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Search of human proteins with 169204452
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169204982 PREDICTED: hypothetical protein [Homo sapiens] 254 1e-68
gi|169205503 PREDICTED: hypothetical protein [Homo sapiens] 254 1e-68
gi|169204452 PREDICTED: hypothetical protein [Homo sapiens] 254 1e-68
gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo ... 50 3e-07
gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo ... 50 3e-07
gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo ... 50 3e-07
gi|116256455 zinc finger protein 429 [Homo sapiens] 42 1e-04
gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo s... 40 4e-04
gi|148664226 plakophilin 2 isoform 2b [Homo sapiens] 37 0.003
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 34 0.022
gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens] 34 0.028
gi|59859882 baculoviral IAP repeat-containing protein 5 isoform ... 33 0.037
gi|144953913 zinc finger protein 714 [Homo sapiens] 32 0.082
gi|148277022 selenoprotein P isoform 2 [Homo sapiens] 31 0.24
gi|239752927 PREDICTED: similar to hCG1995379 [Homo sapiens] 30 0.41
gi|239747492 PREDICTED: hypothetical protein XP_002347548 [Homo ... 30 0.41
gi|239741366 PREDICTED: hypothetical protein XP_002342186 [Homo ... 30 0.41
gi|59938780 WD repeat domain 31 isoform 1 [Homo sapiens] 30 0.53
gi|21687048 WD repeat domain 31 isoform 3 [Homo sapiens] 30 0.53
gi|11038659 ADAM metallopeptidase with thrombospondin type 1 mot... 30 0.53
gi|217035140 zinc finger protein 669 isoform 2 [Homo sapiens] 28 1.2
gi|217035138 zinc finger protein 669 isoform 1 [Homo sapiens] 28 1.2
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 28 1.2
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 28 1.2
gi|20336212 guanidinoacetate N-methyltransferase isoform b [Homo... 28 1.6
gi|40217812 cell cycle progression 2 protein isoform 1 [Homo sap... 28 1.6
gi|119220562 cytochrome P450, family 4, subfamily F, polypeptide... 28 2.0
gi|21704279 jagged 2 isoform b precursor [Homo sapiens] 28 2.0
gi|21704277 jagged 2 isoform a precursor [Homo sapiens] 28 2.0
gi|91982767 semaphorin 5B isoform 1 [Homo sapiens] 28 2.0
>gi|169204982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 254 bits (649), Expect = 1e-68
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW 60
MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW
Sbjct: 1 MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW 60
Query: 61 WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY
Sbjct: 61 WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
>gi|169205503 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 254 bits (649), Expect = 1e-68
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW 60
MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW
Sbjct: 1 MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW 60
Query: 61 WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY
Sbjct: 61 WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
>gi|169204452 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 254 bits (649), Expect = 1e-68
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW 60
MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW
Sbjct: 1 MLGQWGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRW 60
Query: 61 WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY
Sbjct: 61 WQAASVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
>gi|239756590 PREDICTED: hypothetical protein XP_002344942 [Homo
sapiens]
Length = 120
Score = 50.4 bits (119), Expect = 3e-07
Identities = 25/36 (69%), Positives = 26/36 (72%)
Query: 82 VPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
V HT NPSTLGGRGG I GQE KTSL M +P LY
Sbjct: 85 VAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
>gi|239751084 PREDICTED: hypothetical protein XP_002347710 [Homo
