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Search of human proteins with 169208826
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169208826 PREDICTED: hypothetical protein [Homo sapiens]
(239 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169208826 PREDICTED: hypothetical protein [Homo sapiens] 484 e-137
gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo ... 49 4e-06
gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo sapi... 49 5e-06
gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo sapi... 49 5e-06
gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo sapi... 49 5e-06
gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo sapi... 49 5e-06
gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo sapi... 48 9e-06
gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens] 47 1e-05
gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens] 47 1e-05
gi|194272172 double homeobox, 4 [Homo sapiens] 47 1e-05
gi|194272217 double homeobox, 4-like [Homo sapiens] 47 1e-05
gi|194272216 double homeobox, 4-like [Homo sapiens] 47 1e-05
gi|194272215 double homeobox, 4-like [Homo sapiens] 47 1e-05
gi|194272192 double homeobox, 4-like [Homo sapiens] 47 1e-05
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 41 8e-04
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 41 8e-04
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ... 40 0.002
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 40 0.002
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 40 0.002
gi|239742065 PREDICTED: hypothetical protein XP_002342402 [Homo ... 40 0.002
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 39 0.003
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 39 0.005
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 39 0.005
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 39 0.005
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 38 0.007
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 38 0.007
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 38 0.007
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 38 0.007
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 38 0.007
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 38 0.009
>gi|169208826 PREDICTED: hypothetical protein [Homo sapiens]
Length = 239
Score = 484 bits (1247), Expect = e-137
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MRLGVLRWGGSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRGRGRMRSLAFT 60
MRLGVLRWGGSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRGRGRMRSLAFT
Sbjct: 1 MRLGVLRWGGSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRGRGRMRSLAFT 60
Query: 61 GFTRETRPLQLPSQQGRDVLRASVCSPGPGTFGALSRPTSGFQPRSRPRERPARTHLFLP 120
GFTRETRPLQLPSQQGRDVLRASVCSPGPGTFGALSRPTSGFQPRSRPRERPARTHLFLP
Sbjct: 61 GFTRETRPLQLPSQQGRDVLRASVCSPGPGTFGALSRPTSGFQPRSRPRERPARTHLFLP 120
Query: 121 SLPRARCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRR 180
SLPRARCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRR
Sbjct: 121 SLPRARCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRR 180
Query: 181 YSASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAPWPVTPPSSLQ 239
YSASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAPWPVTPPSSLQ
Sbjct: 181 YSASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAPWPVTPPSSLQ 239
>gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo
sapiens]
Length = 483
Score = 48.9 bits (115), Expect = 4e-06
Identities = 68/221 (30%), Positives = 90/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + LR LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKLRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCNAAPGGGHPAP 236
>gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 48.5 bits (114), Expect = 5e-06
Identities = 68/221 (30%), Positives = 90/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + LR LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKLRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP 236
>gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 48.5 bits (114), Expect = 5e-06
Identities = 68/221 (30%), Positives = 90/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + LR LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKLRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP 236
>gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 48.5 bits (114), Expect = 5e-06
Identities = 68/221 (30%), Positives = 90/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + LR LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKLRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP 236
>gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 48.5 bits (114), Expect = 5e-06
