Sbjct: 658 AADKKAEEGDADEKLFEESDDKEDEDADGKEVEDADEKLFEDDDSNEKLFDEEEDSSEKL 717
Query: 177 SDHDDELGS 185
D DE G+
Sbjct: 718 FDDSDERGT 726
Score = 37.0 bits (84), Expect = 0.012
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 19/166 (11%)
Query: 26 ELGEESEEQECEEDGSETETGGQEDLEDLQE-------EEEVSDMGGDNPEVGKKARNSS 78
E +++ + +CEE+G E+ + E +E EE+ S+ D K++ + S
Sbjct: 502 ESKKKTLKNDCEENGLAKESEDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGS 561
Query: 79 KFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLEN 138
+ E ++ + + DLD + S+ E V + K E++ + F+ E L+
Sbjct: 562 EREFEENGL----EKDLDEEGSEKELHENVLD----KELEENDSENSEFEDDGSEKVLDE 613
Query: 139 REKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELG 184
E E +D+D++ + + K F D ESDE ++ DE G
Sbjct: 614 EGSEREFDEDSDEK--EEEEDTYEKVFDD--ESDEKEDEEYADEKG 655
Score = 32.0 bits (71), Expect = 0.40
Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 16/177 (9%)
Query: 30 ESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDN-------PEVGKKARNSSKFEL 82
+ ++ E EDG E E G E+ E+ ++ G P+ G + S K
Sbjct: 427 DEKKFEKTEDGGEFEEGASENNAKESSPEKEAEEGCPEKESEEGCPKRGFEGSCSQKESE 486
Query: 83 RKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKE 142
+PV E+ + K ++ + G K E + E SE E +
Sbjct: 487 EGNPVRGSEEDSPKKESKKKTLKNDCEENGLAKESEDDLNKE-----SEEEV----GPTK 537
Query: 143 EERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMKLLKKKQKKE 199
E +DD++ ES + ++D + + + D D+E ++ + + K+ +E
Sbjct: 538 ESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEKELHENVLDKELEE 594
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 44.7 bits (104), Expect = 6e-05
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 13/150 (8%)
Query: 29 EESEEQECEEDGSETE-TGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPV 87
EE +++E EED +E + G+ED ++ EE+ D G+ E G+ A+ + +
Sbjct: 126 EEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGN--EKGEDAKEKEDGKKGEDGK 183
Query: 88 FSDEDSDLDFDISKLEQQSKVQNTGHGKPRE--KSIIDEKFFQLSEMEAYLENREKEEER 145
+ ED + K E+ K TG GK E K D+K + +++ + +E+E+ +
Sbjct: 184 GNGEDGKEKGEDEKEEEDRK--ETGDGKENEDGKEKGDKK--EGKDVKVKEDEKEREDGK 239
Query: 146 KDD--NDDESGKSSRNVNNKDFFDPVESDE 173
+D+ N++E+GK ++ ++ + E DE
Sbjct: 240 EDEGGNEEEAGKEKEDLKEEE--EGKEEDE 267
Score = 39.7 bits (91), Expect = 0.002
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 24/182 (13%)
Query: 23 QIVELGEESEEQECEEDGSETETGGQE---DLEDLQEEEEVSDMGGDNPEVGKKARNSSK 79
+IVE+ EE+ E E+ G + E E + ED +E+EE D + E GK+ ++
Sbjct: 96 EIVEVKEENIEDATEKGGEKKEAVAAEVKNEEEDQKEDEE--DQNEEKGEAGKEDKDEKG 153
Query: 80 FELRKSPVFSDEDSDLDFDISKLEQQSKVQN-TGHGKPREKSIIDEKFFQLSEMEAYLEN 138
E K +E + D + E K ++ G+G+ ++ DEK
Sbjct: 154 EEDGKEDKNGNEKGE---DAKEKEDGKKGEDGKGNGEDGKEKGEDEK------------E 198
Query: 139 REKEEERKDDNDDESGKSSRN-VNNKDFFDPVESDEDIASDHDDELGSNKMMKLLKKKQK 197
E +E D ++E GK + KD V+ DE D ++ G N+ +K+
Sbjct: 199 EEDRKETGDGKENEDGKEKGDKKEGKDV--KVKEDEKEREDGKEDEGGNEEEAGKEKEDL 256
Query: 198 KE 199
KE
Sbjct: 257 KE 258
Score = 32.0 bits (71), Expect = 0.40
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 32 EEQECEEDGSETETGGQEDL----EDLQEEEEVSDMGGDNPEVGKKARNSS 78
E+++ EDG E E G +E+ EDL+EEEE + + GKK S
Sbjct: 230 EDEKEREDGKEDEGGNEEEAGKEKEDLKEEEEGKEEDEIKEDDGKKEEPQS 280
Score = 31.6 bits (70), Expect = 0.52
Identities = 35/174 (20%), Positives = 69/174 (39%), Gaps = 4/174 (2%)
Query: 27 LGEESEEQECEEDGSETETGGQEDLEDLQ-EEEEVSDMGGDNPEVGKKARNSSKFELRKS 85
+ E +E EED +E G+ + + E+E+ ++ +N E + K +
Sbjct: 63 VAETKQEAVVEEDYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEAVAAE 122
Query: 86 PVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEER 145
+ED D + E+ + K E D+ + E E+ +K E+
Sbjct: 123 VKNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGEDAKEKEDGKKGEDG 182
Query: 146 KDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMKLLKKKQKKE 199
K + +D K + K+ D E+ + ++ E G K K +K K+ ++
Sbjct: 183 KGNGEDGKEKGE---DEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEK 233
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 44.7 bits (104), Expect = 6e-05
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 25/142 (17%)
Query: 28 GEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPV 87
GEE EE+E EE+ E E G+E+ E+ +EEEE GG+ E+G++ + V
Sbjct: 405 GEEEEEEEEEEEEEEGE--GEEEEEEGEEEEE---EGGEGEELGEEEEVE-----EEGDV 454
