Guide to the Human Genome
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Name: LOC100291463 Sequence: fasta or formatted (119aa) NCBI GI: 239747492
Description:

PREDICTED: hypothetical protein XP_002347548

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          5           2
 C cysteine            3.4          4           1
 D aspartate           0.0          0           0
 E glutamate           0.8          1           1
 F phenylalanine       3.4          4           2
 G glycine             9.2         11           1
 H histidine           2.5          3           1
 I isoleucine          3.4          4           2
 K lysine              2.5          3           1
 L leucine            19.3         23           2
 M methionine          1.7          2           1
 N asparagine          0.8          1           1
 P proline            10.9         13           1
 Q glutamine           1.7          2           1
 R arginine            5.0          6           1
 S serine             15.1         18           2
 T threonine           6.7          8           3
 V valine              4.2          5           1
 W tryptophan          3.4          4           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347548 
LOC100293276          1.000   PREDICTED: similar to hCG1995379 
LOC100286989          1.000   PREDICTED: hypothetical protein XP_002342186 
C8orf86               0.031   hypothetical protein LOC389649 
CSPG4                 0.027   chondroitin sulfate proteoglycan 4 
LOC100128895          0.022   PREDICTED: hypothetical protein 
LOC100128895          0.022   PREDICTED: hypothetical protein 
LOC100128895          0.022   PREDICTED: hypothetical protein 
DKFZp761E198          0.013   hypothetical protein LOC91056 
LOC100287907          0.013   PREDICTED: hypothetical protein 
LOC100287907          0.013   PREDICTED: hypothetical protein XP_002343168 
ASB14                 0.013   ankyrin repeat and SOCS box-containing 14 isoform 1...
ASB14                 0.013   ankyrin repeat and SOCS box-containing 14 isoform 2 ...
LOC100134663          0.009   PREDICTED: hypothetical protein, partial 
ALPK1                 0.009   alpha-kinase 1 
ALPK1                 0.009   alpha-kinase 1 
TMC4                  0.004   transmembrane channel-like 4 isoform 2 
TMC4                  0.004   transmembrane channel-like 4 isoform 1 
USP33                 0.004   ubiquitin specific protease 33 isoform 3 
USP33                 0.004   ubiquitin specific protease 33 isoform 1 
USP33                 0.004   ubiquitin specific protease 33 isoform 2 
FLJ43860              0.004   hypothetical protein LOC389690 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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