Identities = 68/221 (30%), Positives = 90/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + LR LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKLRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP 236
>gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 47.8 bits (112), Expect = 9e-06
Identities = 68/221 (30%), Positives = 90/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + LR LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKLRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGFQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP 236
>gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 47.0 bits (110), Expect = 1e-05
Identities = 67/221 (30%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + R LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKFRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP 236
>gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 483
Score = 47.0 bits (110), Expect = 1e-05
Identities = 67/221 (30%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + R LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKFRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP 236
>gi|194272172 double homeobox, 4 [Homo sapiens]
Length = 485
Score = 47.0 bits (110), Expect = 1e-05
Identities = 67/221 (30%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + R LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKFRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP 236
>gi|194272217 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 47.0 bits (110), Expect = 1e-05
Identities = 67/221 (30%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + R LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKFRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP 236
>gi|194272216 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 47.0 bits (110), Expect = 1e-05
Identities = 67/221 (30%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + R LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKFRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP 236
>gi|194272215 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 47.0 bits (110), Expect = 1e-05
Identities = 67/221 (30%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + R LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKFRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP 236
>gi|194272192 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 47.0 bits (110), Expect = 1e-05
Identities = 67/221 (30%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 26 PRGFLALRSPLTA----APGRASR-AQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVL 80
PR + R LTA P ++ A+ RGRGR R L +T PSQ + L
Sbjct: 49 PRPSVKFRPGLTAMALPTPSDSTLPAEARGRGRRRRLVWT-----------PSQS--EAL 95
Query: 81 RASVCS---PGPGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAF 132
RA PG T L++ +PR R R R H RRE+
Sbjct: 96 RACFERNPYPGIATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESR 144
Query: 133 PGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLIS 188
P P R+GP G R++V Q A LRAF R P +A +GL
Sbjct: 145 PWPG--------RRGPPEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPE 196
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
SR + + ++ A+ PG+ R + GG A G PAP
Sbjct: 197 SR-IQIWFQNRRARHPGQGGRAPAQAGGLCSAAPGGGHPAP 236
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 41.2 bits (95), Expect = 8e-04
Identities = 54/183 (29%), Positives = 68/183 (37%), Gaps = 30/183 (16%)
Query: 14 PPLPDGAFGGRDPRGFLALRSPLTAAPG---------RASRAQRRGRGRMRSLAFTGFTR 64
PP G P+ FLA RSP A+PG R +R RG GR R +
Sbjct: 101 PPFAPGRISPPAPQAFLAQRSPARASPGGGFTSAEGKRKTRPAGRGGGRTRRVV------ 154
Query: 65 ETRPLQLPSQQGRDVLRASVCSPGPGTFGALSRPTSGFQPRSRPRERPA-RTHLFLPSLP 123
P + GR SP P G+ S T PR+R R A + P P
Sbjct: 155 -AAPESAAAAPGR--------SPSPADPGSTSSATR--VPRARRSSRRALQPRHAAPDAP 203
Query: 124 RA--RCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRRY 181
A R +A P P+ PR +R G R L + AA AF + + R
Sbjct: 204 GAPSRSTSQATPPPA-PRFPASRRPGAPRLLSRTRQRELGGSAAPSVAFSGDVTLSLERG 262
Query: 182 SAS 184
AS
Sbjct: 263 PAS 265
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 41.2 bits (95), Expect = 8e-04
Identities = 54/183 (29%), Positives = 68/183 (37%), Gaps = 30/183 (16%)
Query: 14 PPLPDGAFGGRDPRGFLALRSPLTAAPG---------RASRAQRRGRGRMRSLAFTGFTR 64
PP G P+ FLA RSP A+PG R +R RG GR R +
Sbjct: 101 PPFAPGRISPPAPQAFLAQRSPARASPGGGFTSAEGKRKTRPAGRGGGRTRRVV------ 154
Query: 65 ETRPLQLPSQQGRDVLRASVCSPGPGTFGALSRPTSGFQPRSRPRERPA-RTHLFLPSLP 123
P + GR SP P G+ S T PR+R R A + P P
Sbjct: 155 -AAPESAAAAPGR--------SPSPADPGSTSSATR--VPRARRSSRRALQPRHAAPDAP 203
Query: 124 RA--RCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRRY 181
A R +A P P+ PR +R G R L + AA AF + + R
Sbjct: 204 GAPSRSTSQATPPPA-PRFPASRRPGAPRLLSRTRQRELGGSAAPSVAFSGDVTLSLERG 262
Query: 182 SAS 184
AS
Sbjct: 263 PAS 265
>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
