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Search of human proteins with 169206560
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169206560 PREDICTED: hypothetical protein [Homo sapiens]
(148 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169206560 PREDICTED: hypothetical protein [Homo sapiens] 320 4e-88
gi|169205714 PREDICTED: hypothetical protein [Homo sapiens] 320 4e-88
gi|169206277 PREDICTED: hypothetical protein [Homo sapiens] 318 1e-87
gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo ... 39 0.002
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 39 0.002
gi|188536047 SWI/SNF-related matrix-associated actin-dependent r... 37 0.005
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 37 0.008
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.018
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 35 0.030
gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo ... 34 0.039
gi|148613878 acrosin precursor [Homo sapiens] 34 0.039
gi|38787970 tensin like C1 domain containing phosphatase isoform... 34 0.051
gi|38787957 tensin like C1 domain containing phosphatase isoform... 34 0.051
gi|38787941 tensin like C1 domain containing phosphatase isoform... 34 0.051
gi|113411424 PREDICTED: hypothetical protein [Homo sapiens] 33 0.067
gi|239741271 PREDICTED: hypothetical protein [Homo sapiens] 33 0.067
gi|71043876 undifferentiated embryonic cell transcription factor... 33 0.087
gi|166362732 ELK1 protein [Homo sapiens] 33 0.11
gi|166362730 ELK1 protein [Homo sapiens] 33 0.11
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 32 0.15
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 32 0.15
gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens] 32 0.19
gi|157168329 formin 1 [Homo sapiens] 32 0.25
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 32 0.25
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 32 0.25
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 32 0.25
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 32 0.25
gi|157388908 hypothetical protein LOC54954 [Homo sapiens] 32 0.25
gi|32307166 Rho guanine exchange factor 15 [Homo sapiens] 32 0.25
gi|148727370 immediate early response 5-like [Homo sapiens] 32 0.25
>gi|169206560 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 320 bits (819), Expect = 4e-88
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MRTGTLSVSFELRPQSARETYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWR 60
MRTGTLSVSFELRPQSARETYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWR
Sbjct: 1 MRTGTLSVSFELRPQSARETYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWR 60
Query: 61 QRGLRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGR 120
QRGLRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGR
Sbjct: 61 QRGLRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGR 120
Query: 121 RPEAIQLPGPPSPASPLYPPKAPGFWAF 148
RPEAIQLPGPPSPASPLYPPKAPGFWAF
Sbjct: 121 RPEAIQLPGPPSPASPLYPPKAPGFWAF 148
>gi|169205714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 320 bits (819), Expect = 4e-88
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MRTGTLSVSFELRPQSARETYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWR 60
MRTGTLSVSFELRPQSARETYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWR
Sbjct: 1 MRTGTLSVSFELRPQSARETYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWR 60
Query: 61 QRGLRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGR 120
QRGLRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGR
Sbjct: 61 QRGLRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGR 120
Query: 121 RPEAIQLPGPPSPASPLYPPKAPGFWAF 148
RPEAIQLPGPPSPASPLYPPKAPGFWAF