sapiens]
Length = 120
Score = 50.4 bits (119), Expect = 3e-07
Identities = 25/36 (69%), Positives = 26/36 (72%)
Query: 82 VPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
V HT NPSTLGGRGG I GQE KTSL M +P LY
Sbjct: 85 VAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
>gi|239745573 PREDICTED: hypothetical protein XP_002344133 [Homo
sapiens]
Length = 120
Score = 50.4 bits (119), Expect = 3e-07
Identities = 25/36 (69%), Positives = 26/36 (72%)
Query: 82 VPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPRLY 117
V HT NPSTLGGRGG I GQE KTSL M +P LY
Sbjct: 85 VAHTYNPSTLGGRGGWITRGQEFKTSLANMVEPCLY 120
>gi|116256455 zinc finger protein 429 [Homo sapiens]
Length = 674
Score = 42.0 bits (97), Expect = 1e-04
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Query: 69 LSQHLKRHCQPSVVPHTCNPSTLGGRGGQI 98
L+QH K H + VV H CNPSTLGGRGG+I
Sbjct: 636 LTQHKKIH-RMGVVAHACNPSTLGGRGGRI 664
>gi|224451040 Yip1 interacting factor homolog B isoform 7 [Homo
sapiens]
Length = 291
Score = 40.0 bits (92), Expect = 4e-04
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 79 PSVVPHTCNPSTLGGRGGQIPSGQEC 104
P V H CNPSTLGGRGG+I C
Sbjct: 265 PGAVAHACNPSTLGGRGGRITRSGRC 290
>gi|148664226 plakophilin 2 isoform 2b [Homo sapiens]
Length = 881
Score = 37.4 bits (85), Expect = 0.003
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 67 HTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQI 98
HT++ R+ P V H CNPSTLGG+GG+I
Sbjct: 461 HTVNLR-SRNGWPGAVAHACNPSTLGGQGGRI 491
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 34.3 bits (77), Expect = 0.022
Identities = 14/17 (82%), Positives = 14/17 (82%)
Query: 82 VPHTCNPSTLGGRGGQI 98
V H CNPSTLGGRGG I
Sbjct: 348 VAHACNPSTLGGRGGWI 364
>gi|4759046 RNA polymerase I subunit isoform 2 [Homo sapiens]
Length = 342
Score = 33.9 bits (76), Expect = 0.028
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 80 SVVPHTCNPSTLGGRGGQIPSGQE 103
+ V HTCNPSTLGG+G I +E
Sbjct: 314 AAVAHTCNPSTLGGQGEWITGSRE 337
>gi|59859882 baculoviral IAP repeat-containing protein 5 isoform 3
[Homo sapiens]
Length = 165
Score = 33.5 bits (75), Expect = 0.037
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 79 PSVVPHTCNPSTLGGRGGQIPSGQECKTS 107
P V + CN STLGGRGG+I + K S
Sbjct: 76 PGTVAYACNTSTLGGRGGRITREEHKKHS 104
>gi|144953913 zinc finger protein 714 [Homo sapiens]
Length = 555
Score = 32.3 bits (72), Expect = 0.082
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 68 TLSQHLKRHCQPSVVPHTCNPSTLGGRGGQI 98
TL++H R Q +V H CNP+TL G G QI
Sbjct: 495 TLTKH--RKIQQGMVAHACNPNTLRGLGEQI 523
>gi|148277022 selenoprotein P isoform 2 [Homo sapiens]
Length = 411
Score = 30.8 bits (68), Expect = 0.24
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 82 VPHTCNPSTLGGRGGQI 98
V H CNPSTLGG+G +I
Sbjct: 8 VAHACNPSTLGGQGRRI 24
>gi|239752927 PREDICTED: similar to hCG1995379 [Homo sapiens]
Length = 119
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 5 WGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLP 44
W C L ++F+PLLS + + PS L TLT + LP
Sbjct: 42 WPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLP 81
>gi|239747492 PREDICTED: hypothetical protein XP_002347548 [Homo
sapiens]
Length = 119
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 5 WGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLP 44
W C L ++F+PLLS + + PS L TLT + LP
Sbjct: 42 WPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLP 81
>gi|239741366 PREDICTED: hypothetical protein XP_002342186 [Homo
sapiens]
Length = 119
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 5 WGSACQLGTNFIPLLSLKSSHNWPTPSRPLLVTLTWSFLP 44
W C L ++F+PLLS + + PS L TLT + LP
Sbjct: 42 WPGLCPLFSSFLPLLSRLRASSRKHPSVLLTTTLTLTSLP 81
>gi|59938780 WD repeat domain 31 isoform 1 [Homo sapiens]
Length = 367
Score = 29.6 bits (65), Expect = 0.53