Length = 536
Score = 40.0 bits (92), Expect = 0.002
Identities = 66/226 (29%), Positives = 85/226 (37%), Gaps = 30/226 (13%)
Query: 34 SPLTAAPGRASRAQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVLRASVCSPGPGTFG 93
+P PGRA G R +R+ RPL+ PS++ R RA C+P
Sbjct: 69 APPPTDPGRAGLRSWGAAGSARGSEGRPSSRQARPLRRPSRRAR--RRAPRCAP------ 120
Query: 94 ALSRPTSGFQPRSRPR-----ERPARTHLFLPSL---PRARCRREAFPGPSDPR--AGEV 143
R PR RPR RP R + L L R R + F G P G +
Sbjct: 121 --DRRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRL 178
Query: 144 K-RQGPGRGL--GSRSSVRVRQVAAALRAFRTPLAVCTRRYSASGLISSRGVPLRAGSQ- 199
+ R+ G GL G + ++ A A PL L RG +A Q
Sbjct: 179 EPRRWRGHGLQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCCRGGRAQAAGQP 238
Query: 200 -GAQPPGRSRRLRGEDGGA-ARTAADRGSPAPWPVTP----PSSLQ 239
G PGR R E G A A+ S AP P P P++LQ
Sbjct: 239 RGLCLPGRGRDRAVEAGDAVAQVRVQSHSFAPRPRAPLAVAPAALQ 284
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 39.7 bits (91), Expect = 0.002
Identities = 67/248 (27%), Positives = 82/248 (33%), Gaps = 40/248 (16%)
Query: 10 GSRGPPLPDGAFGGRDPRG---------FLALRSPL--------TAAPGRASRAQRRG-R 51
G RGPP P GA G P+G F + P APG A +RG R
Sbjct: 435 GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR 494
Query: 52 GRMRSLAFTGFTRETRPLQLPSQQGRDVLRASVCSPGPGTFGALSRPTSGFQPRSRPRER 111
G + G E G+D L +PG L+ P RP E
Sbjct: 495 GEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE- 553
Query: 112 PARTHLFLPSLPRARCRREAFPGPSDPRA--------GEVKRQGPGRGLGSRSSVRVRQV 163
P LP AR PG + P+ GE R GP G+R V
Sbjct: 554 --------PGLPGAR-GLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGF 604
Query: 164 AAALRAFRTPLAVCTRRYSASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDG--GAARTA 221
A P + G RG+P + G GA P GE G GA +
Sbjct: 605 PGPKGANGEPGKAGEK--GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS 662
Query: 222 ADRGSPAP 229
+G P P
Sbjct: 663 GFQGLPGP 670
Score = 34.7 bits (78), Expect = 0.075
Identities = 64/243 (26%), Positives = 79/243 (32%), Gaps = 38/243 (15%)
Query: 10 GSRGPPLPDGAFGGRD---------PRGFLALRSPLTAAPGRASRAQRRG-RGRMRSLAF 59
G+ GPP P G G R RGF L P + PG+ G RG +
Sbjct: 966 GAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGP-SGEPGKQGAPGASGDRGPPGPVGP 1024
Query: 60 TGFT-------RETRPLQLPSQQGRDVLRASVCSPGPGTFGALSRPTSGFQPRSRPRERP 112
G T RE P GRD A+ G GA+ P + P S P
Sbjct: 1025 PGLTGPAGEPGREGSP-GADGPPGRD--GAAGVKGDRGETGAVGAPGAPGPPGSPGPAGP 1081
Query: 113 ARTHLFLPSLPRARCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRT 172
R + GPS P AG QGP G + L+ R
Sbjct: 1082 TGKQG-----DRGEAGAQGPMGPSGP-AGARGIQGPQGPRGDKGEAG-EPGERGLKGHR- 1133
Query: 173 PLAVCTRRYSASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAPWPV 232
+GL G P +G QGA P RG G + D + P P+
Sbjct: 1134 ---------GFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPI 1184
Query: 233 TPP 235
PP
Sbjct: 1185 GPP 1187
Score = 34.3 bits (77), Expect = 0.098
Identities = 66/224 (29%), Positives = 73/224 (32%), Gaps = 26/224 (11%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRG-RGRMRSLAFTGFTRETRP 68
G G P GA G R P G LA PGR G RG G + P
Sbjct: 519 GQDGLAGPKGAPGERGPSG-LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGP 577
Query: 69 LQLPSQQGRDVLRASVCSPGP-GTFGALSRP-TSGFQ-PRSRPRERPARTHLFLPSLPRA 125
P + GR PGP G GA +P GF P+ E LP P
Sbjct: 578 SGAPGEDGR---------PGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL 628
Query: 126 RCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRRYSASG 185
R PG D G GP G R Q A F+ L G
Sbjct: 629 R----GLPG-KDGETGAAGPPGPAGPAGERGE----QGAPGPSGFQG-LPGPPGPPGEGG 678
Query: 186 LISSRGVPLRAGSQGAQPPGRSRRLRGEDG--GAARTAADRGSP 227
+GVP AG+ G P R GE G GA RG P
Sbjct: 679 KPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP 722
Score = 33.9 bits (76), Expect = 0.13
Identities = 67/237 (28%), Positives = 79/237 (33%), Gaps = 71/237 (29%)
Query: 2 RLGVLRWGGSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRGRGRMRSLAFTG 61
R+G G+ GPP P G G P+G P PGRA +G
Sbjct: 904 RVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP----PGRAGEPGLQG----------- 948
Query: 62 FTRETRPLQLPSQQGRDVLRASVCSPG-PGTFGALSRPTSGFQPRSRPRERPARTHLFLP 120
P P ++G PG G GA P P+ +R +
Sbjct: 949 ------PAGPPGEKG---------EPGDDGPSGAEGPP----GPQGLAGQRG------IV 983
Query: 121 SLPRARCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRR 180
LP R R FPG P +GE +QG G R P V
Sbjct: 984 GLPGQRGER-GFPGLPGP-SGEPGKQGAPGASGDRG---------------PPGPV---- 1022
Query: 181 YSASGLISSRGVPLRAGSQGAQ-PPGRS-----RRLRGEDG--GAARTAADRGSPAP 229
GL G P R GS GA PPGR + RGE G GA GSP P
Sbjct: 1023 -GPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGP 1078
Score = 29.6 bits (65), Expect = 2.4
Identities = 62/257 (24%), Positives = 82/257 (31%), Gaps = 48/257 (18%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRGRGRMRSLAFTGFTRETRPL 69
G GP P G G +G + P +A R + +R G F G
