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Search of human proteins with 169178954
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169178954 PREDICTED: hypothetical protein [Homo sapiens]
(219 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169178954 PREDICTED: hypothetical protein [Homo sapiens] 464 e-131
gi|169180010 PREDICTED: hypothetical protein [Homo sapiens] 463 e-131
gi|169176365 PREDICTED: hypothetical protein [Homo sapiens] 463 e-131
gi|113420243 PREDICTED: hypothetical protein LOC377711 isoform 5... 33 0.25
gi|150010654 HEAT repeat containing 7A isoform 1 [Homo sapiens] 33 0.25
gi|148539890 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetyl... 32 0.32
gi|148539888 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetyl... 32 0.32
gi|239750735 PREDICTED: hypothetical protein XP_002347519 [Homo ... 29 3.6
gi|239741542 PREDICTED: doublecortin domain-containing protein E... 28 4.7
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 28 4.7
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 28 4.7
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 28 4.7
gi|239750235 PREDICTED: hypothetical protein [Homo sapiens] 28 6.1
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ... 28 6.1
gi|50345877 arginyltransferase 1 isoform 1 [Homo sapiens] 28 6.1
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens] 28 6.1
gi|148922920 DENN/MADD domain containing 4B [Homo sapiens] 28 6.1
gi|239756362 PREDICTED: hypothetical protein [Homo sapiens] 28 8.0
gi|239750887 PREDICTED: hypothetical protein [Homo sapiens] 28 8.0
gi|239745250 PREDICTED: hypothetical protein [Homo sapiens] 28 8.0
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 28 8.0
gi|188536036 cytochrome b reductase 1 isoform 1 [Homo sapiens] 28 8.0
>gi|169178954 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 464 bits (1195), Expect = e-131
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MRPRNWLEIPRNCAKYMQLHLGIHESMTSRAQPPPPHLPFLLLPCWPQTAMHGCMKEDLN 60
MRPRNWLEIPRNCAKYMQLHLGIHESMTSRAQPPPPHLPFLLLPCWPQTAMHGCMKEDLN
Sbjct: 1 MRPRNWLEIPRNCAKYMQLHLGIHESMTSRAQPPPPHLPFLLLPCWPQTAMHGCMKEDLN 60
Query: 61 LDLFYPPLPFFSPLFCLHLLLSLSSPAGFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSI 120
LDLFYPPLPFFSPLFCLHLLLSLSSPAGFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSI
Sbjct: 61 LDLFYPPLPFFSPLFCLHLLLSLSSPAGFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSI 120
Query: 121 QDHPPWLMPQPANSQILHVCLTSYLAVKPKPREESQGAQHRANLRVYRDADPFLINVSIC 180
QDHPPWLMPQPANSQILHVCLTSYLAVKPKPREESQGAQHRANLRVYRDADPFLINVSIC
Sbjct: 121 QDHPPWLMPQPANSQILHVCLTSYLAVKPKPREESQGAQHRANLRVYRDADPFLINVSIC 180
Query: 181 VYVYTYAIHIHKSWYKVAIFLAAIKCASFKTVHLLLANL 219
VYVYTYAIHIHKSWYKVAIFLAAIKCASFKTVHLLLANL
Sbjct: 181 VYVYTYAIHIHKSWYKVAIFLAAIKCASFKTVHLLLANL 219
>gi|169180010 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 463 bits (1191), Expect = e-131
Identities = 218/219 (99%), Positives = 218/219 (99%)
Query: 1 MRPRNWLEIPRNCAKYMQLHLGIHESMTSRAQPPPPHLPFLLLPCWPQTAMHGCMKEDLN 60
MRPRNWLEIPRNCAKYMQLHLGIHESMTSRAQPPPPHLPFLLLPCWPQTAMHGCMKEDLN
Sbjct: 1 MRPRNWLEIPRNCAKYMQLHLGIHESMTSRAQPPPPHLPFLLLPCWPQTAMHGCMKEDLN 60