Query: 88 FSDEDSDLDFDISK--LEQQSKVQNT--------GHGKPREKSIIDEKFFQ-----LSEM 132
SDE+ + D + S LE + Q +G E F + S+
Sbjct: 455 DSDEEEEEDEESSSEGLEAEDWAQGVVEAGGSFGAYGAQEEAQCPTLHFLEGGEDSDSDS 514
Query: 133 EAYLENREKEEERKDDNDDESG 154
E + E +E+ DD+D+E G
Sbjct: 515 EEEDDEEEDDEDEDDDDDEEDG 536
Score = 27.7 bits (60), Expect = 7.6
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 131 EMEAYLENREKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDE 182
E E E +EEE + + ++E G + + + VE + D+ SD ++E
Sbjct: 413 EEEEEEEGEGEEEEEEGEEEEEEGGEGEELGEE---EEVEEEGDVDSDEEEE 461
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 44.3 bits (103), Expect = 8e-05
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 22/162 (13%)
Query: 29 EESEEQECEEDGSETETGGQEDLEDLQEE-------EEVSDMGGDNPEVGKKARNSSKFE 81
++ + Q GSE ++ ED +D E +E M G + + S+ E
Sbjct: 110 QQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEE 169
Query: 82 LRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREK 141
KS S ++++ D++ + K QN K K I+ +K Q+ E E
Sbjct: 170 REKS---SCDETESDYEPKNKVKSRKPQNRSKSK-NGKKILGQKKRQIDSSE------ED 219
Query: 142 EEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDEL 183
++E DND S + VN + DE++ +D DD L
Sbjct: 220 DDEEDYDNDKRSSRRQATVNVS-----YKEDEEMKTDSDDLL 256
>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
Length = 740
Score = 43.5 bits (101), Expect = 1e-04
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 9/154 (5%)
Query: 26 ELGEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKS 85
E EE EE+E EE+ T++ +EDLE +QE +E D D E ++ K +
Sbjct: 442 ESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQE-DDEEEDEEEEAAAGKDGDKSPMSSL 500
Query: 86 PVFSDEDSDLDFDISKL--EQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEE 143
+ ++++ + IS+ EQQ+K G+ S++ E+ S ++A + EE
Sbjct: 501 QISNEKNLEPGKQISRSSGEQQNK------GRIVSPSLLSEEPLAPSSIDAESNGEQPEE 554
Query: 144 ERKDDNDDESGKSSRNVNNKDFFDPVESDEDIAS 177
++ S + P + DI+S
Sbjct: 555 LTLEEESPVSQLFELEIEALPLDTPSSVETDISS 588
>gi|215422388 death-domain associated protein isoform a [Homo
sapiens]
Length = 740
Score = 43.5 bits (101), Expect = 1e-04
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 9/154 (5%)
Query: 26 ELGEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKS 85
E EE EE+E EE+ T++ +EDLE +QE +E D D E ++ K +
Sbjct: 442 ESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQE-DDEEEDEEEEAAAGKDGDKSPMSSL 500
Query: 86 PVFSDEDSDLDFDISKL--EQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEE 143
+ ++++ + IS+ EQQ+K G+ S++ E+ S ++A + EE
Sbjct: 501 QISNEKNLEPGKQISRSSGEQQNK------GRIVSPSLLSEEPLAPSSIDAESNGEQPEE 554
Query: 144 ERKDDNDDESGKSSRNVNNKDFFDPVESDEDIAS 177
++ S + P + DI+S
Sbjct: 555 LTLEEESPVSQLFELEIEALPLDTPSSVETDISS 588
>gi|215422366 death-domain associated protein isoform b [Homo
sapiens]
Length = 752
Score = 43.5 bits (101), Expect = 1e-04
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 9/154 (5%)
Query: 26 ELGEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKS 85
E EE EE+E EE+ T++ +EDLE +QE +E D D E ++ K +
Sbjct: 454 ESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQE-DDEEEDEEEEAAAGKDGDKSPMSSL 512
Query: 86 PVFSDEDSDLDFDISKL--EQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEE 143
+ ++++ + IS+ EQQ+K G+ S++ E+ S ++A + EE
Sbjct: 513 QISNEKNLEPGKQISRSSGEQQNK------GRIVSPSLLSEEPLAPSSIDAESNGEQPEE 566
Query: 144 ERKDDNDDESGKSSRNVNNKDFFDPVESDEDIAS 177
++ S + P + DI+S
Sbjct: 567 LTLEEESPVSQLFELEIEALPLDTPSSVETDISS 600
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 43.1 bits (100), Expect = 2e-04
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
Query: 28 GEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPV 87
GEE EE+E EE+ + TE G Q EE D+ + G R+ E
Sbjct: 192 GEEEEEEEEEEEEASTEYGHQAHRHRGHGSEEDEDVSDGHHHHGPSHRHQG-HEEDDDDD 250
Query: 88 FSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKD 147
D+D D D D+S + ++ GHG ++ + D + + +R EE+ D
Sbjct: 251 DDDDDDDDDDDVSIEYRHQAHRHQGHGIEEDEDVSDGHHHR----DPSHRHRSHEEDDND 306
Query: 148 DND 150
D+D
Sbjct: 307 DDD 309
Score = 32.0 bits (71), Expect = 0.40
Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 14/157 (8%)
Query: 26 ELGEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKS 85
ELG ++ ET G + ++++ + D + K K E +