Sbjct: 786 GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP 845
Query: 70 QLPSQQGRDVLRASVCSPGP-------------------GTFGALSRPTSGFQPRSRPRE 110
+QG + +PGP G GA P + P + R
Sbjct: 846 GAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Query: 111 RPARTHLFL----PSLPRARCRREAFPGPSDP--RAGEVKRQGPGRGLGSRSSVRVRQVA 164
P ++ P P + + G S P RAGE QGP G + +
Sbjct: 906 GPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPS 965
Query: 165 AALRAFRTPLAVCTRRYSASGLISSRGVPLRAGSQGAQP----PGRSRRLRGEDG--GAA 218
A GL RG+ G +G + PG S GE G GA
Sbjct: 966 GA-----------EGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPS----GEPGKQGAP 1010
Query: 219 RTAADRGSPAPWPVTPP 235
+ DRG P PV PP
Sbjct: 1011 GASGDRGPPG--PVGPP 1025
Score = 27.7 bits (60), Expect = 9.2
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRGRGRMRSLAFTGFTRETRPL 69
G+ GP P GA G +G R A + R +G + G T P+
Sbjct: 732 GASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPI 791
Query: 70 QLPSQQGRDVLRASVCSPGP-GTFGALSRP 98
P G + + V PGP G+ GA P
Sbjct: 792 GPPGPAGANGEKGEVGPPGPAGSAGARGAP 821
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 39.7 bits (91), Expect = 0.002
Identities = 67/248 (27%), Positives = 82/248 (33%), Gaps = 40/248 (16%)
Query: 10 GSRGPPLPDGAFGGRDPRG---------FLALRSPL--------TAAPGRASRAQRRG-R 51
G RGPP P GA G P+G F + P APG A +RG R
Sbjct: 366 GPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGAR 425
Query: 52 GRMRSLAFTGFTRETRPLQLPSQQGRDVLRASVCSPGPGTFGALSRPTSGFQPRSRPRER 111
G + G E G+D L +PG L+ P RP E
Sbjct: 426 GEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGE- 484
Query: 112 PARTHLFLPSLPRARCRREAFPGPSDPRA--------GEVKRQGPGRGLGSRSSVRVRQV 163
P LP AR PG + P+ GE R GP G+R V
Sbjct: 485 --------PGLPGAR-GLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGF 535
Query: 164 AAALRAFRTPLAVCTRRYSASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDG--GAARTA 221
A P + G RG+P + G GA P GE G GA +
Sbjct: 536 PGPKGANGEPGKAGEK--GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPS 593
Query: 222 ADRGSPAP 229
+G P P
Sbjct: 594 GFQGLPGP 601
Score = 34.7 bits (78), Expect = 0.075
Identities = 64/243 (26%), Positives = 79/243 (32%), Gaps = 38/243 (15%)
Query: 10 GSRGPPLPDGAFGGRD---------PRGFLALRSPLTAAPGRASRAQRRG-RGRMRSLAF 59
G+ GPP P G G R RGF L P + PG+ G RG +
Sbjct: 897 GAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGP-SGEPGKQGAPGASGDRGPPGPVGP 955
Query: 60 TGFT-------RETRPLQLPSQQGRDVLRASVCSPGPGTFGALSRPTSGFQPRSRPRERP 112
G T RE P GRD A+ G GA+ P + P S P
Sbjct: 956 PGLTGPAGEPGREGSP-GADGPPGRD--GAAGVKGDRGETGAVGAPGAPGPPGSPGPAGP 1012
Query: 113 ARTHLFLPSLPRARCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRT 172
R + GPS P AG QGP G + L+ R
Sbjct: 1013 TGKQG-----DRGEAGAQGPMGPSGP-AGARGIQGPQGPRGDKGEAG-EPGERGLKGHR- 1064
Query: 173 PLAVCTRRYSASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAPWPV 232
+GL G P +G QGA P RG G + D + P P+
Sbjct: 1065 ---------GFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPI 1115
Query: 233 TPP 235
PP
Sbjct: 1116 GPP 1118
Score = 34.3 bits (77), Expect = 0.098
Identities = 66/224 (29%), Positives = 73/224 (32%), Gaps = 26/224 (11%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRG-RGRMRSLAFTGFTRETRP 68
G G P GA G R P G LA PGR G RG G + P
Sbjct: 450 GQDGLAGPKGAPGERGPSG-LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGP 508
Query: 69 LQLPSQQGRDVLRASVCSPGP-GTFGALSRP-TSGFQ-PRSRPRERPARTHLFLPSLPRA 125
P + GR PGP G GA +P GF P+ E LP P
Sbjct: 509 SGAPGEDGR---------PGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGL 559
Query: 126 RCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRRYSASG 185
R PG D G GP G R Q A F+ L G
Sbjct: 560 R----GLPG-KDGETGAAGPPGPAGPAGERGE----QGAPGPSGFQG-LPGPPGPPGEGG 609
Query: 186 LISSRGVPLRAGSQGAQPPGRSRRLRGEDG--GAARTAADRGSP 227
+GVP AG+ G P R GE G GA RG P
Sbjct: 610 KPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP 653
Score = 33.9 bits (76), Expect = 0.13
Identities = 67/237 (28%), Positives = 79/237 (33%), Gaps = 71/237 (29%)
Query: 2 RLGVLRWGGSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRGRGRMRSLAFTG 61
R+G G+ GPP P G G P+G P PGRA +G
Sbjct: 835 RVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP----PGRAGEPGLQG----------- 879
Query: 62 FTRETRPLQLPSQQGRDVLRASVCSPG-PGTFGALSRPTSGFQPRSRPRERPARTHLFLP 120
P P ++G PG G GA P P+ +R +
Sbjct: 880 ------PAGPPGEKG---------EPGDDGPSGAEGPP----GPQGLAGQRG------IV 914
Query: 121 SLPRARCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRR 180
LP R R FPG P +GE +QG G R P V
Sbjct: 915 GLPGQRGER-GFPGLPGP-SGEPGKQGAPGASGDRG---------------PPGPV---- 953
Query: 181 YSASGLISSRGVPLRAGSQGAQ-PPGRS-----RRLRGEDG--GAARTAADRGSPAP 229
GL G P R GS GA PPGR + RGE G GA GSP P
Sbjct: 954 -GPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGP 1009
Score = 29.6 bits (65), Expect = 2.4