Query: 61 LDLFYPPLPFFSPLFCLHLLLSLSSPAGFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSI 120
LDLFYPPLPFFSPLFCLHLLLSLSSP GFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSI
Sbjct: 61 LDLFYPPLPFFSPLFCLHLLLSLSSPTGFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSI 120
Query: 121 QDHPPWLMPQPANSQILHVCLTSYLAVKPKPREESQGAQHRANLRVYRDADPFLINVSIC 180
QDHPPWLMPQPANSQILHVCLTSYLAVKPKPREESQGAQHRANLRVYRDADPFLINVSIC
Sbjct: 121 QDHPPWLMPQPANSQILHVCLTSYLAVKPKPREESQGAQHRANLRVYRDADPFLINVSIC 180
Query: 181 VYVYTYAIHIHKSWYKVAIFLAAIKCASFKTVHLLLANL 219
VYVYTYAIHIHKSWYKVAIFLAAIKCASFKTVHLLLANL
Sbjct: 181 VYVYTYAIHIHKSWYKVAIFLAAIKCASFKTVHLLLANL 219
>gi|169176365 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 463 bits (1191), Expect = e-131
Identities = 218/219 (99%), Positives = 218/219 (99%)
Query: 1 MRPRNWLEIPRNCAKYMQLHLGIHESMTSRAQPPPPHLPFLLLPCWPQTAMHGCMKEDLN 60
MRPRNWLEIPRNCAKYMQLHLGIHESMTSRAQPPPPHLPFLLLPCWPQTAMHGCMKEDLN
Sbjct: 1 MRPRNWLEIPRNCAKYMQLHLGIHESMTSRAQPPPPHLPFLLLPCWPQTAMHGCMKEDLN 60
Query: 61 LDLFYPPLPFFSPLFCLHLLLSLSSPAGFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSI 120
LDLFYPPLPFFSPLFCLHLLLSLSSP GFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSI
Sbjct: 61 LDLFYPPLPFFSPLFCLHLLLSLSSPTGFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSI 120
Query: 121 QDHPPWLMPQPANSQILHVCLTSYLAVKPKPREESQGAQHRANLRVYRDADPFLINVSIC 180
QDHPPWLMPQPANSQILHVCLTSYLAVKPKPREESQGAQHRANLRVYRDADPFLINVSIC
Sbjct: 121 QDHPPWLMPQPANSQILHVCLTSYLAVKPKPREESQGAQHRANLRVYRDADPFLINVSIC 180
Query: 181 VYVYTYAIHIHKSWYKVAIFLAAIKCASFKTVHLLLANL 219
VYVYTYAIHIHKSWYKVAIFLAAIKCASFKTVHLLLANL
Sbjct: 181 VYVYTYAIHIHKSWYKVAIFLAAIKCASFKTVHLLLANL 219
>gi|113420243 PREDICTED: hypothetical protein LOC377711 isoform 5
[Homo sapiens]
Length = 1218
Score = 32.7 bits (73), Expect = 0.25
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 128 MPQPANSQILHVCLTSYLAVKPKPREESQGAQHRANLRVYRDADPFLINV 177
+ + A + ++H CL S +A+ P+P+EE G Q L + L ++
Sbjct: 435 LDEQARADVIHGCLHSIMALLPEPKEEDGGCQKSLYLETLHALEDLLTSL 484
>gi|150010654 HEAT repeat containing 7A isoform 1 [Homo sapiens]
Length = 1641
Score = 32.7 bits (73), Expect = 0.25
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 128 MPQPANSQILHVCLTSYLAVKPKPREESQGAQHRANLRVYRDADPFLINV 177
+ + A + ++H CL S +A+ P+P+EE G Q L + L ++
Sbjct: 858 LDEQARADVIHGCLHSIMALLPEPKEEDGGCQKSLYLETLHALEDLLTSL 907
>gi|148539890 mannosyl (beta-1,4-)-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase [Homo sapiens]
Length = 533
Score = 32.3 bits (72), Expect = 0.32
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 74 LFCLHLLLSLSSPAGFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSIQDHP--PWLMPQP 131
+FC+ L +S F +S+ FP+ L S P LV +S+ + P P P+P
Sbjct: 11 MFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLV------SSFFWNNAPVTPQASPEP 64
Query: 132 ANSQILHVCLTSYL-AVKPKPREESQGAQHRANLRVYRDADPFLI 175
+L L S+ ++P P ++ HR +L + D + +
Sbjct: 65 GGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFV 109
>gi|148539888 mannosyl (beta-1,4-)-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase [Homo sapiens]
Length = 533
