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Search of human proteins with 169176343
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169176343 PREDICTED: hypothetical protein [Homo sapiens]
(62 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169178932 PREDICTED: hypothetical protein [Homo sapiens] 137 2e-33
gi|169176343 PREDICTED: hypothetical protein [Homo sapiens] 137 2e-33
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.004
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.004
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.004
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 37 0.004
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 37 0.004
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 36 0.008
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 34 0.022
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 34 0.022
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 34 0.022
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 34 0.022
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 34 0.022
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 33 0.038
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 33 0.038
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 33 0.038
gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens] 33 0.038
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 33 0.049
gi|21070997 stromal interaction molecule 1 precursor [Homo sapiens] 33 0.064
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 32 0.084
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 32 0.084
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 32 0.084
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 32 0.084
gi|11321565 matrilin 3 precursor [Homo sapiens] 32 0.11
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 32 0.14
gi|116006967 neuregulin 1 isoform GGF2 [Homo sapiens] 31 0.19
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 31 0.19
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 31 0.19
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 31 0.24
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a... 31 0.24
>gi|169178932 PREDICTED: hypothetical protein [Homo sapiens]
Length = 62
Score = 137 bits (344), Expect = 2e-33
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYPLLS 60
MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYPLLS
Sbjct: 1 MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYPLLS 60
Query: 61 SG 62
SG
Sbjct: 61 SG 62
>gi|169176343 PREDICTED: hypothetical protein [Homo sapiens]
Length = 62
Score = 137 bits (344), Expect = 2e-33
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 1 MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYPLLS 60
MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYPLLS
Sbjct: 1 MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYPLLS 60
Query: 61 SG 62
SG
Sbjct: 61 SG 62
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.6 bits (83), Expect = 0.004
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1 MRRSPASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSGEP 42
M P PP G P GL P R P G PPG P P G G P
Sbjct: 189 MAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPP 231
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.6 bits (83), Expect = 0.004
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1 MRRSPASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSGEP 42
M P PP G P GL P R P G PPG P P G G P
Sbjct: 189 MAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPP 231
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.6 bits (83), Expect = 0.004
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1 MRRSPASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSGEP 42
M P PP G P GL P R P G PPG P P G G P
Sbjct: 189 MAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPP 231
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.6 bits (83), Expect = 0.004
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1 MRRSPASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSGEP 42
M P PP G P GL P R P G PPG P P G G P
Sbjct: 189 MAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPP 231
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 36.6 bits (83), Expect = 0.004
Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1 MRRSPASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSGEP 42
M P PP G P GL P R P G PPG P P G G P
Sbjct: 189 MAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPP 231
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 35.8 bits (81), Expect = 0.008