Identities = 62/257 (24%), Positives = 82/257 (31%), Gaps = 48/257 (18%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRGRGRMRSLAFTGFTRETRPL 69
G GP P G G +G + P +A R + +R G F G
Sbjct: 717 GLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP 776
Query: 70 QLPSQQGRDVLRASVCSPGP-------------------GTFGALSRPTSGFQPRSRPRE 110
+QG + +PGP G GA P + P + R
Sbjct: 777 GAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 836
Query: 111 RPARTHLFL----PSLPRARCRREAFPGPSDP--RAGEVKRQGPGRGLGSRSSVRVRQVA 164
P ++ P P + + G S P RAGE QGP G + +
Sbjct: 837 GPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPS 896
Query: 165 AALRAFRTPLAVCTRRYSASGLISSRGVPLRAGSQGAQP----PGRSRRLRGEDG--GAA 218
A GL RG+ G +G + PG S GE G GA
Sbjct: 897 GA-----------EGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPS----GEPGKQGAP 941
Query: 219 RTAADRGSPAPWPVTPP 235
+ DRG P PV PP
Sbjct: 942 GASGDRGPPG--PVGPP 956
Score = 27.7 bits (60), Expect = 9.2
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRGRGRMRSLAFTGFTRETRPL 69
G+ GP P GA G +G R A + R +G + G T P+
Sbjct: 663 GASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPI 722
Query: 70 QLPSQQGRDVLRASVCSPGP-GTFGALSRP 98
P G + + V PGP G+ GA P
Sbjct: 723 GPPGPAGANGEKGEVGPPGPAGSAGARGAP 752
>gi|239742065 PREDICTED: hypothetical protein XP_002342402 [Homo
sapiens]
Length = 381
Score = 39.7 bits (91), Expect = 0.002
Identities = 62/210 (29%), Positives = 81/210 (38%), Gaps = 55/210 (26%)
Query: 32 LRSPLTAAPGRASRAQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVLRASVCS---PG 88
+ SPLT+ RGRGR R L +T PSQ +VLRA PG
Sbjct: 147 IHSPLTS----------RGRGRRRRLVWT-----------PSQS--EVLRACFERNPYPG 183
Query: 89 PGTFGALSRPTSGFQPR-----SRPRERPARTHLFLPSLPRARCRREAFPGPSDPRAGEV 143
T L++ +PR R R R H RRE+ P P
Sbjct: 184 IATRERLAQAIGIPEPRVQIWFQNERSRQLRQH-----------RRESRPWPG------- 225
Query: 144 KRQGPGRGLGSRSSVRVRQVAAALRAF---RTP-LAVCTRRYSASGLISSRGVPLRAGSQ 199
R+G G R++V Q A LRAF R P +A +GL SR + + ++
Sbjct: 226 -RRGLQEGRRKRTAVTGSQTALLLRAFEKDRFPGIAAREELARETGLPESR-IQIWFQNR 283
Query: 200 GAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
A+ PG+ R GG A PAP
Sbjct: 284 RARHPGQGGRAPAHAGGLCNAAPSGCHPAP 313
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 39.3 bits (90), Expect = 0.003
Identities = 67/249 (26%), Positives = 81/249 (32%), Gaps = 74/249 (29%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGR-ASRAQRRGRGRMRSLAFTGFTRETRP 68
G+RGPP P GA G RG PG+ ++ + RG G
Sbjct: 411 GARGPPGPAGANGAPGLRGG-------AGEPGKNGAKGEPGPRGERGEAGIPG------- 456
Query: 69 LQLPSQQGRDVLRASVCSPG----PGTFGALSRPTSGFQPRSRPRERPARTHLFLPSLPR 124
+P +G D S PG PG G P GF+ + P P +
Sbjct: 457 --VPGAKGEDGKDGSPGEPGANGLPGAAGERGAP--GFRGPAGPNGIPGE---------K 503
Query: 125 ARCRREAFPGPSDPR--AGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRRYS 182
PGP+ PR AGE R G G G R
Sbjct: 504 GPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMP-----------------------G 540
Query: 183 ASGLISSRGVPLRAGSQGAQ----PPGRSRRLRGEDG-----------GAARTAADRGSP 227
+ G S G P GSQG PPG S RG+ G GA +RG P
Sbjct: 541 SPGGPGSDGKPGPPGSQGESGRPGPPGPSGP-RGQPGVMGFPGPKGNDGAPGKNGERGGP 599
Query: 228 -APWPVTPP 235
P P PP
Sbjct: 600 GGPGPQGPP 608
Score = 35.8 bits (81), Expect = 0.034
Identities = 60/244 (24%), Positives = 80/244 (32%), Gaps = 34/244 (13%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRGRGRMRSLAFTGFTRETRPL 69
G++GPP G G G L P R S + +G G + E P
Sbjct: 936 GAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGP- 994
Query: 70 QLPSQQGRDVLRASVCSPG----PGTFGALSRPTSGFQPRSRPRERPARTHLFLPSLPRA 125
P QG L + PG PG+ G R S P + R P P A
Sbjct: 995 --PGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGS-------PGGKGDRGENGSPGAPGA 1045
Query: 126 RCRREAFPGPSDP-----RAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRR 180
PGP P ++G+ GP G+ R A + R R
Sbjct: 1046 ----PGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRG-APGPQGPRGDKGETGER 1100
Query: 181 YSASGLISSRGVPLRAGSQGAQPPGRSRRL---------RGEDGGAARTAADRGSPAPWP 231
A+G+ RG P G+ G+ P + RG G + D S P P
Sbjct: 1101 -GAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGP 1159
Query: 232 VTPP 235
+ PP
Sbjct: 1160 IGPP 1163
Score = 34.3 bits (77), Expect = 0.098
Identities = 60/239 (25%), Positives = 79/239 (33%), Gaps = 38/239 (15%)
Query: 10 GSRGPPLPDGAFGGRDP------------RGFLALRSPLTAAPGRASRAQRRGRGRMRSL 57
G GPP P+G G P +G R L + + + + G G
Sbjct: 696 GGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVP 755
Query: 58 AFTGFTRETRPLQLPSQQGRDVLRASVCSPG-PGTFGALSRPTSGFQPRSRPRERPARTH 116
G T P+ P G+ + +PG PG G PR P ER
Sbjct: 756 GKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAG----------PRGSPGERGETGP 805
Query: 117 LFLPSLPRARCRREAFPGPSDPRAGEVKRQGPG-RGLGSRSSVRVRQVAAALRAFRTPLA 175
P A PG + G+ +R PG +G G V + P
Sbjct: 806 PGPAGFPGA-------PGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQG 858