Sbjct: 433 ELGHQAPSHRQSHQDEETGHGQRGSIKEMSHHPPGHTVVKDRSHLRKDDSEEEK-EKEED 491
Query: 86 PVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEER 145
P +ED + EQ K T HG ++ DE+ E N+E+EEE
Sbjct: 492 PGSHEEDDESS------EQGEK--GTHHGSRDQEDEEDEE-----EGHGLSLNQEEEEEE 538
Query: 146 KDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDE 182
+ ++E R + P+ D + ++E
Sbjct: 539 DKEEEEEEEDEERREERAEVGAPLSPDHSEEEEEEEE 575
Score = 27.7 bits (60), Expect = 7.6
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 38/141 (26%)
Query: 39 DGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDFD 98
DG + E G+E+ E+ +EEEE S E G +A R S+ED D+
Sbjct: 186 DGEDDE--GEEEEEEEEEEEEAST------EYGHQAH-------RHRGHGSEEDEDVS-- 228
Query: 99 ISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKDDNDDESGKSSR 158
H P + E+ ++ + +++ DD+DD+ R
Sbjct: 229 ----------DGHHHHGPSHRHQGHEE-----------DDDDDDDDDDDDDDDDVSIEYR 267
Query: 159 NVNNKDFFDPVESDEDIASDH 179
+ ++ +E DED++ H
Sbjct: 268 HQAHRHQGHGIEEDEDVSDGH 288
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 43.1 bits (100), Expect = 2e-04
Identities = 54/200 (27%), Positives = 82/200 (41%), Gaps = 41/200 (20%)
Query: 32 EEQECEEDGSETETGGQE--------DLED-LQEEEEVSDMGGDN----PEVGKKA---- 74
++Q+ +ED E E G+ DLED L+ + SD G+ P+ KKA
Sbjct: 183 KDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKKAPLAK 242
Query: 75 --RNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSI----------I 122
R K + F D D D DF+ +++ S ++ +P K+ +
Sbjct: 243 GGRKKKKKKGSDDEAFEDSD-DGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEGPKGV 301
Query: 123 DEKFFQLSEMEAYL---ENREKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDH 179
DE+ E E E++E+EEE+K E K R +++ ESD SD
Sbjct: 302 DEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQE--KKRRKDSSE------ESDSSEESDI 353
Query: 180 DDELGSNKMMKLLKKKQKKE 199
D E S M K K+E
Sbjct: 354 DSEASSALFMAKKKTPPKRE 373
Score = 27.7 bits (60), Expect = 7.6
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 136 LENREKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELG--------SNK 187
++ R +++ +D++++E K R ++ +E D +++SD D G + K
Sbjct: 177 MQQRRLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKK 236
Query: 188 MMKLLK--KKQKKEAFLKCEYFETS 210
L K +K+KK+ E FE S
Sbjct: 237 KAPLAKGGRKKKKKKGSDDEAFEDS 261
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 43.1 bits (100), Expect = 2e-04
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 10/168 (5%)
Query: 39 DGSETETGGQEDLEDLQEEEEVSDMG--GDNPEVGKKARNSSKFELRKSP----VFSDED 92
DGSE + +++ + ++E ++ G GD + ++R K + P +ED
Sbjct: 162 DGSEED---EDNSKKIKERSRINSSGESGDESDEFLQSRKGQKKNQKNKPGPNIESGNED 218
Query: 93 SDLDFDISKLEQQSKVQNTGHGKPREKSIID-EKFFQLSEMEAYLENREKEEERKDDNDD 151
D F I + Q+ + K R++ K + E+E +++ K++E + ++
Sbjct: 219 DDASFKIKTVAQKKAEKKERERKKRDEEKAKLRKLKEKEELETGKKDQSKQKESQRKFEE 278
Query: 152 ESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMKLLKKKQKKE 199
E+ KS V+ E E + DD G K KKK +KE
Sbjct: 279 ETVKSKVTVDTGVIPASEEKAETPTAAEDDNEGDKKKKDKKKKKGEKE 326
Score = 37.0 bits (84), Expect = 0.012
Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 15/133 (11%)
Query: 29 EESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVF 88
EE+ E+ +TE G +D E + +EE + G N E++++P
Sbjct: 484 EETPPPVEPEEEEDTEDAGLDDWEAMASDEETEKVEG----------NKVHIEVKENPEE 533
Query: 89 SDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKD- 147
+E+ + + + + E++ + + G ++ DEK + L+ + +E D
Sbjct: 534 EEEEEEEEEEDEESEEEEEEEGESEGSEGDEE--DEKVSDEKDSGKTLDKKPSKEMSSDS 591
Query: 148 --DNDDESGKSSR 158
D+DD+ K R
Sbjct: 592 EYDSDDDRTKEER 604
Score = 34.7 bits (78), Expect = 0.062
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 20/150 (13%)
Query: 20 DPWQIVELGEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSK 79
D W+ + EE+E+ E + E + +E+ E+ +EEEE + + E G+ +
Sbjct: 504 DDWEAMASDEETEKVEGNKVHIEVKENPEEEEEEEEEEEEDEESEEEEEEEGESEGSEGD 563
Query: 80 FELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENR 139
E K V ++DS D ++ S R K E AY + +
Sbjct: 564 EEDEK--VSDEKDSGKTLDKKPSKEMSSDSEYDSDDDRTK-----------EERAYDKAK 610
Query: 140 EKEEERKDDNDDESGKSSRNVNNKDFFDPV 169
+ E+R+ ++ S+NVN + P+
Sbjct: 611 RRIEKRRLEH-------SKNVNTEKLRAPI 633
Score = 33.5 bits (75), Expect = 0.14
Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 27/186 (14%)