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 5 PASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSGEP 42
P PP G P G+ P R P G PPG P P G G P
Sbjct: 193 PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPP 231
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 34.3 bits (77), Expect = 0.022
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 5 PASSPPGGEPRGLGPERR----------QPGCSPPGELPSPAGDSG 40
P S PPG + GP+ + QP C PPG P P G G
Sbjct: 602 PTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGPPG 647
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 34.3 bits (77), Expect = 0.022
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 5 PASSPPGGEPRGLGPERR----------QPGCSPPGELPSPAGDSG 40
P S PPG + GP+ + QP C PPG P P G G
Sbjct: 602 PTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGPPG 647
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 34.3 bits (77), Expect = 0.022
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 5 PASSPPGGEPRGLGPERR----------QPGCSPPGELPSPAGDSG 40
P S PPG + GP+ + QP C PPG P P G G
Sbjct: 602 PTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGPPG 647
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 34.3 bits (77), Expect = 0.022
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 5 PASSPPGGEPRGLGPERR----------QPGCSPPGELPSPAGDSG 40
P S PPG + GP+ + QP C PPG P P G G
Sbjct: 463 PTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGPPG 508
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 2 RRSPASSPPGGE--PRGLGPERRQPGCSPPGEL--PSPAGDSGEPADCEAEEGSAW 53
R P + P GE P GP PPG L P P G SG+P C+ SA+
Sbjct: 1712 RGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVPGPQGPSGQPGYCDPSSCSAY 1767
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 33.5 bits (75), Expect = 0.038
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 5 PASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSG 40
P PP G P G+ P R P G PPG P P G G
Sbjct: 193 PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 33.5 bits (75), Expect = 0.038
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 6 ASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGE 41
A PP G P G G PG LP+PAGD G+
Sbjct: 159 AVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGD 194
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 33.5 bits (75), Expect = 0.038
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 6 ASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGE 41
A PP G P G G PG LP+PAGD G+
Sbjct: 146 AVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGD 181
>gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]
Length = 474
Score = 33.5 bits (75), Expect = 0.038
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 6 ASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGE 41
A PP G P G G PG LP+PAGD G+
Sbjct: 146 AVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGD 181
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 6/36 (16%)
Query: 4 SPASSPPGGE--PR-GLGPERRQPGCSPPGELPSPA 36
+PA+SP G PR GLGPE ++P PPG PSPA
Sbjct: 905 APAASPQPGSRGPRDGLGPEPQEP---PPGPPPSPA 937
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 2 RRSPASSPPGGEPRGL-GPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYP 57
RR+P +P P+ GP R +PPG+ P P EEG+ + P
Sbjct: 603 RRAPEDAPAARRPKAPPGPAR-----APPGQPAEPDAPRSSPGPGAREEGAGGAATP 654
>gi|21070997 stromal interaction molecule 1 precursor [Homo sapiens]
Length = 685
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1 MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDS 39
M SP S+PPGG P L R SP + PSP GDS
Sbjct: 597 MELSP-SAPPGGSPH-LDSSRSHSPSSPDPDTPSPVGDS 633
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 10/49 (20%)
Query: 4 SPASSPPGGEPRGLGPER---RQPGCSPPGELPSPAGDSGEPADCEAEE 49
+P + PP P+ L PE +QPG SP G+ SPA PAD EAE+
Sbjct: 978 APPAPPP---PQNLQPESDAPQQPGSSPRGKSRSPA----PPADKEAEK 1019
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 10/49 (20%)
Query: 4 SPASSPPGGEPRGLGPER---RQPGCSPPGELPSPAGDSGEPADCEAEE 49
+P + PP P+ L PE +QPG SP G+ SPA PAD EAE+
Sbjct: 994 APPAPPP---PQNLQPESDAPQQPGSSPRGKSRSPA----PPADKEAEK 1035
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 5 PASSPPGGE-------PRGLGPERRQPGCSPPGELPSPAGDSGEP 42
PA PP E P P RR+ C PP P PAG S P
Sbjct: 13 PAEPPPEAEEPEADARPGAKAPSRRRRDCRPPPPPPPPAGPSRGP 57
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 32.3 bits (72), Expect = 0.084
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 5 PASSPPGGEPRGLGPE---RRQPGCSPPGELPSPAGDSGEPADCEAEEGS 51
P PP G+P+G P+ R P SPPG+ P G+P A+ GS
Sbjct: 68 PQGPPPPGKPQGPPPQGDKSRSPR-SPPGKPQGPPPQGGKPQGPPAQGGS 116
>gi|11321565 matrilin 3 precursor [Homo sapiens]