Query: 176 VCTRRYS-----ASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDG--GAARTAADRGSP 227
V R S A+G +RG+P GS G P G+DG G A GSP
Sbjct: 859 VKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSP 917
Score = 31.2 bits (69), Expect = 0.83
Identities = 67/265 (25%), Positives = 83/265 (31%), Gaps = 74/265 (27%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRGRGRMRSLA----------- 58
G GPP P GA G P G + + PGR G ++ A
Sbjct: 210 GPSGPPGPPGAIGPSGPAG----KDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGH 265
Query: 59 --FTGFTRETRPLQLPSQQGRDVLRASVCSPGPGTFGALSRPTSGFQPRSRPRERPARTH 116
F G E P +G + L +PGP PR P ER
Sbjct: 266 RGFDGRNGEKGETGAPGLKGENGLPGENGAPGP------------MGPRGAPGERGR--- 310
Query: 117 LFLPSLPRARCRR--------EAFPGPSDP--------RAGEVKRQGPGRGLGSRSSVRV 160
P LP A R + PGP P G GP GS +
Sbjct: 311 ---PGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQ 367
Query: 161 R-----QVAAALRAFRTPLAV-----------CTRRYSASGLISSRGVPLRAGSQGAQPP 204
R Q A + P + A GL+ +RG P AG+ GA P
Sbjct: 368 RGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGA--P 425
Query: 205 GRSRRLRGEDGGAARTAADRGSPAP 229
G LRG G + A +G P P
Sbjct: 426 G----LRGGAGEPGKNGA-KGEPGP 445
Score = 27.7 bits (60), Expect = 9.2
Identities = 36/133 (27%), Positives = 44/133 (33%), Gaps = 9/133 (6%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPL--TAAPGRASRAQRRGRGRMRSLAFTGFTRETR 67
G G P P G G R G + P APG+ +R G G G ET
Sbjct: 558 GESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGK--NGERGGPGGPGPQGPPGKNGETG 615
Query: 68 PLQLPSQQGRDVLRASVCSPGPGTFGALSRPTSGFQP--RSRPRERPARTHLFLPSLPRA 125
P P G + PGP G P +G P +P E + P P
Sbjct: 616 PQGPPGPTGPGGDKGDTGPPGPQ--GLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGG 673
Query: 126 RCRREAFPGPSDP 138
+ A PG P
Sbjct: 674 KGDAGA-PGERGP 685
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 38.5 bits (88), Expect = 0.005
Identities = 59/239 (24%), Positives = 75/239 (31%), Gaps = 37/239 (15%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRGRGRMRSLAFTGFTRETRPL 69
G RGPP P G G P G L P G + +G G T T +
Sbjct: 2171 GPRGPPGPVGGHGDPGPPGAPGLAGP----AGPQGPSGLKGEPGETGPPGRGLTGPTGAV 2226
Query: 70 QLPSQQGRDVLRASVCSPG-PGTFGALSRP----TSGFQPRSRPRERPARTHLFLPSLPR 124
LP G L SPG PG G +P G + R P +P P
Sbjct: 2227 GLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPG-----VPGSP- 2280
Query: 125 ARCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRRYSAS 184
PGP P+ PG+ + + + A P +
Sbjct: 2281 ------GLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGA--------PGGLAGDLVGEP 2326
Query: 185 GLISSRGVPLRAGSQGAQPPGRSRRLRGEDG--GAARTAADRGSP------APWPVTPP 235
G RG+P G +G GEDG GA +G P +P P PP
Sbjct: 2327 GAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPP 2385
Score = 30.0 bits (66), Expect = 1.8
Identities = 67/239 (28%), Positives = 81/239 (33%), Gaps = 41/239 (17%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRG-RGRMRSLAFTGFTRETRP 68
GS G P P G G R PRG APG+ + G GR +G P
Sbjct: 1326 GSPGLPGPRGDPGERGPRG----PKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGP 1381
Query: 69 LQLPSQQGRDVL-----------RASVCSPGPGTFG-ALSRPTSGFQPRSRPRERPARTH 116
L P +G L R PGPG G A P P S + P
Sbjct: 1382 LGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPP 1441
Query: 117 LFLPSLPRARCRREAFPG-PSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLA 175
+ PG P P GE +GP +G + R F PL
Sbjct: 1442 GKKGEKGDSEDGAPGLPGQPGSP--GEQGPRGPPGAIGPKGD----------RGFPGPLG 1489
Query: 176 VCTRR--YSASGLISSRGVPLRAGSQGAQ----PPGRSRRLRGEDGGAARTAADRGSPA 228
+ G SRG+P AG GA+ PPG + R +GE G R G PA
Sbjct: 1490 EAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGR-QGEKGEPGRP----GDPA 1543
Score = 29.3 bits (64), Expect = 3.2
Identities = 28/90 (31%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSPLTAAPGRASRAQRRG-RGRMRSLAFTGFTRETRP 68
G RGPP P G G G L G A R RG RG G
Sbjct: 2022 GERGPPGPSGLAGEPGKPGIPGLPG-RAGGVGEAGRPGERGERGEKGERGEQGRDGPPGL 2080
Query: 69 LQLPSQQGRDVLRASVCSPGPGTFGALSRP 98
P G + SV PGPG G P
Sbjct: 2081 PGTPGPPGPPGPKVSVDEPGPGLSGEQGPP 2110
Score = 28.9 bits (63), Expect = 4.1
Identities = 54/221 (24%), Positives = 66/221 (29%), Gaps = 61/221 (27%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRS-PLTAAPGRASRAQRRGRGRMRSLAFTGFTRETRP 68
G +GPP +G G RG R P P + +R G +G E
Sbjct: 1985 GEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGP------SGLAGEPGK 2038
Query: 69 LQLPSQQGRDVLRASVCSPGPGTFGALSRPTSGFQPRSRPRERPARTHLFLPSLPRARCR 128
+P GR G G RP + R ER + P LP
Sbjct: 2039 PGIPGLPGR-----------AGGVGEAGRPGERGE-RGEKGERGEQGRDGPPGLPGT--- 2083
Query: 129 REAFPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRRYSASGLIS 188
PGP P +V PG GL GL
Sbjct: 2084 ----PGPPGPPGPKVSVDEPGPGLSGEQ-------------------------GPPGLKG 2114
Query: 189 SRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPAP 229