Score = 32.3 bits (72), Expect = 0.32
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 74 LFCLHLLLSLSSPAGFSVISHSGFPQSLWSSCPVLVLFVLDLTSYSIQDHP--PWLMPQP 131
+FC+ L +S F +S+ FP+ L S P LV +S+ + P P P+P
Sbjct: 11 MFCMAGLCLISFLHFFKTLSYVTFPRELASLSPNLV------SSFFWNNAPVTPQASPEP 64
Query: 132 ANSQILHVCLTSYL-AVKPKPREESQGAQHRANLRVYRDADPFLI 175
+L L S+ ++P P ++ HR +L + D + +
Sbjct: 65 GGPDLLRTPLYSHSPLLQPLPPSKAAEELHRVDLVLPEDTTEYFV 109
>gi|239750735 PREDICTED: hypothetical protein XP_002347519 [Homo
sapiens]
Length = 426
Score = 28.9 bits (63), Expect = 3.6
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 103 SSCPVL-VLFVLDLTSYSIQDH----PPWLMPQPANSQILHVCLTSYLAVKPKPREES 155
+SC +L F + SYSI D PPW+ P+ S ++ TS+L +P P S
Sbjct: 368 ASCSMLDASFSIPHNSYSILDTSCVTPPWVFSLPSPSILIPFPATSHLHNRPCPAPPS 425
>gi|239741542 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 510
Score = 28.5 bits (62), Expect = 4.7
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 149 PKPREESQGA-----QHRANLRVYRDADPFLINVSICVYVYTYAIHIHKSWYKVAI 199
P P +E+QGA +H L V D + C + + Y HIHK W V +
Sbjct: 447 PTPSKETQGALDVKEEHNVQLEVPVDQAESSCDKHCC-HNFAYNKHIHKFWLPVIL 501
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 28.5 bits (62), Expect = 4.7
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 31 AQPPPPHLPFLLLPCWPQTAMHGCMKEDLNLDLFYPPLPFFSPLFC--------LHLLLS 82
A PPPP LP + LP +A L+ PLP SP + L+S
Sbjct: 782 ATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMS 841
Query: 83 LSSP-------AGFSVISHSGFPQSLWSSCP 106
+SP + S S S F S SS P
Sbjct: 842 AASPGPPTLSSSSSSSSSSSSFSSSSSSSSP 872
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 28.5 bits (62), Expect = 4.7
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 31 AQPPPPHLPFLLLPCWPQTAMHGCMKEDLNLDLFYPPLPFFSPLFC--------LHLLLS 82
A PPPP LP + LP +A L+ PLP SP + L+S
Sbjct: 983 ATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMS 1042
Query: 83 LSSP-------AGFSVISHSGFPQSLWSSCP 106
+SP + S S S F S SS P
Sbjct: 1043 AASPGPPTLSSSSSSSSSSSSFSSSSSSSSP 1073
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 28.5 bits (62), Expect = 4.7
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 31 AQPPPPHLPFLLLPCWPQTAMHGCMKEDLNLDLFYPPLPFFSPLFC--------LHLLLS 82
A PPPP LP + LP +A L+ PLP SP + L+S
Sbjct: 983 ATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPSPSPIPPVEPLMS 1042
Query: 83 LSSP-------AGFSVISHSGFPQSLWSSCP 106
+SP + S S S F S SS P
Sbjct: 1043 AASPGPPTLSSSSSSSSSSSSFSSSSSSSSP 1073
>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 28.1 bits (61), Expect = 6.1
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 68 LPFFSPLFCLHLLLSLSSPAGFSVISHSGFPQSLWSSCPV 107
LP F PLF LL SSP+ S S+S S SS P+
Sbjct: 160 LPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPL 199
>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
sapiens]
Length = 257
Score = 28.1 bits (61), Expect = 6.1
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 68 LPFFSPLFCLHLLLSLSSPAGFSVISHSGFPQSLWSSCPV 107
LP F PLF LL SSP+ S S+S S SS P+
Sbjct: 160 LPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSSPL 199
>gi|50345877 arginyltransferase 1 isoform 1 [Homo sapiens]
Length = 518
