Guide to the Human Genome
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Search of human proteins with 169205503

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]
         (117 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169204982 PREDICTED: hypothetical protein [Homo sapiens]           254   1e-68
gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]           254   1e-68
gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]           254   1e-68
gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo ...    50   3e-07
gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo ...    50   3e-07
gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo ...    50   3e-07
gi|116256455 zinc finger protein 429 [Homo sapiens]                    42   1e-04
gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo s...    40   4e-04
gi|148664226 plakophilin 2 isoform 2b [Homo sapiens]                   37   0.003
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]     34   0.022
gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens]           34   0.028
gi|59859882 baculoviral IAP repeat-containing protein 5 isoform ...    33   0.037
gi|144953913 zinc finger protein 714 [Homo sapiens]                    32   0.082
gi|148277022 selenoprotein P isoform 2 [Homo sapiens]                  31   0.24 
gi|239752927 PREDICTED: similar to hCG1995379 [Homo sapiens]           30   0.41 
gi|239747492 PREDICTED: hypothetical protein XP_002347548 [Homo ...    30   0.41 
gi|239741366 PREDICTED: hypothetical protein XP_002342186 [Homo ...    30   0.41 
gi|59938780 WD repeat domain 31 isoform 1 [Homo sapiens]               30   0.53 
gi|21687048 WD repeat domain 31 isoform 3 [Homo sapiens]               30   0.53 
gi|11038659 ADAM metallopeptidase with thrombospondin type 1 mot...    30   0.53 
gi|217035140 zinc finger protein 669 isoform 2 [Homo sapiens]          28   1.2  
gi|217035138 zinc finger protein 669 isoform 1 [Homo sapiens]          28   1.2  
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]    28   1.2  
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]    28   1.2  
gi|20336212 guanidinoacetate N-methyltransferase isoform b [Homo...    28   1.6  
gi|40217812 cell cycle progression 2 protein isoform 1 [Homo sap...    28   1.6  
gi|119220562 cytochrome P450, family 4, subfamily F, polypeptide...    28   2.0  
gi|21704279 jagged 2 isoform b precursor [Homo sapiens]                28   2.0  
gi|21704277 jagged 2 isoform a precursor [Homo sapiens]                28   2.0  
gi|91982767 semaphorin 5B isoform 1 [Homo sapiens]                     28   2.0  

>gi|169204982 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score =  254 bits (649), Expect = 1e-68
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW 60
           MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW
Sbjct: 1   MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW 60

Query: 61  WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
           WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY
Sbjct: 61  WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117


>gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score =  254 bits (649), Expect = 1e-68
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW 60
           MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW
Sbjct: 1   MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW 60

Query: 61  WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
           WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY
Sbjct: 61  WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117


>gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score =  254 bits (649), Expect = 1e-68
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW 60
           MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW
Sbjct: 1   MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW 60

Query: 61  WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
           WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY
Sbjct: 61  WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117


>gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo
           sapiens]
          Length = 120

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 25/36 (69%), Positives = 26/36 (72%)

Query: 82  VPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
           V HT NPSTLGGRGG I  GQE KTSL  M +P LY
Sbjct: 85  VAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120


>gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo
           sapiens]
          Length = 120

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 25/36 (69%), Positives = 26/36 (72%)

Query: 82  VPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
           V HT NPSTLGGRGG I  GQE KTSL  M +P LY
Sbjct: 85  VAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120


>gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo
           sapiens]
          Length = 120

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 25/36 (69%), Positives = 26/36 (72%)

Query: 82  VPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
           V HT NPSTLGGRGG I  GQE KTSL  M +P LY
Sbjct: 85  VAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120


>gi|116256455 zinc finger protein 429 [Homo sapiens]
          Length = 674

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 69  LSQHLKRHCQPSVVPHTCNPSTLGGRGGQI 98
           L+QH K H +  VV H CNPSTLGGRGG+I
Sbjct: 636 LTQHKKIH-RMGVVAHACNPSTLGGRGGRI 664


>gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo
           sapiens]
          Length = 291