Sbjct: 121 RPEAIQLPGPPSPASPLYPPKAPGFWAF 148
>gi|169206277 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 318 bits (815), Expect = 1e-87
Identities = 147/148 (99%), Positives = 147/148 (99%)
Query: 1 MRTGTLSVSFELRPQSARETYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWR 60
MRTGTLSVSFELRPQSARETYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWR
Sbjct: 1 MRTGTLSVSFELRPQSARETYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWR 60
Query: 61 QRGLRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGR 120
QRGLRGKLLPSAEPQKRWIGPRGAFPRPYLFPPC MDTVLGGRSPHLERPPTVCRHPVGR
Sbjct: 61 QRGLRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCAMDTVLGGRSPHLERPPTVCRHPVGR 120
Query: 121 RPEAIQLPGPPSPASPLYPPKAPGFWAF 148
RPEAIQLPGPPSPASPLYPPKAPGFWAF
Sbjct: 121 RPEAIQLPGPPSPASPLYPPKAPGFWAF 148
>gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo
sapiens]
Length = 225
Score = 38.9 bits (89), Expect = 0.002
Identities = 38/132 (28%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
Query: 13 RPQSARETYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWRQRGLRGKLLPSA 72
RP S T+P PS S R V PG+ R + P
Sbjct: 4 RPVSVGSTWPSTHSVVLPSRSPDSVVLPSRSPDSVVLPPGSPDSVVLPSRSPDSVVPPPG 63
Query: 73 EPQKRWIGPRGAFPRPYLFPPCVMDTV-LGGRSPHLERPPTVCRHPVGRRPEAIQLPGPP 131
P + PR P + PP D+V L RSP PP R P+++ +P P
Sbjct: 64 SPDSVVLPPRS--PDSVVPPPGSPDSVVLPPRSPDSVVPPP-------RSPDSV-VPPPG 113
Query: 132 SPASPLYPPKAP 143
SP S + PP++P
Sbjct: 114 SPDSVVLPPRSP 125
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 38.9 bits (89), Expect = 0.002
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 44 RPPFVSSP-GTQFGTAWRQRGLRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMDTVLGG 102
+P F S P G + A Q G RG S PQ R + PR +P + + GG
Sbjct: 233 QPSFYSGPLGPTYPAA--QLGPRGAAGYSWSPQ-RSMPPRPGYPGTPMGASGPGYPLRGG 289
Query: 103 RSP------HLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPPKAPG 144
R+P P T + P +P+ PG P P+ PL PP PG
Sbjct: 290 RAPSPGYPQQSPYPATGGKPPYPIQPQLPSFPGQPQPSVPLQPPYPPG 337
Score = 33.5 bits (75), Expect = 0.067
Identities = 36/127 (28%), Positives = 45/127 (35%), Gaps = 23/127 (18%)
Query: 20 TYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWRQRGLRGKLLPSAEPQKRWI 79
TYP P G R PP PGT G + LRG PS
Sbjct: 244 TYP--AAQLGPRGAAGYSWSPQRSMPPRPGYPGTPMGASGPGYPLRGGRAPSP------- 294
Query: 80 GPRGAFPRPYLFPPCVMDTVLGGRSPHLERP--PTVCRHPVGRRPEAIQLPGPPSPASPL 137
+P+ +P GG+ P+ +P P+ P P +Q P PP PA P
Sbjct: 295 ----GYPQQSPYP------ATGGKPPYPIQPQLPSFPGQPQPSVP--LQPPYPPGPAPPY 342
Query: 138 YPPKAPG 144
P PG
Sbjct: 343 GFPPPPG 349
>gi|188536047 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c1 [Homo sapiens]
Length = 1105
Score = 37.4 bits (85), Expect = 0.005
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Query: 45 PPFVSSPGTQFGTAWRQRG--LRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMDTVLGG 102
PP PG G G + G+++P+ I P G+ P P PP + +LG
Sbjct: 1008 PPHPPQPGQIPGPGSMMPGQHMPGRMIPTVAAN---IHPSGSGPTPPGMPP-MPGNILGP 1063
Query: 103 RSPHLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPPKAPG 144
R P L P + +P P Q P PP PA + PP APG
Sbjct: 1064 RVP-LTAPNGM--YP----PPPQQQPPPPPPADGVPPPPAPG 1098
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 36.6 bits (83), Expect = 0.008
Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 40 AIRHRPPFVSSPGTQFGTAWRQRGLRGKLLPSAEPQKRWIGPRGAFPRPY-----LFPPC 94
A+R PP+ PGTQ G + +L PQ + GA PRP PP
Sbjct: 4236 AVRQTPPY-QEPGTQTSPLQGLLGCQPQLGGFPGPQTGPLQELGAGPRPQGPPRLPAPPG 4294
Query: 95 VMDT--VLGGRSPHLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPPKAPG 144
+ T VLG H PP+ + P +RP + P P PP PG
Sbjct: 4295 ALSTGPVLG--PVHPTPPPSSPQEP--KRPSQLPSPSSQLPTEAQLPPTHPG 4342
