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Search of human proteins with 169181288
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169181288 PREDICTED: hypothetical protein [Homo sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169181288 PREDICTED: hypothetical protein [Homo sapiens] 209 5e-55
gi|169178377 PREDICTED: hypothetical protein [Homo sapiens] 207 2e-54
gi|169179404 PREDICTED: hypothetical protein [Homo sapiens] 207 2e-54
gi|239754297 PREDICTED: hypothetical protein [Homo sapiens] 34 0.028
gi|239748836 PREDICTED: hypothetical protein XP_002346833 [Homo ... 34 0.028
gi|239742863 PREDICTED: hypothetical protein XP_002342665 [Homo ... 34 0.028
gi|5174449 H1 histone family, member X [Homo sapiens] 32 0.082
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 32 0.11
gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens] 31 0.18
gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens] 31 0.18
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ... 31 0.24
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|41152076 steroid-sensitive protein 1 [Homo sapiens] 30 0.31
gi|41152074 steroid-sensitive protein 1 [Homo sapiens] 30 0.31
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 30 0.41
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 30 0.41
gi|150170670 piccolo isoform 2 [Homo sapiens] 30 0.41
gi|150378539 piccolo isoform 1 [Homo sapiens] 30 0.41
gi|169213985 PREDICTED: similar to hCG2036794 [Homo sapiens] 30 0.53
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 30 0.53
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239753758 PREDICTED: hypothetical protein LOC401106 [Homo sap... 29 0.70
gi|169166137 PREDICTED: hypothetical protein LOC401106 [Homo sap... 29 0.70
gi|169165128 PREDICTED: hypothetical protein LOC401106 [Homo sap... 29 0.70
gi|187936955 HHIP-like protein 1 isoform a [Homo sapiens] 29 0.70
gi|40556370 PHD finger protein 15 [Homo sapiens] 29 0.70
gi|4506141 HtrA serine peptidase 1 precursor [Homo sapiens] 29 0.91
gi|239753797 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|239751846 PREDICTED: similar to hCG2036794 [Homo sapiens] 29 0.91
>gi|169181288 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 209 bits (531), Expect = 5e-55
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MAFWLQRWLAAAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAA 60
MAFWLQRWLAAAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAA
Sbjct: 1 MAFWLQRWLAAAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAA 60
Query: 61 DDSVTSLPLTNTAKGLGLGTQKGAAEPNRVSPASFLCAFKTPV 103
DDSVTSLPLTNTAKGLGLGTQKGAAEPNRVSPASFLCAFKTPV
Sbjct: 61 DDSVTSLPLTNTAKGLGLGTQKGAAEPNRVSPASFLCAFKTPV 103
>gi|169178377 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 207 bits (526), Expect = 2e-54
Identities = 102/103 (99%), Positives = 103/103 (100%)
Query: 1 MAFWLQRWLAAAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAA 60
MAFWLQRWLAAAASPAP+ARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAA
Sbjct: 1 MAFWLQRWLAAAASPAPNARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAA 60
Query: 61 DDSVTSLPLTNTAKGLGLGTQKGAAEPNRVSPASFLCAFKTPV 103
DDSVTSLPLTNTAKGLGLGTQKGAAEPNRVSPASFLCAFKTPV
Sbjct: 61 DDSVTSLPLTNTAKGLGLGTQKGAAEPNRVSPASFLCAFKTPV 103
>gi|169179404 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 207 bits (526), Expect = 2e-54
Identities = 102/103 (99%), Positives = 103/103 (100%)
Query: 1 MAFWLQRWLAAAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAA 60
MAFWLQRWLAAAASPAP+ARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAA
Sbjct: 1 MAFWLQRWLAAAASPAPNARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAA 60
Query: 61 DDSVTSLPLTNTAKGLGLGTQKGAAEPNRVSPASFLCAFKTPV 103
DDSVTSLPLTNTAKGLGLGTQKGAAEPNRVSPASFLCAFKTPV
Sbjct: 61 DDSVTSLPLTNTAKGLGLGTQKGAAEPNRVSPASFLCAFKTPV 103
>gi|239754297 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 33.9 bits (76), Expect = 0.028
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 6 QRWLAAAASPAPDARVRPARSARMAGERPSGGRPARL-LKEPRRGIQRGHRAAGAADDSV 64
+RW A PA + PA +AR AG P GRP R ++P RA G
Sbjct: 71 RRWPCGA--PACTRTLSPALAARPAGRGPCAGRPRRCGCRDP-----ADSRARGCCQPQR 123
Query: 65 TSLPLTNTAKGLGLGTQKGAAE 86
+PL L GT+ GA +
Sbjct: 124 LDVPLRLGQAPLRAGTRSGAQD 145
>gi|239748836 PREDICTED: hypothetical protein XP_002346833 [Homo
sapiens]
Length = 175
Score = 33.9 bits (76), Expect = 0.028
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 6 QRWLAAAASPAPDARVRPARSARMAGERPSGGRPARL-LKEPRRGIQRGHRAAGAADDSV 64
+RW A PA + PA +AR AG P GRP R ++P RA G
Sbjct: 71 RRWPCGA--PACTRTLSPALAARPAGRGPCAGRPRRCGCRDP-----ADSRARGCCQPQR 123
Query: 65 TSLPLTNTAKGLGLGTQKGAAE 86
+PL L GT+ GA +
Sbjct: 124 LDVPLRLGQAPLRAGTRSGAQD 145
>gi|239742863 PREDICTED: hypothetical protein XP_002342665 [Homo
sapiens]
Length = 175
Score = 33.9 bits (76), Expect = 0.028
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 6 QRWLAAAASPAPDARVRPARSARMAGERPSGGRPARL-LKEPRRGIQRGHRAAGAADDSV 64
+RW A PA + PA +AR AG P GRP R ++P RA G
Sbjct: 71 RRWPCGA--PACTRTLSPALAARPAGRGPCAGRPRRCGCRDP-----ADSRARGCCQPQR 123
Query: 65 TSLPLTNTAKGLGLGTQKGAAE 86
+PL L GT+ GA +
Sbjct: 124 LDVPLRLGQAPLRAGTRSGAQD 145
>gi|5174449 H1 histone family, member X [Homo sapiens]
Length = 213
Score = 32.3 bits (72), Expect = 0.082
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 10 AAAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAADDSVTSLPL 69
AAA +PAP A + AG R + +PAR K +R ++G AGA D
Sbjct: 132 AAATAPAPTAHKAKKAAPGAAGSRRADKKPARGQKPEQRSHKKG---AGAKKDKGGKAKK 188
Query: 70 TNTAKGLGLGTQKGAAEPN 88
T A G + K AA+P+
Sbjct: 189 TAAAGGKKV---KKAAKPS 204
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 32.0 bits (71), Expect = 0.11
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 11 AAASPAPDARVRPA---RSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAADDSVTSL 67
AAASP P P S R P GG PA L P +R RA+ S SL
Sbjct: 768 AAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPLSASQPSL 827
Query: 68 PLTNTAKGLGLGTQKGAAEPNRVSP 92
P + A G T+ ++ R+ P
Sbjct: 828 P--HGAPGPAASTRPASSSTPRLGP 850
>gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]