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 16/26 (61%), Positives = 17/26 (65%)

Query: 79  PSVVPHTCNPSTLGGRGGQIPSGQEC 104
           P  V H CNPSTLGGRGG+I     C
Sbjct: 265 PGAVAHACNPSTLGGRGGRITRSGRC 290


>gi|148664226 plakophilin 2 isoform 2b [Homo sapiens]
          Length = 881

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 67  HTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQI 98
           HT++    R+  P  V H CNPSTLGG+GG+I
Sbjct: 461 HTVNLR-SRNGWPGAVAHACNPSTLGGQGGRI 491


>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
          Length = 374

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 14/17 (82%), Positives = 14/17 (82%)

Query: 82  VPHTCNPSTLGGRGGQI 98
           V H CNPSTLGGRGG I
Sbjct: 348 VAHACNPSTLGGRGGWI 364


>gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens]
          Length = 342

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 80  SVVPHTCNPSTLGGRGGQIPSGQE 103
           + V HTCNPSTLGG+G  I   +E
Sbjct: 314 AAVAHTCNPSTLGGQGEWITGSRE 337


>gi|59859882 baculoviral IAP repeat-containing protein 5 isoform 3
           [Homo sapiens]
          Length = 165

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 79  PSVVPHTCNPSTLGGRGGQIPSGQECKTS 107
           P  V + CN STLGGRGG+I   +  K S
Sbjct: 76  PGTVAYACNTSTLGGRGGRITREEHKKHS 104


>gi|144953913 zinc finger protein 714 [Homo sapiens]
          Length = 555

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 68  TLSQHLKRHCQPSVVPHTCNPSTLGGRGGQI 98
           TL++H  R  Q  +V H CNP+TL G G QI
Sbjct: 495 TLTKH--RKIQQGMVAHACNPNTLRGLGEQI 523


>gi|148277022 selenoprotein P isoform 2 [Homo sapiens]
          Length = 411

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 12/17 (70%), Positives = 14/17 (82%)

Query: 82 VPHTCNPSTLGGRGGQI 98
          V H CNPSTLGG+G +I
Sbjct: 8  VAHACNPSTLGGQGRRI 24


>gi|239752927 PREDICTED: similar to hCG1995379 [Homo sapiens]
          Length = 119

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 5  WGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLP 44
          W   C L ++F+PLLS   + +   PS  L  TLT + LP
Sbjct: 42 WPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLP 81


>gi|239747492 PREDICTED: hypothetical protein XP_002347548 [Homo
          sapiens]
          Length = 119

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 5  WGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLP 44
          W   C L ++F+PLLS   + +   PS  L  TLT + LP
Sbjct: 42 WPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLP 81


>gi|239741366 PREDICTED: hypothetical protein XP_002342186 [Homo
          sapiens]
          Length = 119

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 5  WGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLP 44
          W   C L ++F+PLLS   + +   PS  L  TLT + LP
Sbjct: 42 WPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLP 81


>gi|59938780 WD repeat domain 31 isoform 1 [Homo sapiens]
          Length = 367

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 31  SRPLLVTLTWSFLPSHQVISRATAWTFLRWW-----QAASVHTLSQHLKRHCQPSVVPHT 85
           SR ++  L W  +P    I + +    LR W     Q A +    QH++ +C+ SV  H 
Sbjct: 187 SRNVVTHLCW--VPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHK 244

Query: 86  CNPSTLGGRGGQ 97
           C  S   G GG+
Sbjct: 245 C-ISCSNGFGGE 255


>gi|21687048 WD repeat domain 31 isoform 3 [Homo sapiens]
          Length = 366

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 31  SRPLLVTLTWSFLPSHQVISRATAWTFLRWW-----QAASVHTLSQHLKRHCQPSVVPHT 85
           SR ++  L W  +P    I + +    LR W     Q A +    QH++ +C+ SV  H 
Sbjct: 186 SRNVVTHLCW--VPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHK 243