Query: 29 EESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVF 88
E +EE+ +D + G++ D + EE+ D K S K K ++
Sbjct: 85 ENNEEEFTSKDKKKKGQKGKKQSFDDNDSEELED----------KDSKSKKTAKPKVEMY 134
Query: 89 SDEDSDLDFDISKLEQQSKVQNT------------GHGKPREKSIIDEKFFQLSEMEAYL 136
S D D DF+ + + K Q + K +E+S I+ E + +L
Sbjct: 135 SGSDDDDDFNKLPKKAKGKAQKSNKKWDGSEEDEDNSKKIKERSRINSSGESGDESDEFL 194
Query: 137 ENR---EKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMKLLK 193
++R +K ++ K + ESG + + K V + + + + + KL K
Sbjct: 195 QSRKGQKKNQKNKPGPNIESGNEDDDASFK--IKTVAQKKAEKKERERKKRDEEKAKLRK 252
Query: 194 KKQKKE 199
K+K+E
Sbjct: 253 LKEKEE 258
Score = 32.0 bits (71), Expect = 0.40
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 140 EKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMKLLKKKQKKE 199
E+EEE +++ D+ES + + + E DE ++ + D K L KK KE
Sbjct: 534 EEEEEEEEEEDEESEEEEEEEGESEGSEGDEEDEKVSDEKDSG-------KTLDKKPSKE 586
Query: 200 AFLKCEY 206
EY
Sbjct: 587 MSSDSEY 593
Score = 30.4 bits (67), Expect = 1.2
Identities = 25/127 (19%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 38 EDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVFSDEDSDLDF 97
E+ +ET T ++D E +++++ G+ E K+ + K+ V + +++
Sbjct: 296 EEKAETPTAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPS----KATVKAMQEA---- 347
Query: 98 DISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKDDNDDESGKSS 157
++KL+++ + R+K +E+ +L E+EA + E+ E+ K + + K
Sbjct: 348 -LAKLKEEEE---------RQKREEEERIKRLEELEAKRKEEERLEQEKRERKKQKEKER 397
Query: 158 RNVNNKD 164
+ K+
Sbjct: 398 KERLKKE 404
>gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homolog
[Homo sapiens]
Length = 666
Score = 42.7 bits (99), Expect = 2e-04
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 32/152 (21%)
Query: 31 SEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVFSD 90
SE + E+ S+ E G+ED D ++E++ N + ++A+ S + +L+ S D
Sbjct: 130 SEAEGSEKAHSDDEKWGREDKSDQSDDEKIQ-----NSDDEERAQGSDEDKLQNS----D 180
Query: 91 EDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKDDND 150
+D K+QNT + + S D++ QLSE E N + E DND
Sbjct: 181 DDE-------------KMQNTDDEERPQLS--DDERQQLSEEEK--ANSDDERPVASDND 223
Query: 151 DESGKSSRNVNNKDFFDPVESDEDIASDHDDE 182
DE N+ D P SDE+ + DDE
Sbjct: 224 DEKQ------NSDDEEQPQLSDEEKMQNSDDE 249
Score = 40.0 bits (92), Expect = 0.001
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 30 ESEEQECEEDGSETET---GGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSP 86
E+ E+ ED ++ G E D ++E SD G + E A S K
Sbjct: 89 EASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHHSE----AEGSEK------- 137
Query: 87 VFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERK 146
SD++ D S K+QN+ + + S DE Q S+ + ++N + EE +
Sbjct: 138 AHSDDEKWGREDKSDQSDDEKIQNSDDEERAQGS--DEDKLQNSDDDEKMQNTDDEERPQ 195
Query: 147 DDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDE 182
+D+ S N D PV SD D + D+
Sbjct: 196 LSDDERQQLSEEEKANSDDERPVASDNDDEKQNSDD 231
>gi|61175239 transcription elongation factor A (SII)-like 5 [Homo
sapiens]
Length = 206
Score = 42.7 bits (99), Expect = 2e-04
Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 35/184 (19%)
Query: 28 GEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPV 87
G+ E+ E +G + G ED E +EEE DM G GK+
Sbjct: 10 GKPENERNLESEGKPEDEGSTED-EGKSDEEEKPDMEGKTECEGKR-------------- 54
Query: 88 FSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKD 147
ED D +LE + + G + +K + K +A E++ + E++
Sbjct: 55 ---EDEGEPGDEGQLEDEGNQEKQGKSEGEDKPQSEGK----PASQAKPESQPRAAEKRP 107
Query: 148 DNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMK----------LLKKKQK 197
D K+ R + P +S ED+ H L S +MM+ L+KKQK
Sbjct: 108 AEDYVPRKAKRKTDRGTDDSPKDSQEDLQERH---LSSEEMMRECGDVSRAQEELRKKQK 164
Query: 198 KEAF 201
F
Sbjct: 165 MGGF 168
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 42.0 bits (97), Expect = 4e-04
Identities = 35/170 (20%), Positives = 75/170 (44%), Gaps = 6/170 (3%)
Query: 26 ELGE-ESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRK 84
E GE E EE+E E +G + E G+E+ + + EEE + G+ E G+ + E +
Sbjct: 926 EEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGE--GEGEEEGEGEGEEGEGEGEE 983
Query: 85 SPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEE 144
+ + + + + E + + + G G+ E+ ++ ++ E E E+E E