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 35.4 bits (80), Expect = 0.018
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 88 PYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGRRPEAIQLPGPPSPAS-PLYPPKAP 143
P L PP + +PHLE PP P+ P + P P +P+S PP+AP
Sbjct: 539 PSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAP 595
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 34.7 bits (78), Expect = 0.030
Identities = 33/102 (32%), Positives = 36/102 (35%), Gaps = 13/102 (12%)
Query: 45 PPFVSSPGTQFGTAWRQRGLRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMDTVLGGRS 104
PP V PG FG + G L P P GP P P PP
Sbjct: 274 PPPVLFPGQPFG-----QPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPP-------PPPG 321
Query: 105 PHLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPPKAPGFW 146
P RPP P+ P LPGPP A P P P F+
Sbjct: 322 PFPPRPPGPLGPPLTLAPPP-HLPGPPPGAPPPAPHVNPAFF 362
Score = 30.0 bits (66), Expect = 0.74
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 80 GPRGAFPRPYLFPPCVMDTVLGGRSPHLERPPTVC--RHPVGRRPEAIQLPGPPSPASPL 137
GP G P + PP + G P PP V P G+ P PGPP P
Sbjct: 248 GPPGPPPPGQVLPPPLAGPPNRGDRP----PPPVLFPGQPFGQPPLGPLPPGPPPPVPGY 303
Query: 138 YPPKAP 143
PP P
Sbjct: 304 GPPPGP 309
>gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo
sapiens]
Length = 210
Score = 34.3 bits (77), Expect = 0.039
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 45 PPFVSSPGTQFGTAWRQRGLRGKLLPSAEPQKRWIGPRGAFPRPYLFPPCVMDTVLGGRS 104
P V+S G G++W +LPS P + P P + PP D+V+
Sbjct: 43 PLLVTSSGIGQGSSWPST--HSVVLPSRSPDS--VVPPPGSPDSVVPPPRSPDSVV---- 94
Query: 105 PHLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPPKAP 143
P P +V P R P+++ +P P SP S + PP++P
Sbjct: 95 PPPGSPDSVVLPP--RSPDSV-VPPPGSPDSVVLPPRSP 130
>gi|148613878 acrosin precursor [Homo sapiens]
Length = 421
Score = 34.3 bits (77), Expect = 0.039
Identities = 40/153 (26%), Positives = 51/153 (33%), Gaps = 25/153 (16%)
Query: 12 LRPQSARETYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWRQRGLRGKLLPS 71
++P + YP T GG C +V T +G R R + +
Sbjct: 219 VQPTNVCAGYPVGKIDTCQGDSGGPLMCKDSKESAYVVVGITSWGVGCA-RAKRPGIYTA 277
Query: 72 AEPQKRWIGPR-----------GAFPRPYLFPPCVMDTVLGGRSPHLE---RPPTVCRHP 117
P WI + P P PP + S HL +PP P
Sbjct: 278 TWPYLNWIASKIGSNALRMIQSATPPPPTTRPPPIRPPFSHPISAHLPWYFQPPP---RP 334
Query: 118 VGRRPEAIQL-------PGPPSPASPLYPPKAP 143
+ RP A Q P PP PASPL PP P
Sbjct: 335 LPPRPPAAQPRPPPSPPPPPPPPASPLPPPPPP 367
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 33.9 bits (76), Expect = 0.051
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 108 ERPPTVCRHPVGRRPEAIQLPGP----PSPASPLYPPKAPGFW 146
E P V + G+ PE GP PSP SP +PP +P W
Sbjct: 820 EALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDW 862
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 33.9 bits (76), Expect = 0.051
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 108 ERPPTVCRHPVGRRPEAIQLPGP----PSPASPLYPPKAPGFW 146
E P V + G+ PE GP PSP SP +PP +P W
Sbjct: 944 EALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDW 986
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 33.9 bits (76), Expect = 0.051
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 108 ERPPTVCRHPVGRRPEAIQLPGP----PSPASPLYPPKAPGFW 146
E P V + G+ PE GP PSP SP +PP +P W
Sbjct: 954 EALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDW 996
>gi|113411424 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 33.5 bits (75), Expect = 0.067
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 24/87 (27%)
Query: 78 WIGPRGAFPRPYLFPPC------------VMDTVLGGRSPHLERPPTVCRHPVGRRPEAI 125
W G R A P P+ PPC + +LG + RPP C PV EA
Sbjct: 21 WTGRRAASPTPHPLPPCRRRLRLLLRQAKKLGRLLGAQ----RRPPVSCDLPVLLSAEA- 75
Query: 126 QLPGPPSPAS------PLYPPKAPGFW 146