Query: 86  CNPSTLGGRGGQ 97
           C  S   G GG+
Sbjct: 244 C-ISCSNGFGGE 254


>gi|11038659 ADAM metallopeptidase with thrombospondin type 1 motif,
           2 isoform 2 [Homo sapiens]
          Length = 566

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 78  QPSVVPHTCNPSTLGGRG 95
           +P  V H C PSTLGG+G
Sbjct: 545 RPGAVAHACYPSTLGGQG 562


>gi|217035140 zinc finger protein 669 isoform 2 [Homo sapiens]
          Length = 378

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 62  QAASVHTLSQHLKRHCQPSVVPHTC-----NPSTLGGRG 95
           +    +T S HL RH +   +   C     NPSTLGG+G
Sbjct: 336 KCGKAYTRSSHLTRHERSHDIEAGCSDSAYNPSTLGGQG 374


>gi|217035138 zinc finger protein 669 isoform 1 [Homo sapiens]
          Length = 464

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 62  QAASVHTLSQHLKRHCQPSVVPHTC-----NPSTLGGRG 95
           +    +T S HL RH +   +   C     NPSTLGG+G
Sbjct: 422 KCGKAYTRSSHLTRHERSHDIEAGCSDSAYNPSTLGGQG 460


>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 76  HCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPR 115
           H  PSV+ H  + S  GG G     G +  + +T+ A PR
Sbjct: 476 HPAPSVIVHGGSSSGGGGSGTASTGGSQAASVITYTAPPR 515


>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 76  HCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPR 115
           H  PSV+ H  + S  GG G     G +  + +T+ A PR
Sbjct: 476 HPAPSVIVHGGSSSGGGGSGTASTGGSQAASVITYTAPPR 515


>gi|20336212 guanidinoacetate N-methyltransferase isoform b [Homo
           sapiens]
          Length = 269

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 79  PSVVPHTCNPSTLGGRGGQI 98
           P  V    NPST+ GRGGQI
Sbjct: 249 PGAVAQVYNPSTVEGRGGQI 268


>gi|40217812 cell cycle progression 2 protein isoform 1 [Homo
           sapiens]
          Length = 631

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 43  LPSHQVISRATAWTFLRWWQAASVHTLSQHLKRHCQPSVVPHTCN 87
           L S +V   A ++  L+W         +QH+    Q   +PH C+
Sbjct: 327 LTSGEVAHCAKSFALLKWLSLPLFEAFAQHVLNRAQDITLPHLCS 371


>gi|119220562 cytochrome P450, family 4, subfamily F, polypeptide
          3 [Homo sapiens]
          Length = 520

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 16 IPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRWWQAASVHTLSQHLKR 75
          +P LSL S   WP  + P L+ L    + +  +++R  AWT+  +     +    Q  KR
Sbjct: 1  MPQLSLSSLGLWPMAASPWLLLL---LVGASWLLARILAWTYTFYDNCCRLRCFPQPPKR 57

Query: 76 H 76
          +
Sbjct: 58 N 58


>gi|21704279 jagged 2 isoform b precursor [Homo sapiens]
          Length = 1200

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 75  RHCQPSVVPHTCNPSTLGGRGGQIPSGQEC 104
           R+C+ +    T NP   GG   ++PSG EC
Sbjct: 342 RNCEKAEHACTSNPCANGGSCHEVPSGFEC 371


>gi|21704277 jagged 2 isoform a precursor [Homo sapiens]
          Length = 1238

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 75  RHCQPSVVPHTCNPSTLGGRGGQIPSGQEC 104
           R+C+ +    T NP   GG   ++PSG EC
Sbjct: 342 RNCEKAEHACTSNPCANGGSCHEVPSGFEC 371


>gi|91982767 semaphorin 5B isoform 1 [Homo sapiens]
          Length = 1151

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 65   SVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQE 103
            +V+   QH +R  Q S + H   P+ L  +GG  P  ++
Sbjct: 1054 AVYLSCQHCQRQSQESTLVHPATPNHLHYKGGGTPKNEK 1092


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.132    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,296,105
Number of Sequences: 37866
Number of extensions: 230144
Number of successful extensions: 567
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 39
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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