Sbjct: 984 EEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEG---EVEGEEGEGEGEEEEGE 1040
Query: 145 RKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMKLLKK 194
+ + ++ G+ N N++ + E + ++E + K + K
Sbjct: 1041 EEGEEREKEGEGEENRRNREEEEEEEGKYQETGEEENERQDGEEYKKVSK 1090
Score = 40.4 bits (93), Expect = 0.001
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 10/167 (5%)
Query: 26 ELGEESEE-QECEEDGSETETGGQEDLEDLQEEEEVSDMG---GDNPEV---GKKARNSS 78
E G + E QE EE G E G+E+ D +EEEE G G+ EV +K
Sbjct: 716 EQGHQKERNQEMEEGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGER 775
Query: 79 KFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLEN 138
K E R E+ + + E + + + G E ++E + E E E
Sbjct: 776 KKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEG 835
Query: 139 REKE---EERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDE 182
E+E EE + + ++E G+ ++ E +E ++E
Sbjct: 836 EEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEE 882
Score = 37.7 bits (86), Expect = 0.007
Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 36/177 (20%)
Query: 27 LGEESEEQECEEDGS-ETETGGQEDLEDLQEEEEVSDMGG---DNPEVGKKARNSSKFEL 82
+GE + E DG+ E + G E +D + E+ D G + P G+K EL
Sbjct: 644 VGEAEDGPEGRGDGTCEEGSSGAEHWQDEEREKGEKDKGRGEMERPGEGEK-------EL 696
Query: 83 RKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKE 142
+ + D + EQ+ K + GH K R + + + + E E +RE+E
Sbjct: 697 AEKEEWKKRDGE--------EQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGDREEE 748
Query: 143 EERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMKLLKKKQKKE 199
EE++ + +E E++ + + E G K + K++K E
Sbjct: 749 EEKEGEGKEEG-----------------EGEEVEGEREKEEGERKKEERAGKEEKGE 788
Score = 36.6 bits (83), Expect = 0.016
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 25 VELGEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMG------GDNPEVGKKARNSS 78
VE G+ E+E EE E E G E+ E EEEE G G+ E G++
Sbjct: 819 VEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEG 878
Query: 79 KFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLEN 138
+ E + +E+ + + + + E + + + G G+ E E+ + E E E
Sbjct: 879 EEEEGEGE--GEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEE 936
Query: 139 REKE-EERKDDNDDESGK 155
E E E+ + + ++E G+
Sbjct: 937 GEGEGEDGEGEGEEEEGE 954
Score = 33.1 bits (74), Expect = 0.18
Identities = 40/195 (20%), Positives = 79/195 (40%), Gaps = 19/195 (9%)
Query: 28 GEESEEQECEEDGSETETGGQEDLEDLQ---EEEEVSDMGGDNPEVGKKARNSSKFELRK 84
GE EE E E + E E G+E+ E+ + EEEE G D G++ + E +
Sbjct: 902 GEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEE 961
Query: 85 SPVFSDEDSDLDFDISK------------LEQQSKVQNTGHGKPREKSIIDEKFFQLSEM 132
+E+ + + + + E++ + + G+ E+ + + + E+
Sbjct: 962 GEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEV 1021
Query: 133 EAYLENREKEEERKDDNDDESG----KSSRNVNNKDFFDPVESDEDIASDHDDELGSNKM 188
E +E E E E +++ +E G K N+ + E +E + +E +
Sbjct: 1022 EGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNREEEEEEEGKYQETGEEENERQD 1081
Query: 189 MKLLKKKQKKEAFLK 203
+ KK K + +K
Sbjct: 1082 GEEYKKVSKIKGSVK 1096
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 42.0 bits (97), Expect = 4e-04
Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 24/173 (13%)
Query: 29 EESEEQECEEDGSETETGGQEDLEDLQEEEE-VSDMGGDNPEVGKKARNSSKFELRKSPV 87
E + ++ + ++T T + ED+ ++E+ +D GG+ E K
Sbjct: 231 ERASKKLPSQPTTDTSTDKERTSEDMADKEKSTADSGGEGLETAPK-------------- 276
Query: 88 FSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKD 147
S+E SDL + +++ +K N I+ K Q E ++ +K E++ D
Sbjct: 277 -SEEFSDLPCPVEEIKNYTKEHNN--------LILLNKDVQQESSEQKNKSTDKGEKKPD 327
Query: 148 DNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMKLLKKKQKKEA 200
N+ K + + FD + ED D++ K ++ LK +K +
Sbjct: 328 SNEKGERKKEKKEKTEKKFDHSKKSEDTQKVKDEKQAKEKEVESLKLPSEKNS 380
Score = 35.4 bits (80), Expect = 0.036
Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 13/162 (8%)
Query: 31 SEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVFSD 90
S E +++ S +ET G++ ++ +++ + D P + K+ R + ++ +
Sbjct: 2833 SRVMEEKDEYSSSETTGEKPEQN--DDDTIKSQEEDQPIIIKRKRGRPRKYPVETTLKMK 2890
Query: 91 EDSDLDFDISKLEQQS-----KVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEER 145
+DS D I +EQ KV T +E + + E+ + E + + R
Sbjct: 2891 DDSKTDTGIVTVEQSPSSSKLKVMQTDESN-KETANLQERSISNDDGEEKIVTSVRRRGR 2949