PG P S L PP+ W
Sbjct: 76 -RPGAPEAGSIPVAWRQLQPPQTAARW 101
>gi|239741271 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 33.5 bits (75), Expect = 0.067
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 24/87 (27%)
Query: 78 WIGPRGAFPRPYLFPPC------------VMDTVLGGRSPHLERPPTVCRHPVGRRPEAI 125
W G R A P P+ PPC + +LG + RPP C PV EA
Sbjct: 21 WTGRRAASPTPHPLPPCRRRLRLLLRQAKKLGRLLGAQ----RRPPVSCDLPVLLSAEA- 75
Query: 126 QLPGPPSPAS------PLYPPKAPGFW 146
PG P S L PP+ W
Sbjct: 76 -WPGAPEAGSIPVAWRQLQPPQTAARW 101
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 33.1 bits (74), Expect = 0.087
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 120 RRPEAIQLPGPPSPASPLYPPKAPG 144
RRP + P PPSPASP P+ PG
Sbjct: 6 RRPPPLAPPAPPSPASPDPEPRTPG 30
>gi|166362732 ELK1 protein [Homo sapiens]
Length = 428
Score = 32.7 bits (73), Expect = 0.11
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 88 PYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPPKAPG 144
P P VMDT G H P + + GR+P ++LP PS P + PG
Sbjct: 283 PARLPAVVMDTA-GQAGGHAASSPEISQPQKGRKPRDLELPLSPSLLGGPGPERTPG 338
>gi|166362730 ELK1 protein [Homo sapiens]
Length = 428
Score = 32.7 bits (73), Expect = 0.11
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 88 PYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPPKAPG 144
P P VMDT G H P + + GR+P ++LP PS P + PG
Sbjct: 283 PARLPAVVMDTA-GQAGGHAASSPEISQPQKGRKPRDLELPLSPSLLGGPGPERTPG 338
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 32.3 bits (72), Expect = 0.15
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 88 PYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPPKAP 143
P + P V LG SP L R P P G P A PGPP PASP P +P
Sbjct: 740 PQVARPLVGPLALG--SPRLVRRP-----PPGPAPAAAS-PGPPPPASPPGAPASP 787
Score = 26.9 bits (58), Expect = 6.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 119 GRRPEAIQLPGPPSPASPLYPPKAP 143
G P A PGPP P P P + P
Sbjct: 11 GESPGATPAPGPPPPPPPAPPQQQP 35
>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
[Homo sapiens]
Length = 355
Score = 32.3 bits (72), Expect = 0.15
Identities = 37/146 (25%), Positives = 48/146 (32%), Gaps = 18/146 (12%)
Query: 12 LRPQSARETYPFRGRTTTPSSLGGSRACAIRHRPPFVSSPGTQFGTAWRQRGLRGKLLPS 71
++P + YP T GG C V T +G R R + +
Sbjct: 153 VQPTNVCAGYPVGKIDTCQGDSGGPLMCKDSKESACVVVGITSWGVGCA-RAKRPGIYTA 211
Query: 72 AEPQKRWIGPR-----------GAFPRPYLFPPCVMDTVLGGRSPHLE---RPPTVCRHP 117
P WI + P P PP + S HL +PP P
Sbjct: 212 TWPYLNWIASKIGSNALRMIQSATPPPPTTRPPPIRPPFSHPLSAHLPWYFQPPP---RP 268
Query: 118 VGRRPEAIQLPGPPSPASPLYPPKAP 143
+ RP A Q PPSP P PP +P
Sbjct: 269 LPPRPPAAQPRPPPSPPPPPPPPPSP 294
>gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]
Length = 511
Score = 32.0 bits (71), Expect = 0.19
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 80 GPRGAFPRPYLFPPCVMDTVLGGRSPHL--ERPPTVCRHPVG------RRPEAIQLPGPP 131
G P P PP + L R HL RPP HP R+P +QLP PP
Sbjct: 129 GTSAPTPLPTPVPPPLAPAQLRHRLRHLLAARPPG---HPGAAHSRKQRQPARLQLPAPP 185
Query: 132 SPASPLYPPKAPGFWA 147
+PA P P A
Sbjct: 186 TPAKAEGPDADPSLSA 201
Score = 29.3 bits (64), Expect = 1.3
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 81 PRGAFPRPYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPP 140
P G + P C++ G R P ++ P PV P + PGPP+P PP
Sbjct: 299 PEGCPTETPVQPDCILS---GSRPPGVKTPGP----PVALFPFHLGAPGPPAP-----PP 346
Query: 141 KAP 143
AP
Sbjct: 347 SAP 349
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 31.6 bits (70), Expect = 0.25
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 92 PPCVMDTVLGGRSPHLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPPKAPG 144
PP + + LG SP PP P LP PP P PL PP + G
Sbjct: 654 PPPPLPSGLGSLSPAPPMPPVSAGPP---------LPPPPPPPPPLPPPSSAG 697