Length = 1113
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 12 AASPAPDARVRPARSARMAGERPSGGRPARLLKEP--RRGIQRGHRAAGAADDSVTSLPL 69
AA P +VRP +R+ P+ G ARL + P ++ + H GAA + +PL
Sbjct: 842 AAEPGKLEQVRPQELSRVQELAPASGEKARLSEAPGGKKSLSMLHYIRGAAPKDI-PVPL 900
Query: 70 TNTAKG 75
+++ G
Sbjct: 901 SHSTNG 906
>gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]
Length = 1217
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 12 AASPAPDARVRPARSARMAGERPSGGRPARLLKEP--RRGIQRGHRAAGAADDSVTSLPL 69
AA P +VRP +R+ P+ G ARL + P ++ + H GAA + +PL
Sbjct: 946 AAEPGKLEQVRPQELSRVQELAPASGEKARLSEAPGGKKSLSMLHYIRGAAPKDI-PVPL 1004
Query: 70 TNTAKG 75
+++ G
Sbjct: 1005 SHSTNG 1010
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 11 AAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAADDSVTSLP 68
A P P + RP R G RP G RPAR K P QR + AA S TS P
Sbjct: 196 ARPRPGPTSSRRPW--GRAGGLRPRGKRPARGKKRP--SSQRRCSSPSAARASATSAP 249
>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
Length = 725
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 11 AAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAADDSVTSLP 68
A P P + RP R G RP G RPAR K P QR + AA S TS P
Sbjct: 196 ARPRPGPTSSRRPW--GRAGGLRPRGKRPARGKKRP--SSQRRCSSPSAARASATSAP 249
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 30.8 bits (68), Expect = 0.24
Identities = 34/111 (30%), Positives = 39/111 (35%), Gaps = 23/111 (20%)
Query: 10 AAAASPAPDARVRPARSARMAGERPSGGRPAR--------------LLKEPRR--GIQRG 53
AA A P+P A PAR A + GE P+ GR R L P R G+ RG
Sbjct: 59 AAGAVPSPPAAAHPARPA-LRGETPAPGRRGRATTRGEVQPSVRPPLSHRPLRGGGMGRG 117
Query: 54 HRAAGAADDSVTSLP------LTNTAKGLGLGTQKGAAEPNRVSPASFLCA 98
G + LP L G G A R SP F A
Sbjct: 118 RPGKGPPPNPSRRLPPAPPGGRRTWLSALATGPAAGGAGRRRRSPPVFRAA 168
>gi|41152076 steroid-sensitive protein 1 [Homo sapiens]
Length = 950
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 5 LQRWLAAAASPAPDARVRPARSARMAG-ERPSGGRPARLLKEP--RRGIQR 52
L WL + P P A +R + R P RPAR L+ RGI+R
Sbjct: 13 LAMWLVCGSEPHPHATIRGSHGGRKVPLVSPDSSRPARFLRHTGRSRGIER 63
>gi|41152074 steroid-sensitive protein 1 [Homo sapiens]
Length = 950
Score = 30.4 bits (67), Expect = 0.31
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 5 LQRWLAAAASPAPDARVRPARSARMAG-ERPSGGRPARLLKEP--RRGIQR 52
L WL + P P A +R + R P RPAR L+ RGI+R
Sbjct: 13 LAMWLVCGSEPHPHATIRGSHGGRKVPLVSPDSSRPARFLRHTGRSRGIER 63
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 15 PAPDARVRPARSARMAGERPSGGRPARLLKEPRRGI---QRGHRAAGAADDSVTSLPLTN 71
P P R +P+ A +AG P+G AR PR G+ + H A A + S T+
Sbjct: 1122 PPPSGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGRLTPESQSKTS 1181
Query: 72 -TAKG 75
T+KG
Sbjct: 1182 ETSKG 1186
>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
sapiens]
Length = 2113
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 6 QRWLAAAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAADDSVT 65
QR LA A PA A P + PS PA + PR G H G + DS+
Sbjct: 2031 QRTLAMPAPPAGTAPPAPGPTPAEPPTAPSAAPPAPSTEPPRAG--GPHTKMGGSRDSL- 2087
Query: 66 SLPLTNTAKGLGLGTQKGA 84
L + G+G ++GA
Sbjct: 2088 ---LEMSTSGVGRSQKQGA 2103