++G P GS G Q P R + G G DRG P P
Sbjct: 2115 AKGEP---GSNGDQGPKGDRGVPGIKG-------DRGEPGP 2145
Score = 28.1 bits (61), Expect = 7.0
Identities = 75/277 (27%), Positives = 91/277 (32%), Gaps = 69/277 (24%)
Query: 10 GSRGPPLPDGAFGGRDPRGFLALRSP--------LTAAP---------GRASRAQRRGRG 52
G RGPP P G G R P G R P L P G A +A GR
Sbjct: 1749 GFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRD 1808
Query: 53 RMRSL-AFTGFTRETRPLQLPSQQGRD---VLRASVCSPG-PGTFGALSRP----TSGFQ 103
+ L G + P LP + G D L PG PG G SG +
Sbjct: 1809 GLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGRE 1868
Query: 104 PRSRPRERPARTHLFLPSLPRARCRREAFPGPSDPRA----------------GEVKRQG 147
R P+ + P P PGP P GE +G
Sbjct: 1869 GRDGPKGERGAPGILGPQGP------PGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKG 1922
Query: 148 ----PG-RGL----GSRSSVRVRQVAAALRAFRTPLAVCTRRYSASGLI----SSRGVPL 194
PG RGL GS +V A ++A V T S+ + RG
Sbjct: 1923 EQGLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKG 1982
Query: 195 RAGSQGAQPPGRSRRL--RGEDGGAARTAADRGSPAP 229
+G QG PPG+ + GE G DRG P P
Sbjct: 1983 DSGEQG--PPGKEGPIGFPGERG----LKGDRGDPGP 2013
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 38.5 bits (88), Expect = 0.005
Identities = 52/205 (25%), Positives = 71/205 (34%), Gaps = 21/205 (10%)
Query: 35 PLTAAPGRASRAQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVLRASVCSPGPGTFGA 94
P AA SR+ + ++L + RP + + + AS G G+
Sbjct: 1017 PSPAAREEQSRSSASSQKGPQALTRSNSLSTPRPTRASRLRRARLGDASDTEAADGERGS 1076
Query: 95 LSRPTSGFQPRSRPRERPARTHLFLPSLPRARCRREAFPGPSDPRAGEVKRQGPGRGL-- 152
L P +P RP A+ L L R R +F G SDP A + GR +
Sbjct: 1077 LGNP----EPVGRPAAEQAKKLSRLDILAMPRKRAGSFTGTSDPEAAPARTSFSGRSVEL 1132
Query: 153 --GSRSSVRVRQVAAALRAFRT-----PLAVCTRRYSASGLISSRGVPLRAGSQGAQPPG 205
SR A + +A T P +R S S +S RAGS
Sbjct: 1133 CCASRKPTMAEARAVSRKAANTATTTGPRQPFSRARSGSARYTSTTQTPRAGS------- 1185
Query: 206 RSRRLRGEDGGAARTAADRGSPAPW 230
S R R G T D P P+
Sbjct: 1186 -SSRARSRAPGPRDTDDDEEEPDPY 1209
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapiens]
Length = 1554
Score = 38.5 bits (88), Expect = 0.005
Identities = 52/205 (25%), Positives = 71/205 (34%), Gaps = 21/205 (10%)
Query: 35 PLTAAPGRASRAQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVLRASVCSPGPGTFGA 94
P AA SR+ + ++L + RP + + + AS G G+
Sbjct: 1087 PSPAAREEQSRSSASSQKGPQALTRSNSLSTPRPTRASRLRRARLGDASDTEAADGERGS 1146
Query: 95 LSRPTSGFQPRSRPRERPARTHLFLPSLPRARCRREAFPGPSDPRAGEVKRQGPGRGL-- 152
L P +P RP A+ L L R R +F G SDP A + GR +
Sbjct: 1147 LGNP----EPVGRPAAEQAKKLSRLDILAMPRKRAGSFTGTSDPEAAPARTSFSGRSVEL 1202
Query: 153 --GSRSSVRVRQVAAALRAFRT-----PLAVCTRRYSASGLISSRGVPLRAGSQGAQPPG 205
SR A + +A T P +R S S +S RAGS
Sbjct: 1203 CCASRKPTMAEARAVSRKAANTATTTGPRQPFSRARSGSARYTSTTQTPRAGS------- 1255
Query: 206 RSRRLRGEDGGAARTAADRGSPAPW 230
S R R G T D P P+
Sbjct: 1256 -SSRARSRAPGPRDTDDDEEEPDPY 1279
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 38.1 bits (87), Expect = 0.007
Identities = 68/249 (27%), Positives = 82/249 (32%), Gaps = 67/249 (26%)
Query: 35 PLTAAPGRASRAQRRGRGRMRSLAFTGFTRETRPLQLPSQQGRDVLRASVCSPGPGTFGA 94
P+ AP R R G + TG L + GR L SPGP
Sbjct: 45 PILPAPQRPPTRAREWEGAAWAAGATGVGAALLALPGSRRLGRVPLTFREASPGPAPGAP 104
Query: 95 LSRPTSGFQPRSRPR-------ERPARTHLFL------------------------PSLP 123
+R + G +P R R +RPA PSLP
Sbjct: 105 RARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPRQRSLARCLPRSVGSCVRPSVGPSLP 164
Query: 124 RARCRREA----------FPGPSDPRAGEVKRQGPGRGLGSRSSVRVRQVAAALRAFRTP 173
R CRR P P PR LGS S R +AA L R P
Sbjct: 165 RRHCRRHCRCHCRRRPLPKPPPLQPR------------LGSASPPR---LAAPLAGSRAP 209
Query: 174 LAV-----CTRRYSASGLISSRGVPL-RAGSQGAQPPGRSRRLRGEDG--GAARTAADRG 225
C RR S + G+PL R+ S+G + G RR GE+ R G
Sbjct: 210 SLSPFPRRCRRRAERSP--AGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALG 267
Query: 226 SPAPWPVTP 234
SP P P P
Sbjct: 268 SP-PIPAGP 275
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 38.1 bits (87), Expect = 0.007
Identities = 47/169 (27%), Positives = 61/169 (36%), Gaps = 31/169 (18%)
Query: 10 GSRGPPLPDGAFG--------GRDPRGFLALRSPLTAAPG-RASRAQRRGRGRMRSLAFT 60
G++GPP P GA G G+ P FL L + + G R Q+ RG F
Sbjct: 1289 GNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFF 1348
Query: 61 GFTRETRPLQLPSQQGRDVLRASVCSPG---------PGTFGALSRPTSGFQPRSRPRER 111
G + LP G R PG PG G P G++ R P
Sbjct: 1349 GSS-------LPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGP 1401
Query: 112 PARTHLFLPSLPRARCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRV 160
P PS P + + PGP P GP +G+ S VR+
Sbjct: 1402 PGPPG--PPSFPGPHRQTISVPGPPGPPG----PPGPPGTMGASSGVRL 1444
Score = 28.9 bits (63), Expect = 4.1
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 183 ASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPA-PWPVTPP 235
A G+ G+P R G G Q P R RGE G + G P P P PP