Query: 146 KDD-----NDDESGKSSRNVNNKDFFDPVESDEDIASDHDDE 182
K +DD K DPVE ++ SD ++E
Sbjct: 2950 KPKRSLTVSDDAESSEPERKRQKSVSDPVEDKKEQESDEEEE 2991
>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
Length = 1184
Score = 42.0 bits (97), Expect = 4e-04
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 41/167 (24%)
Query: 29 EESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVF 88
+ S EC++ + G ED+++ +EE+E + DN E G + + + +
Sbjct: 83 DSSSVDECDD------SDGTEDMDE-KEEDEGEEYSEDNDEPGDEDEEDEEGDREEEEEI 135
Query: 89 SDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKDD 148
+ED D D D +E E E+EEE +++
Sbjct: 136 EEEDEDDDEDGEDVED--------------------------------EEEEEEEEEEEE 163
Query: 149 NDDESGKSSRNVNNKDFFDPVESDEDIASDHD--DELGSNKMMKLLK 193
++E+ N +N E D++ ++D DEL + ++ L K
Sbjct: 164 EEEENEDHQMNCHNTRIMQDTEKDDNNNDEYDNYDELVAKSLLNLGK 210
Score = 40.4 bits (93), Expect = 0.001
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 6/161 (3%)
Query: 26 ELGEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKS 85
E G+ EE+E EE+ + + G ED+ED +EEEE + + E N + +
Sbjct: 125 EEGDREEEEEIEEEDEDDDEDG-EDVEDEEEEEEEEEEEEEEEENEDHQMNCHNTRIMQD 183
Query: 86 PVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEER 145
D ++D + +L +S + GK E + + SEM + N +++
Sbjct: 184 TEKDDNNNDEYDNYDELVAKSLL---NLGKIAEDAAYRAR--TESEMNSNTSNSLEDDSD 238
Query: 146 KDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSN 186
K++N + S ++++ + V+S + +A H L N
Sbjct: 239 KNENLGRKSELSLDLDSDVVRETVDSLKLLAQGHGVVLSEN 279
Score = 37.7 bits (86), Expect = 0.007
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 15/168 (8%)
Query: 29 EESEEQECEEDGSETETGGQEDLED----LQEEEEVSDMGGDNPEVGKKARNSSKFELRK 84
+E EE E EE + + G ED ED +EEEE+ + D+ E G+ + + E +
Sbjct: 100 DEKEEDEGEEYSEDNDEPGDEDEEDEEGDREEEEEIEEEDEDDDEDGEDVEDEEEEEEEE 159
Query: 85 SPVFSD---EDSDLDFDISKLEQQS-KVQNTGHGKPREKSIIDEKFFQL---SEMEAYLE 137
+ ED ++ +++ Q + K N ++ + L +E AY
Sbjct: 160 EEEEEEEENEDHQMNCHNTRIMQDTEKDDNNNDEYDNYDELVAKSLLNLGKIAEDAAYRA 219
Query: 138 NREKEEERKDDN--DDESGKSSRNVNNKDFFDPVESDEDIASDHDDEL 183
E E N +D+S K + N+ K ++ D D+ + D L
Sbjct: 220 RTESEMNSNTSNSLEDDSDK-NENLGRKSELS-LDLDSDVVRETVDSL 265
Score = 33.1 bits (74), Expect = 0.18
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 90 DEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEE--RKD 147
D D D D K E + + + + +P ++ DE+ +RE+EEE +D
Sbjct: 92 DSDGTEDMD-EKEEDEGEEYSEDNDEPGDEDEEDEE-----------GDREEEEEIEEED 139
Query: 148 DNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMKLLKK 194
++DDE G+ + ++ + E +E+ DH + ++M+ +K
Sbjct: 140 EDDDEDGEDVEDEEEEEEEEEEEEEEEENEDHQMNCHNTRIMQDTEK 186
>gi|55741709 RNA binding motif protein 25 [Homo sapiens]
Length = 843
Score = 41.6 bits (96), Expect = 5e-04
Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 29 EESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVF 88
+E E QE E++ E E + + E + E E + + + ++ R + R
Sbjct: 298 KEKERQEIEKERRERERERERERERRERERE-REREREREKEKERERERERDRDRDRTKE 356
Query: 89 SDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKDD 148
D D D + D + ++S +N + REKS E+ RE+E ER+ +
Sbjct: 357 RDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRER------------ERERERERERE 404
Query: 149 NDDESGKSSRNVNNKDFFDPVESDEDIASDHDDELGSNKMMKLLKKKQKKEA 200
+ E + ++ E D+ + D+E + + KL +K ++KEA
Sbjct: 405 REREREREREREREREREREREKDKKRDREEDEE-DAYERRKLERKLREKEA 455
Score = 33.1 bits (74), Expect = 0.18
Identities = 39/199 (19%), Positives = 80/199 (40%), Gaps = 32/199 (16%)
Query: 29 EESEEQECEEDGSETETGGQEDLEDLQEE-----EEVSDMGGDNPEVGKKARNSSKFELR 83
E+ E+E E D T ++ D + + E SD D +K+R+ + R
Sbjct: 338 EKERERERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERER 397
Query: 84 KSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQ-------LSEMEAYL 136
+ + + + + + + ++ + + K R++ +E ++ L E EA
Sbjct: 398 EREREREREREREREREREREREREREREKDKKRDREEDEEDAYERRKLERKLREKEAAY 457
Query: 137 ENR---------------EKEEERKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDD 181
+ R EKE ER+++ E K ++ + K+F + + D D D
Sbjct: 458 QERLKNWEIRERKKTREYEKEAEREEERRREMAKEAKRL--KEFLEDYDDDRD---DPKY 512
Query: 182 ELGSNKMMKLLKKKQKKEA 200
GS +L ++++ EA
Sbjct: 513 YRGSALQKRLRDREKEMEA 531
Score = 30.8 bits (68), Expect = 0.89