Score = 28.1 bits (61), Expect = 6.1
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 22/90 (24%)
Query: 114 DLTSYSIQDHPPWLMPQPANSQILHVCLTSYLAVKPKPREE------SQGAQHRANLRVY 167
+L + Q HPP L P A S +PK E+ + A H+ +RV
Sbjct: 228 ELEGFQAQGHPPSLFPPKAKSN------------QPKSLEDLIFESLPENASHKLEVRVV 275
Query: 168 RDADP---FLINVSICVYVY-TYAIHIHKS 193
R + P F + VY Y + IHK+
Sbjct: 276 RSSPPSSQFKATLLESYQVYKRYQMVIHKN 305
>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
Length = 1302
Score = 28.1 bits (61), Expect = 6.1
Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 39 PFLLLPCWPQTAMHGCMKEDLNLDLFYPPLPFFSPLFCLHLLLSLSSPAGFSVISHSGFP 98
PF L Q D NL L P SP+FC SS + S + P
Sbjct: 221 PFASLTATSQPIAAAARSPDRNLLLNTGSNPGTSPMFCSVASFGASSLSSLYESSPAPTP 280
Query: 99 QSLWSSCPVL 108
S WSS PV+
Sbjct: 281 -SFWSSVPVM 289
>gi|148922920 DENN/MADD domain containing 4B [Homo sapiens]
Length = 1496
Score = 28.1 bits (61), Expect = 6.1
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 17/83 (20%)
Query: 70 FFSPLFCLHLLLSLSSPAGFSVISHSGFPQS--------LW--------SSCPVLVLFVL 113
+ SPL L SL G V++ P + LW S P LVL
Sbjct: 1266 YLSPLVLRKELESLVENEGSEVLALPELPSAHPIIFWNLLWYFQRLRLPSILPGLVLASC 1325
Query: 114 DLTSYSIQDHPPWLMPQPANSQI 136
D S+S Q PWL P PA+ Q+
Sbjct: 1326 DGPSHS-QAPSPWLTPDPASVQV 1347
>gi|239756362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 27.7 bits (60), Expect = 8.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 150 KPREESQGAQHRANLRVYRDADPFLINV 177
+PRE S+G Q AN D D L+++
Sbjct: 78 RPRERSRGQQETANAEAQSDQDTVLVHI 105
>gi|239750887 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 27.7 bits (60), Expect = 8.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 150 KPREESQGAQHRANLRVYRDADPFLINV 177
+PRE S+G Q AN D D L+++
Sbjct: 78 RPRERSRGQQETANAEAQSDQDTVLVHI 105
>gi|239745250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 27.7 bits (60), Expect = 8.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 150 KPREESQGAQHRANLRVYRDADPFLINV 177
+PRE S+G Q AN D D L+++
Sbjct: 101 RPRERSRGQQETANAEAQSDQDTVLVHI 128
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 27.7 bits (60), Expect = 8.0
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 18 QLHLGIHESMTSRAQPP-PPH-LPFLLLPCWPQTAMHGCMKEDLNLDLFYPPLPFFSPLF 75
+L G E AQ P PPH +P WP+T H D +L P L F + F
Sbjct: 2109 ELEKGAREQPEKEAQSPSPPHPIPMGSPTLWPETEAHVSPPLDSHLGPARPSLDFPASAF 2168
>gi|188536036 cytochrome b reductase 1 isoform 1 [Homo sapiens]
Length = 286
Score = 27.7 bits (60), Expect = 8.0
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 79 LLLSLSSPAGFSVISHSGFP-QSLWSSCPVLVLFVLDLTSYSIQDHPPWLMPQPANSQIL 137
L+ SL PA +S FP + ++ + L++ V + I P W P+ NS IL
Sbjct: 182 LIFSLRDPA------YSTFPPEGVFVNTLGLLILVFGALIFWIVTRPQWKRPKEPNSTIL 235
Query: 138 H 138
H
Sbjct: 236 H 236
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.139 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,514,839
Number of Sequences: 37866
Number of extensions: 543283
Number of successful extensions: 1884
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1872
Number of HSP's gapped (non-prelim): 24
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.