Guide to the Human Genome
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Name: LOC100128895 Sequence: fasta or formatted (117aa) NCBI GI: 169204982
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {117aa} PREDICTED: hypothetical protein
alt mRNA {117aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          6           2
 C cysteine            3.4          4           1
 D aspartate           0.0          0           0
 E glutamate           0.9          1           1
 F phenylalanine       3.4          4           1
 G glycine             6.8          8           2
 H histidine           5.1          6           1
 I isoleucine          2.6          3           1
 K lysine              3.4          4           1
 L leucine            12.8         15           2
 M methionine          1.7          2           1
 N asparagine          2.6          3           1
 P proline             8.5         10           1
 Q glutamine           6.8          8           1
 R arginine            5.1          6           1
 S serine             12.0         14           2
 T threonine           9.4         11           1
 V valine              4.3          5           2
 W tryptophan          5.1          6           2
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128895          1.000   PREDICTED: hypothetical protein 
LOC100128895          1.000   PREDICTED: hypothetical protein 
LOC100292050          0.109   PREDICTED: hypothetical protein XP_002344942 
LOC100290814          0.109   PREDICTED: hypothetical protein XP_002347710 
LOC100287593          0.109   PREDICTED: hypothetical protein XP_002344133 
ZNF429                0.074   zinc finger protein 429 
YIF1B                 0.066   Yip1 interacting factor homolog B isoform 7 
PKP2                  0.052   plakophilin 2 isoform 2b 
FBLIM1                0.039   filamin-binding LIM protein-1 isoform b 
POLR1C                0.039   RNA polymerase I subunit isoform 2 
BIRC5                 0.035   baculoviral IAP repeat-containing protein 5 isoform ...
ZNF714                0.031   zinc finger protein 714 
SEPP1                 0.026   selenoprotein P isoform 2 
LOC100293276          0.022   PREDICTED: similar to hCG1995379 
LOC100291463          0.022   PREDICTED: hypothetical protein XP_002347548 
LOC100286989          0.022   PREDICTED: hypothetical protein XP_002342186 
WDR31                 0.022   WD repeat domain 31 isoform 1 
WDR31                 0.022   WD repeat domain 31 isoform 3 
ADAMTS2               0.022   ADAM metallopeptidase with thrombospondin type 1 mot...
ZNF669                0.013   zinc finger protein 669 isoform 2 
ZNF669                0.013   zinc finger protein 669 isoform 1 
ZBTB4                 0.013   zinc finger and BTB domain containing 4 
ZBTB4                 0.013   zinc finger and BTB domain containing 4 
GAMT                  0.013   guanidinoacetate N-methyltransferase isoform b [Homo...
TBRG4                 0.013   cell cycle progression 2 protein isoform 1 
CYP4F3                0.013   cytochrome P450, family 4, subfamily F, polypeptide...
JAG2                  0.013   jagged 2 isoform b precursor 
JAG2                  0.013   jagged 2 isoform a precursor 
SEMA5B                0.013   semaphorin 5B isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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