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 68 PEVGKKARNSSKFELRKSPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFF 127
P + K+ N+ + E K + S E S KLE++ G + + I E+
Sbjct: 257 PLITKEDINAIEMEEDKRDLISREISKFRDTHKKLEEEK-----GKKEKERQEIEKERRE 311
Query: 128 QLSEMEAYLENREKEEERKDDNDDESGKSSRNVNNKD 164
+ E E E RE+E ER+ + + E K +D
Sbjct: 312 RERERERERERREREREREREREREKEKERERERERD 348
Score = 28.5 bits (62), Expect = 4.4
Identities = 29/153 (18%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 27 LGEESEEQECEEDGSETETGG--QEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRK 84
L E E+ + + D + G Q+ L D ++E E + + R + E +
Sbjct: 496 LKEFLEDYDDDRDDPKYYRGSALQKRLRDREKEMEADERD--------RKREKEELEEIR 547
Query: 85 SPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEE 144
+ ++ D D ++ ++EQ+++ + R+ I E E E E ++++EE
Sbjct: 548 QRLLAEGHPDPDAELQRMEQEAE-------RRRQPQIKQE-----PESEEEEEEKQEKEE 595
Query: 145 RKDDNDDESGKSSRNVNNKDFFDPVESDEDIAS 177
++++ +E + + K P+ S ++S
Sbjct: 596 KREEPMEEEEEPEQKPCLKPTLRPISSAPSVSS 628
>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
Length = 770
Score = 41.6 bits (96), Expect = 5e-04
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 28 GEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPV 87
G E EE+E EE+ E T + + E+ +EEEE + G ++ E A S E+ + +
Sbjct: 277 GSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEE----ASEQSAEEVSEEEM 332
Query: 88 FSDEDSDLD----------FDISKLEQQSKVQNTGHGKPREKSIID 123
DE+ + + FD E + + G G P+ ++ +
Sbjct: 333 SEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTE 378
Score = 35.0 bits (79), Expect = 0.047
Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 10/158 (6%)
Query: 29 EESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNP----EVGKKARNSSKFELRK 84
E +E+E + S +ED D + S P E+G + + ++ +
Sbjct: 188 ERRKEREARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELGDGRKPVKEEKMEE 247
Query: 85 SPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEE 144
+ SD D + +S +G G E+ +E+ E + E E+EEE
Sbjct: 248 RDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEE----EEEGSTSEESEEEEE 303
Query: 145 RKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDE 182
+++ ++E+G +S + + + S+E+++ D + E
Sbjct: 304 EEEEEEEETGSNSEEASEQSAEE--VSEEEMSEDEERE 339
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 30 ESEEQECEEDGSETETG-GQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVF 88
+SE + + S E+G G E+ E+ +EEEE + E ++ + E +
Sbjct: 259 DSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEE 318
Query: 89 SDEDSDLDFDISKLEQQSKVQNTGH 113
+ E S + ++ + + +N H
Sbjct: 319 ASEQSAEEVSEEEMSEDEERENENH 343
>gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]
Length = 780
Score = 41.6 bits (96), Expect = 5e-04
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 28 GEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPV 87
G E EE+E EE+ E T + + E+ +EEEE + G ++ E A S E+ + +
Sbjct: 287 GSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEE----ASEQSAEEVSEEEM 342
Query: 88 FSDEDSDLD----------FDISKLEQQSKVQNTGHGKPREKSIID 123
DE+ + + FD E + + G G P+ ++ +
Sbjct: 343 SEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTE 388
Score = 35.0 bits (79), Expect = 0.047
Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 10/158 (6%)
Query: 29 EESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNP----EVGKKARNSSKFELRK 84
E +E+E + S +ED D + S P E+G + + ++ +
Sbjct: 198 ERRKEREARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELGDGRKPVKEEKMEE 257
Query: 85 SPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEE 144
+ SD D + +S +G G E+ +E+ E + E E+EEE
Sbjct: 258 RDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEE----EEEGSTSEESEEEEE 313
Query: 145 RKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDE 182
+++ ++E+G +S + + + S+E+++ D + E
Sbjct: 314 EEEEEEEETGSNSEEASEQSAEE--VSEEEMSEDEERE 349
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 30 ESEEQECEEDGSETETG-GQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVF 88
+SE + + S E+G G E+ E+ +EEEE + E ++ + E +
Sbjct: 269 DSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEE 328
Query: 89 SDEDSDLDFDISKLEQQSKVQNTGH 113
+ E S + ++ + + +N H
Sbjct: 329 ASEQSAEEVSEEEMSEDEERENENH 353
>gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isoform
9 [Homo sapiens]
Length = 771