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 14 SPAPDARVRPARSARMAGERPSGGRPA---RLLKEPRRGIQRGHRAAGAADDSVTSLPLT 70
SP PDA+ P S G RP+ G+ + +P+ +R G+ D+ S P T
Sbjct: 863 SPKPDAKPMPKGSPTPPGPRPTAGQTVPTPQQSPKPQEQSRRFSLNLGSITDAPKSQPTT 922
Query: 71 N----TAKGLGLGTQKGAAEPNRVSPA 93
T K G G + N +S A
Sbjct: 923 PQETVTGKLFGFGASIFSQASNLISTA 949
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 30.0 bits (66), Expect = 0.41
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 14 SPAPDARVRPARSARMAGERPSGGRPA---RLLKEPRRGIQRGHRAAGAADDSVTSLPLT 70
SP PDA+ P S G RP+ G+ + +P+ +R G+ D+ S P T
Sbjct: 863 SPKPDAKPMPKGSPTPPGPRPTAGQTVPTPQQSPKPQEQSRRFSLNLGSITDAPKSQPTT 922
Query: 71 N----TAKGLGLGTQKGAAEPNRVSPA 93
T K G G + N +S A
Sbjct: 923 PQETVTGKLFGFGASIFSQASNLISTA 949
>gi|169213985 PREDICTED: similar to hCG2036794 [Homo sapiens]
Length = 518
Score = 29.6 bits (65), Expect = 0.53
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 9 LAAAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAADDSVTSLP 68
L A + P P SAR+AG GRP++L R QR R G V ++
Sbjct: 332 LKAPQNSGPKESNAPPPSARIAGPPALPGRPSQLATATLRAPQRHSRGEG-----VNTII 386
Query: 69 LTNTAKGLG---LGTQKGAA 85
+ K G +G +GAA
Sbjct: 387 VVERVKETGVTLVGRPRGAA 406
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 29.6 bits (65), Expect = 0.53
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 10 AAAASPAPDARVRPARSARMA------GERPSGGRPARLLKEPRR---------GIQRGH 54
AAAA+P P AR + + S R A G R +GG R + RR +RG
Sbjct: 349 AAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGR 408
Query: 55 RAAGAADDSVTSLPLTNTAKGLGLGTQKGAAEP 87
R A +S L+ G+ +GA P
Sbjct: 409 RRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGP 441
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 29.3 bits (64), Expect = 0.70
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 6 QRWLAAAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAADDSVT 65
Q W AA + + R + A AG + GGR ++PRR RG +AA
Sbjct: 87 QHWQKAAGAGGAENRGGGEQKAAAAGTKSLGGRG----RKPRR---RGQKAAATGSKKPR 139
Query: 66 SLPLTNTA---KGLGLGTQKGAA 85
+ A K G G QK AA
Sbjct: 140 WRAQKSAAAGSKNRGAGAQKAAA 162
>gi|239753758 PREDICTED: hypothetical protein LOC401106 [Homo
sapiens]
Length = 297
Score = 29.3 bits (64), Expect = 0.70
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 2 AFWLQRWLAAAASPAP------DARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHR 55
AF W A ASPAP DA++RP ++ R P R R G R
Sbjct: 69 AFAPTAWAPALASPAPDTPRPRDAQLRPEKAGRDLARDVENPPPLRGGARSRCG---ESR 125
Query: 56 AAGAADDSVTSLPLTNTAKGLGLGTQKGAAEPNRVSPA 93
AG + + LP + T + A E R P+
Sbjct: 126 QAGGGARAGSGLPRRMPRPPIAFATLERAKERKRQPPS 163
>gi|169166137 PREDICTED: hypothetical protein LOC401106 [Homo
sapiens]
Length = 297
Score = 29.3 bits (64), Expect = 0.70
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 2 AFWLQRWLAAAASPAP------DARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHR 55
AF W A ASPAP DA++RP ++ R P R R G R
Sbjct: 69 AFAPTAWAPALASPAPDTPRPRDAQLRPEKAGRDLARDVENPPPLRGGARSRCG---ESR 125
Query: 56 AAGAADDSVTSLPLTNTAKGLGLGTQKGAAEPNRVSPA 93
AG + + LP + T + A E R P+