Length = 486
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 5 PASSP-PGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSA 52
P+++P P P E R PG SP G PSPA G PA +E G A
Sbjct: 24 PSAAPDPVARPGFRRLETRGPGGSP-GRRPSPAAPDGAPASGTSEPGRA 71
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 5 PASSPPGGEPRG-LGPERRQPGCSPPGELPSPAGDSGEP 42
PA G PRG GP R PPG P PAG+ G P
Sbjct: 900 PAGKEGGKGPRGETGPAGRPGEVGPPGP-PGPAGEKGSP 937
Score = 29.3 bits (64), Expect = 0.71
Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 2 RRSPASSPPGGEPRGLGP-----ERRQPGCSPPGELPSPAGDSGEPADCEAE 48
R P P GEP GP ER PG P L P G+SG AE
Sbjct: 970 RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAE 1021
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 6 ASSPPG--GEPRGLGPERRQPGCSPPGELPSPAGDSGEP 42
A+ PG G P G R G PG P P G+SGEP
Sbjct: 399 ANGAPGIAGAP-GFPGARGPSGPQGPGGPPGPKGNSGEP 436
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 5 PASSPPGGEPRGL-GPERRQPGCSPPGELPSPAGDSGEP 42
P P G PRGL GP PG P P G+ GEP
Sbjct: 178 PGPMGPSG-PRGLPGP----PGAPGPQGFQGPPGEPGEP 211
>gi|116006967 neuregulin 1 isoform GGF2 [Homo sapiens]
Length = 422
Score = 31.2 bits (69), Expect = 0.19
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 9 PPGGEPRGLGPERRQPGCSPPGELPS----PAGDSGEPAD 44
PP PR LGP +P + G +PS P +GEP +
Sbjct: 117 PPAAGPRALGPPAEEPLLAANGTVPSWPTAPVPSAGEPGE 156
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 3 RSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCE 46
RSP+ G RG G + QP P G PSP + P E
Sbjct: 612 RSPSQESIGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGTE 655
Score = 28.9 bits (63), Expect = 0.93
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 5 PASSPPGGEPRGLGPERR---QPGCSPPGELPSPAGDSGEPADCEAEE 49
P PG + GP RR +P + P E P P +G +D E EE
Sbjct: 806 PLDESPGPKEGATGPRRRTLSEP--AGPSEPPGPPAPAGPASDTEEEE 851
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 4 SPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEG 50
+PA P + L R+ P PP L S +G S EP + G
Sbjct: 766 TPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPG 812
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 31.2 bits (69), Expect = 0.19
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 3 RSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCE 46
RSP+ G RG G + QP P G PSP + P E
Sbjct: 694 RSPSQESIGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGTE 737
Score = 28.9 bits (63), Expect = 0.93
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 5 PASSPPGGEPRGLGPERR---QPGCSPPGELPSPAGDSGEPADCEAEE 49
P PG + GP RR +P + P E P P +G +D E EE
Sbjct: 888 PLDESPGPKEGATGPRRRTLSEP--AGPSEPPGPPAPAGPASDTEEEE 933
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 4 SPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEG 50
+PA P + L R+ P PP L S +G S EP + G
Sbjct: 848 TPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPG 894
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/51 (45%), Positives = 24/51 (47%), Gaps = 17/51 (33%)
Query: 7 SSPPG-----GEPR--GLGPERRQPGCSPPGE--------LPSPAGDSGEP 42
S PPG GEP G G QPG PPGE +P PAG GEP
Sbjct: 1136 SGPPGNPGLPGEPGPVGGGGHPGQPG--PPGEKGKPGQDGIPGPAGQKGEP 1184
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 7/35 (20%)
Query: 5 PASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDS 39
P S+ P GEP +GP PG PPG LP P+G S
Sbjct: 1347 PGSAGPEGEPGLIGP----PG--PPG-LPGPSGQS 1374
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 5 PASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEP 42
P S P G +GL + QPG S LP P G G P
Sbjct: 975 PGVSGPKGY-QGLPGDPGQPGLSGQPGLPGPPGPKGNP 1011
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 9 PPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEP 42
PPG P G+ + +PG LP P G+ G P
Sbjct: 145 PPG--PPGIPGMKGEPGSIIMSSLPGPKGNPGYP 176
>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
[Homo sapiens]
Length = 876
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 5 PASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSA 52
PA PG ++ P SPPG L P G +G A GSA
Sbjct: 47 PAEVGPGAVGERTPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSA 94
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,363,288
Number of Sequences: 37866
Number of extensions: 294685
Number of successful extensions: 2143
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 1615
Number of HSP's gapped (non-prelim): 765
length of query: 62
length of database: 18,247,518
effective HSP length: 35
effective length of query: 27
effective length of database: 16,922,208
effective search space: 456899616
effective search space used: 456899616
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.