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 31 SRPLLVTLTWSFLPSHQVISRATAWTFLRWW-----QAASVHTLSQHLKRHCQPSVVPHT 85
SR ++ L W +P I + + LR W Q A + QH++ +C+ SV H
Sbjct: 187 SRNVVTHLCW--VPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHK 244
Query: 86 CNPSTLGGRGGQ 97
C S G GG+
Sbjct: 245 C-ISCSNGFGGE 255
>gi|21687048 WD repeat domain 31 isoform 3 [Homo sapiens]
Length = 366
Score = 29.6 bits (65), Expect = 0.53
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 31 SRPLLVTLTWSFLPSHQVISRATAWTFLRWW-----QAASVHTLSQHLKRHCQPSVVPHT 85
SR ++ L W +P I + + LR W Q A + QH++ +C+ SV H
Sbjct: 186 SRNVVTHLCW--VPREPYILQTSEDKTLRLWDSRGLQVAHMFPAKQHIQTYCEVSVDGHK 243
Query: 86 CNPSTLGGRGGQ 97
C S G GG+
Sbjct: 244 C-ISCSNGFGGE 254
>gi|11038659 ADAM metallopeptidase with thrombospondin type 1 motif,
2 isoform 2 [Homo sapiens]
Length = 566
Score = 29.6 bits (65), Expect = 0.53
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 78 QPSVVPHTCNPSTLGGRG 95
+P V H C PSTLGG+G
Sbjct: 545 RPGAVAHACYPSTLGGQG 562
>gi|217035140 zinc finger protein 669 isoform 2 [Homo sapiens]
Length = 378
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 62 QAASVHTLSQHLKRHCQPSVVPHTC-----NPSTLGGRG 95
+ +T S HL RH + + C NPSTLGG+G
Sbjct: 336 KCGKAYTRSSHLTRHERSHDIEAGCSDSAYNPSTLGGQG 374
>gi|217035138 zinc finger protein 669 isoform 1 [Homo sapiens]
Length = 464
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 62 QAASVHTLSQHLKRHCQPSVVPHTC-----NPSTLGGRG 95
+ +T S HL RH + + C NPSTLGG+G
Sbjct: 422 KCGKAYTRSSHLTRHERSHDIEAGCSDSAYNPSTLGGQG 460
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 76 HCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPR 115
H PSV+ H + S GG G G + + +T+ A PR
Sbjct: 476 HPAPSVIVHGGSSSGGGGSGTASTGGSQAASVITYTAPPR 515
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 76 HCQPSVVPHTCNPSTLGGRGGQIPSGQECKTSLTFMAKPR 115
H PSV+ H + S GG G G + + +T+ A PR
Sbjct: 476 HPAPSVIVHGGSSSGGGGSGTASTGGSQAASVITYTAPPR 515
>gi|20336212 guanidinoacetate N-methyltransferase isoform b [Homo
sapiens]
Length = 269
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 79 PSVVPHTCNPSTLGGRGGQI 98
P V NPST+ GRGGQI
Sbjct: 249 PGAVAQVYNPSTVEGRGGQI 268
>gi|40217812 cell cycle progression 2 protein isoform 1 [Homo
sapiens]
Length = 631
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 43 LPSHQVISRATAWTFLRWWQAASVHTLSQHLKRHCQPSVVPHTCN 87
L S +V A ++ L+W +QH+ Q +PH C+
Sbjct: 327 LTSGEVAHCAKSFALLKWLSLPLFEAFAQHVLNRAQDITLPHLCS 371
>gi|119220562 cytochrome P450, family 4, subfamily F, polypeptide
3 [Homo sapiens]
Length = 520
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 16 IPLLSLKSSHNWPTPSRPLLVTLTWSFLPSHQVISRATAWTFLRWWQAASVHTLSQHLKR 75
+P LSL S WP + P L+ L + + +++R AWT+ + + Q KR
Sbjct: 1 MPQLSLSSLGLWPMAASPWLLLL---LVGASWLLARILAWTYTFYDNCCRLRCFPQPPKR 57
Query: 76 H 76
+
Sbjct: 58 N 58
>gi|21704279 jagged 2 isoform b precursor [Homo sapiens]
Length = 1200
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 75 RHCQPSVVPHTCNPSTLGGRGGQIPSGQEC 104
R+C+ + T NP GG ++PSG EC
Sbjct: 342 RNCEKAEHACTSNPCANGGSCHEVPSGFEC 371
>gi|21704277 jagged 2 isoform a precursor [Homo sapiens]
Length = 1238
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 75 RHCQPSVVPHTCNPSTLGGRGGQIPSGQEC 104
R+C+ + T NP GG ++PSG EC
Sbjct: 342 RNCEKAEHACTSNPCANGGSCHEVPSGFEC 371
>gi|91982767 semaphorin 5B isoform 1 [Homo sapiens]
Length = 1151
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 65 SVHTLSQHLKRHCQPSVVPHTCNPSTLGGRGGQIPSGQE 103
+V+ QH +R Q S + H P+ L +GG P ++
Sbjct: 1054 AVYLSCQHCQRQSQESTLVHPATPNHLHYKGGGTPKNEK 1092
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.132 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,296,105
Number of Sequences: 37866
Number of extensions: 230144
Number of successful extensions: 567
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 39
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.