Sbjct: 126 QAGGGARAGSGLPRRMPRPPIAFATLERAKERKRQPPS 163
>gi|169165128 PREDICTED: hypothetical protein LOC401106 [Homo
sapiens]
Length = 297
Score = 29.3 bits (64), Expect = 0.70
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 2 AFWLQRWLAAAASPAP------DARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHR 55
AF W A ASPAP DA++RP ++ R P R R G R
Sbjct: 69 AFAPTAWAPALASPAPDTPRPRDAQLRPEKAGRDLARDVENPPPLRGGARSRCG---ESR 125
Query: 56 AAGAADDSVTSLPLTNTAKGLGLGTQKGAAEPNRVSPA 93
AG + + LP + T + A E R P+
Sbjct: 126 QAGGGARAGSGLPRRMPRPPIAFATLERAKERKRQPPS 163
>gi|187936955 HHIP-like protein 1 isoform a [Homo sapiens]
Length = 782
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 6 QRWLAAAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGH----RAAGAAD 61
+R AA PAP R PAR + G R GGR L R + G R AG +
Sbjct: 626 RRGRPTAAPPAPTPR--PARPTQQPGSRRGGGRRRGRLNSASRAFRDGEVRLVRPAGLSS 683
Query: 62 DS 63
S
Sbjct: 684 GS 685
>gi|40556370 PHD finger protein 15 [Homo sapiens]
Length = 790
Score = 29.3 bits (64), Expect = 0.70
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 12 AASPAPDARVRPARSA----RMAGERPSGGR--PARLLKEPRRGIQRGHRAAGAADDSVT 65
AASP P R+RP R + R+ G RP G P+ + + P+ + G D
Sbjct: 699 AASPKPLGRLRPPRESKVTRRLPGARPDAGMGPPSAVAERPKVSLHFDTETDGYFSDGEM 758
Query: 66 SLPLTNTAKGLGLGTQKGAAE 86
S G G Q+G E
Sbjct: 759 SDSDVEAEDG---GVQRGPRE 776
>gi|4506141 HtrA serine peptidase 1 precursor [Homo sapiens]
Length = 480
Score = 28.9 bits (63), Expect = 0.91
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 9 LAAAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAADDSVTSLP 68
L A+PA R RSA +A P PAR +P H G A D+
Sbjct: 13 LLLLAAPASAQLSRAGRSAPLAAGCPDRCEPARCPPQPE------HCEGGRARDACGCCE 66
Query: 69 LTNTAKGLGLGTQKG 83
+ +G G Q+G
Sbjct: 67 VCGAPEGAACGLQEG 81
>gi|239753797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 864
Score = 28.9 bits (63), Expect = 0.91
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 12 AASPAPDA---------RVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAADD 62
AA PAP A R+RP+ S+ + PS RP+ PR G+ + AG +
Sbjct: 138 AAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFL-PRLGV-AACQGAGEVEQ 195
Query: 63 SVTSLPLTNTAKGLGLGTQKGAAEPNRVSPASFLC 97
S A G G G + A ++SP+ + C
Sbjct: 196 SKPG------AVGPGGGGRGQAGPYPKLSPSDYSC 224
>gi|239751846 PREDICTED: similar to hCG2036794 [Homo sapiens]
Length = 518
Score = 28.9 bits (63), Expect = 0.91
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 9 LAAAASPAPDARVRPARSARMAGERPSGGRPARLLKEPRRGIQRGHRAAGAADDSVTSLP 68
L A + P P SAR+AG GRP++L R QR R G V ++
Sbjct: 332 LKAPQNSGPKESNVPPPSARIAGPPALPGRPSQLAPATLRAPQRHSRGEG-----VNTII 386
Query: 69 LTNTAKGLG---LGTQKGAA 85
+ K G +G +GAA
Sbjct: 387 VVERVKETGVTLVGRPRGAA 406
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.130 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,399,634
Number of Sequences: 37866
Number of extensions: 197548
Number of successful extensions: 1195
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 121
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.