Sbjct: 1073 ADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGV--GQPGLPGPPGPP 1124
Score = 27.7 bits (60), Expect = 9.2
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 180 RYSASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDG--GAARTAADRGSPAP 229
R G + G P GS+GA P + RGE G GA A G P P
Sbjct: 966 RTGQKGSLGEAGAPGHKGSKGAPGPAGA---RGESGLAGAPGPAGPPGPPGP 1014
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 38.1 bits (87), Expect = 0.007
Identities = 47/169 (27%), Positives = 61/169 (36%), Gaps = 31/169 (18%)
Query: 10 GSRGPPLPDGAFG--------GRDPRGFLALRSPLTAAPG-RASRAQRRGRGRMRSLAFT 60
G++GPP P GA G G+ P FL L + + G R Q+ RG F
Sbjct: 874 GNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFF 933
Query: 61 GFTRETRPLQLPSQQGRDVLRASVCSPG---------PGTFGALSRPTSGFQPRSRPRER 111
G + LP G R PG PG G P G++ R P
Sbjct: 934 GSS-------LPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGP 986
Query: 112 PARTHLFLPSLPRARCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRV 160
P PS P + + PGP P GP +G+ S VR+
Sbjct: 987 PGPPG--PPSFPGPHRQTISVPGPPGPPG----PPGPPGTMGASSGVRL 1029
Score = 28.9 bits (63), Expect = 4.1
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 183 ASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPA-PWPVTPP 235
A G+ G+P R G G Q P R RGE G + G P P P PP
Sbjct: 658 ADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGV--GQPGLPGPPGPP 709
Score = 27.7 bits (60), Expect = 9.2
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 180 RYSASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDG--GAARTAADRGSPAP 229
R G + G P GS+GA P + RGE G GA A G P P
Sbjct: 551 RTGQKGSLGEAGAPGHKGSKGAPGPAGA---RGESGLAGAPGPAGPPGPPGP 599
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 38.1 bits (87), Expect = 0.007
Identities = 47/169 (27%), Positives = 61/169 (36%), Gaps = 31/169 (18%)
Query: 10 GSRGPPLPDGAFG--------GRDPRGFLALRSPLTAAPG-RASRAQRRGRGRMRSLAFT 60
G++GPP P GA G G+ P FL L + + G R Q+ RG F
Sbjct: 1054 GNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKGDRGDAGQKGERGEPGGGGFF 1113
Query: 61 GFTRETRPLQLPSQQGRDVLRASVCSPG---------PGTFGALSRPTSGFQPRSRPRER 111
G + LP G R PG PG G P G++ R P
Sbjct: 1114 GSS-------LPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGP 1166
Query: 112 PARTHLFLPSLPRARCRREAFPGPSDPRAGEVKRQGPGRGLGSRSSVRV 160
P PS P + + PGP P GP +G+ S VR+
Sbjct: 1167 PGPPG--PPSFPGPHRQTISVPGPPGPPG----PPGPPGTMGASSGVRL 1209
Score = 28.9 bits (63), Expect = 4.1
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 183 ASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDGGAARTAADRGSPA-PWPVTPP 235
A G+ G+P R G G Q P R RGE G + G P P P PP
Sbjct: 838 ADGVPGFPGLPGREGIAGPQGPKGDRGSRGEKGDPGKDGV--GQPGLPGPPGPP 889
Score = 27.7 bits (60), Expect = 9.2
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 180 RYSASGLISSRGVPLRAGSQGAQPPGRSRRLRGEDG--GAARTAADRGSPAP 229
R G + G P GS+GA P + RGE G GA A G P P
Sbjct: 731 RTGQKGSLGEAGAPGHKGSKGAPGPAGA---RGESGLAGAPGPAGPPGPPGP 779
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 38.1 bits (87), Expect = 0.007
Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 19/159 (11%)
Query: 87 PGPGTFGALSRPTSGFQPRSRPRERP-ARTHLFLPSLPRARCRREAFPGPSDPRAGEVKR 145
P P + +PRSR R + +RT PS R R R + PR +R
Sbjct: 259 PSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPR----RR 314
Query: 146 QGPGRGLGSRSSVRVRQVAAALRAFRTPLAVCTRRYSASGLISS---------RGVPLRA 196
P R R R++ R R+ V RR S++ L S R P +
Sbjct: 315 PSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKP 374
Query: 197 GSQGAQPPGRSRRLRGEDGGAARTAADRGSPAPWPVTPP 235
+ + PP ++RRL +A R P+P P TPP
Sbjct: 375 PKRTSSPPRKTRRL----SPSASPPRRRHRPSP-PATPP 408
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 37.7 bits (86), Expect = 0.009
Identities = 41/127 (32%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 109 RERPARTHLF--LPSLPRARCRREAFPGPS----DPRAGEVKRQGPGRGLGSRSSVRVRQ 162
RE T LF +P LP+A+ PGP D G++ R G SS+ +RQ
Sbjct: 747 REGVPPTALFHPMPVLPKAQ------PGPEVRIYDSNTGKLIRTGARGPPAPSSSLPIRQ 800
Query: 163 VAAALRAFRTPLAVCTRRYSASGLISSRGVPLRAGSQGAQPPGRS---RRLRGEDGGAAR 219
++ R + T + G + SR GSQG GRS R RG GA
Sbjct: 801 EPSSFRWTTSLEKAATTATARRGGLRSRRRSPSPGSQGPAGSGRSGHLRPARGARQGAGG 860
Query: 220 TAADRGS 226
A RGS
Sbjct: 861 PEATRGS 867
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,382,858
Number of Sequences: 37866
Number of extensions: 733143
Number of successful extensions: 4524
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 302
Number of HSP's that attempted gapping in prelim test: 3829
Number of HSP's gapped (non-prelim): 843
length of query: 239
length of database: 18,247,518
effective HSP length: 99
effective length of query: 140
effective length of database: 14,498,784
effective search space: 2029829760
effective search space used: 2029829760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.