Score = 41.6 bits (96), Expect = 5e-04
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 28 GEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPV 87
G E EE+E EE+ E T + + E+ +EEEE + G ++ E A S E+ + +
Sbjct: 278 GSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEE----ASEQSAEEVSEEEM 333
Query: 88 FSDEDSDLD----------FDISKLEQQSKVQNTGHGKPREKSIID 123
DE+ + + FD E + + G G P+ ++ +
Sbjct: 334 SEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTE 379
Score = 35.0 bits (79), Expect = 0.047
Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 10/158 (6%)
Query: 29 EESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNP----EVGKKARNSSKFELRK 84
E +E+E + S +ED D + S P E+G + + ++ +
Sbjct: 189 ERRKEREARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELGDGRKPVKEEKMEE 248
Query: 85 SPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEE 144
+ SD D + +S +G G E+ +E+ E + E E+EEE
Sbjct: 249 RDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEE----EEEGSTSEESEEEEE 304
Query: 145 RKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDE 182
+++ ++E+G +S + + + S+E+++ D + E
Sbjct: 305 EEEEEEEETGSNSEEASEQSAEE--VSEEEMSEDEERE 340
Score = 29.6 bits (65), Expect = 2.0
Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
Query: 30 ESEEQECEEDGSETETG-GQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVF 88
+SE + + S E+G G E+ E+ +EEEE + E ++ + E +
Sbjct: 260 DSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEE 319
Query: 89 SDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKDD 148
+ E S + ++ + + +N H ++ E F E+ E EEE +
Sbjct: 320 ASEQSAEEVSEEEMSEDEERENENH-----LLVVPESRFDRDSG----ESEEAEEEVGEG 370
Query: 149 NDDESGKSSRN-VNNKDFFDPVESDEDI 175
S + + V + P+E +++
Sbjct: 371 TPQSSALTEGDYVPDSPALSPIELKQEL 398
>gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isoform
8 [Homo sapiens]
Length = 780
Score = 41.6 bits (96), Expect = 5e-04
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 28 GEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPV 87
G E EE+E EE+ E T + + E+ +EEEE + G ++ E A S E+ + +
Sbjct: 287 GSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEE----ASEQSAEEVSEEEM 342
Query: 88 FSDEDSDLD----------FDISKLEQQSKVQNTGHGKPREKSIID 123
DE+ + + FD E + + G G P+ ++ +
Sbjct: 343 SEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTE 388
Score = 35.0 bits (79), Expect = 0.047
Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 10/158 (6%)
Query: 29 EESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNP----EVGKKARNSSKFELRK 84
E +E+E + S +ED D + S P E+G + + ++ +
Sbjct: 198 ERRKEREARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELGDGRKPVKEEKMEE 257
Query: 85 SPVFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEE 144
+ SD D + +S +G G E+ +E+ E + E E+EEE
Sbjct: 258 RDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEE----EEEGSTSEESEEEEE 313
Query: 145 RKDDNDDESGKSSRNVNNKDFFDPVESDEDIASDHDDE 182
+++ ++E+G +S + + + S+E+++ D + E
Sbjct: 314 EEEEEEEETGSNSEEASEQSAEE--VSEEEMSEDEERE 349
Score = 29.6 bits (65), Expect = 2.0
Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
Query: 30 ESEEQECEEDGSETETG-GQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSPVF 88
+SE + + S E+G G E+ E+ +EEEE + E ++ + E +
Sbjct: 269 DSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEE 328
Query: 89 SDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIIDEKFFQLSEMEAYLENREKEEERKDD 148
+ E S + ++ + + +N H ++ E F E+ E EEE +
Sbjct: 329 ASEQSAEEVSEEEMSEDEERENENH-----LLVVPESRFDRDSG----ESEEAEEEVGEG 379
Query: 149 NDDESGKSSRN-VNNKDFFDPVESDEDI 175
S + + V + P+E +++
Sbjct: 380 TPQSSALTEGDYVPDSPALSPIELKQEL 407
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.128 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,983,198
Number of Sequences: 37866
Number of extensions: 464180
Number of successful extensions: 6903
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 404
Number of HSP's that attempted gapping in prelim test: 3083
Number of HSP's gapped (non-prelim): 2578
length of query: 213
length of database: 18,247,518
effective HSP length: 98
effective length of query: 115
effective length of database: 14,536,650
effective search space: 1671714750
effective search space used: 1671714750
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.