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 31.6 bits (70), Expect = 0.25
Identities = 37/117 (31%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 32 SLGGSRACAIRHRPPFVSSPGTQFGTAWRQRGLRGKLLPSAEPQKRWIGPRGAFPRPYLF 91
+L G +A A R PP SP G+A L P+ EP FPR +
Sbjct: 263 ALNGRQAEATRASPP--RSPAEPKGSA---------LGPNPEPHL-------TFPRSFKV 304
Query: 92 PPCVMDTVLGGRSPHLERPPTVCRHPVGRRPEA-IQLPGPPS----PASPLYPPKAP 143
PP T + S ++ R G +A +LP PPS PAS +YP +AP
Sbjct: 305 PP---PTPVRTSSIPVQEAQEAPRKEEGATKKAPSRLPLPPSFHIRPASQVYPDRAP 358
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 31.6 bits (70), Expect = 0.25
Identities = 37/117 (31%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 32 SLGGSRACAIRHRPPFVSSPGTQFGTAWRQRGLRGKLLPSAEPQKRWIGPRGAFPRPYLF 91
+L G +A A R PP SP G+A L P+ EP FPR +
Sbjct: 263 ALNGRQAEATRASPP--RSPAEPKGSA---------LGPNPEPHL-------TFPRSFKV 304
Query: 92 PPCVMDTVLGGRSPHLERPPTVCRHPVGRRPEA-IQLPGPPS----PASPLYPPKAP 143
PP T + S ++ R G +A +LP PPS PAS +YP +AP
Sbjct: 305 PP---PTPVRTSSIPVQEAQEAPRKEEGATKKAPSRLPLPPSFHIRPASQVYPDRAP 358
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 31.6 bits (70), Expect = 0.25
Identities = 37/117 (31%), Positives = 49/117 (41%), Gaps = 26/117 (22%)
Query: 32 SLGGSRACAIRHRPPFVSSPGTQFGTAWRQRGLRGKLLPSAEPQKRWIGPRGAFPRPYLF 91
+L G +A A R PP SP G+A L P+ EP FPR +
Sbjct: 263 ALNGRQAEATRASPP--RSPAEPKGSA---------LGPNPEPHL-------TFPRSFKV 304
Query: 92 PPCVMDTVLGGRSPHLERPPTVCRHPVGRRPEA-IQLPGPPS----PASPLYPPKAP 143
PP T + S ++ R G +A +LP PPS PAS +YP +AP
Sbjct: 305 PP---PTPVRTSSIPVQEAQEAPRKEEGATKKAPSRLPLPPSFHIRPASQVYPDRAP 358
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 31.6 bits (70), Expect = 0.25
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 104 SPHLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPPKAP 143
SPH RPP+ R P RP+++ P P P PP+AP
Sbjct: 793 SPHPTRPPS--RPP--SRPQSVSRPPSEPPLHPCPPPQAP 828
>gi|157388908 hypothetical protein LOC54954 [Homo sapiens]
Length = 1096
Score = 31.6 bits (70), Expect = 0.25
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 82 RGAFPRPYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPPK 141
RG+ P PP + GG P P H G+ + P PP P PP+
Sbjct: 58 RGSVPLQPPLPPAALGAYSGGAGPIRHHHPAHHFHHHGQAQPGLHPPLPPPP-----PPQ 112
Query: 142 APG 144
PG
Sbjct: 113 LPG 115
>gi|32307166 Rho guanine exchange factor 15 [Homo sapiens]
Length = 841
Score = 31.6 bits (70), Expect = 0.25
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 78 WIGPRGAFPRPYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGRRPEAIQLPGPPSPASPL 137
W P + P L PP L ++ T PV RR + + P+P SP+
Sbjct: 63 WEPPAASLKPPALLPPSASRASLDSQTSPDSPSSTPTPSPVSRRSASPE----PAPRSPV 118
Query: 138 YPPKAPG 144
PPK G
Sbjct: 119 PPPKPSG 125
Score = 27.3 bits (59), Expect = 4.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 100 LGGRSPHLERPPTVCRHPVGRRPEAIQLPGPPSPAS 135
L +P ++PP + R R A Q PGPP S
Sbjct: 6 LPAATPPTQKPPRIIRPRPPSRSRAAQSPGPPHNGS 41
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 31.6 bits (70), Expect = 0.25
Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 83 GAFPRPYLFPPCVMDTVLGGRSPHLERPPTVCRHPVGRRPEAIQLPGPPSPASPLYPPKA 142
G P P PP L R P R P C P G P A P SPA P +
Sbjct: 181 GPAPLPLPLPPPA-PAALCPRDP---RAPAACSAPPGAAPPAAAASPPASPA----PASS 232
Query: 143 PGFW 146
PGF+
Sbjct: 233 PGFY 236
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,056,077
Number of Sequences: 37866
Number of extensions: 585831
Number of successful extensions: 4410
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 237
Number of HSP's that attempted gapping in prelim test: 3564
Number of HSP's gapped (non-prelim): 1086
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.