Guide to the Human Genome
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Search of human proteins with 169176343

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169176343 PREDICTED: hypothetical protein [Homo sapiens]
         (62 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169178932 PREDICTED: hypothetical protein [Homo sapiens]           137   2e-33
gi|169176343 PREDICTED: hypothetical protein [Homo sapiens]           137   2e-33
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ...    37   0.004
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ...    37   0.004
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ...    37   0.004
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ...    37   0.004
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s...    37   0.004
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso...    36   0.008
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s...    34   0.022
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ...    34   0.022
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ...    34   0.022
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s...    34   0.022
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]                 34   0.022
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof...    33   0.038
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]    33   0.038
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]     33   0.038
gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]     33   0.038
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]           33   0.049
gi|21070997 stromal interaction molecule 1 precursor [Homo sapiens]    33   0.064
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap...    32   0.084
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap...    32   0.084
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]      32   0.084
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre...    32   0.084
gi|11321565 matrilin 3 precursor [Homo sapiens]                        32   0.11 
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      32   0.14 
gi|116006967 neuregulin 1 isoform GGF2 [Homo sapiens]                  31   0.19 
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]       31   0.19 
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]       31   0.19 
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    31   0.24 
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a...    31   0.24 

>gi|169178932 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 62

 Score =  137 bits (344), Expect = 2e-33
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYPLLS 60
          MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYPLLS
Sbjct: 1  MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYPLLS 60

Query: 61 SG 62
          SG
Sbjct: 61 SG 62


>gi|169176343 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 62

 Score =  137 bits (344), Expect = 2e-33
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYPLLS 60
          MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYPLLS
Sbjct: 1  MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYPLLS 60

Query: 61 SG 62
          SG
Sbjct: 61 SG 62


>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 1   MRRSPASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSGEP 42
           M   P   PP G P GL P R  P G  PPG  P P G  G P
Sbjct: 189 MAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPP 231


>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 1   MRRSPASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSGEP 42
           M   P   PP G P GL P R  P G  PPG  P P G  G P
Sbjct: 189 MAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPP 231


>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 1   MRRSPASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSGEP 42
           M   P   PP G P GL P R  P G  PPG  P P G  G P
Sbjct: 189 MAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPP 231


>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 1   MRRSPASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSGEP 42
           M   P   PP G P GL P R  P G  PPG  P P G  G P
Sbjct: 189 MAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPP 231


>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 20/43 (46%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 1   MRRSPASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSGEP 42
           M   P   PP G P GL P R  P G  PPG  P P G  G P
Sbjct: 189 MAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPP 231


>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
           isoform B' [Homo sapiens]
          Length = 240

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 5   PASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSGEP 42
           P   PP G P G+ P R  P G  PPG  P P G  G P
Sbjct: 193 PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPP 231


>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
           sapiens]
          Length = 816

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 10/46 (21%)

Query: 5   PASSPPGGEPRGLGPERR----------QPGCSPPGELPSPAGDSG 40
           P S PPG   +  GP+ +          QP C PPG  P P G  G
Sbjct: 602 PTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGPPG 647


>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
           sapiens]
          Length = 816

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 10/46 (21%)

Query: 5   PASSPPGGEPRGLGPERR----------QPGCSPPGELPSPAGDSG 40
           P S PPG   +  GP+ +          QP C PPG  P P G  G
Sbjct: 602 PTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGPPG 647


>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
           sapiens]
          Length = 816

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 10/46 (21%)

Query: 5   PASSPPGGEPRGLGPERR----------QPGCSPPGELPSPAGDSG 40
           P S PPG   +  GP+ +          QP C PPG  P P G  G
Sbjct: 602 PTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGPPG 647


>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
           sapiens]
          Length = 677

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 10/46 (21%)

Query: 5   PASSPPGGEPRGLGPERR----------QPGCSPPGELPSPAGDSG 40
           P S PPG   +  GP+ +          QP C PPG  P P G  G
Sbjct: 463 PTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPGPAPHPTGPPG 508


>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
          Length = 1796

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 2    RRSPASSPPGGE--PRGLGPERRQPGCSPPGEL--PSPAGDSGEPADCEAEEGSAW 53
            R  P  + P GE  P   GP        PPG L  P P G SG+P  C+    SA+
Sbjct: 1712 RGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVPGPQGPSGQPGYCDPSSCSAY 1767


>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
           B [Homo sapiens]
          Length = 231

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 5   PASSPPGGEPRGLGPERRQP-GCSPPGELPSPAGDSG 40
           P   PP G P G+ P R  P G  PPG  P P G  G
Sbjct: 193 PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229


>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
          Length = 516

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 16/36 (44%), Positives = 18/36 (50%)

Query: 6   ASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGE 41
           A  PP G P G        G   PG LP+PAGD G+
Sbjct: 159 AVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGD 194


>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
          Length = 503

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 16/36 (44%), Positives = 18/36 (50%)

Query: 6   ASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGE 41
           A  PP G P G        G   PG LP+PAGD G+
Sbjct: 146 AVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGD 181


>gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]
          Length = 474

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 16/36 (44%), Positives = 18/36 (50%)

Query: 6   ASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGE 41
           A  PP G P G        G   PG LP+PAGD G+
Sbjct: 146 AVPPPQGGPPGPFLAHTHAGLQAPGPLPAPAGDKGD 181


>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
          Length = 1006

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 6/36 (16%)

Query: 4   SPASSPPGGE--PR-GLGPERRQPGCSPPGELPSPA 36
           +PA+SP  G   PR GLGPE ++P   PPG  PSPA
Sbjct: 905 APAASPQPGSRGPRDGLGPEPQEP---PPGPPPSPA 937



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 2   RRSPASSPPGGEPRGL-GPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSAWFSYP 57
           RR+P  +P    P+   GP R     +PPG+   P      P     EEG+   + P
Sbjct: 603 RRAPEDAPAARRPKAPPGPAR-----APPGQPAEPDAPRSSPGPGAREEGAGGAATP 654


>gi|21070997 stromal interaction molecule 1 precursor [Homo sapiens]
          Length = 685

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 1   MRRSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDS 39
           M  SP S+PPGG P  L   R     SP  + PSP GDS
Sbjct: 597 MELSP-SAPPGGSPH-LDSSRSHSPSSPDPDTPSPVGDS 633


>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
          Length = 2462

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 10/49 (20%)

Query: 4    SPASSPPGGEPRGLGPER---RQPGCSPPGELPSPAGDSGEPADCEAEE 49
            +P + PP   P+ L PE    +QPG SP G+  SPA     PAD EAE+
Sbjct: 978  APPAPPP---PQNLQPESDAPQQPGSSPRGKSRSPA----PPADKEAEK 1019


>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
          Length = 2524

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 10/49 (20%)

Query: 4    SPASSPPGGEPRGLGPER---RQPGCSPPGELPSPAGDSGEPADCEAEE 49
            +P + PP   P+ L PE    +QPG SP G+  SPA     PAD EAE+
Sbjct: 994  APPAPPP---PQNLQPESDAPQQPGSSPRGKSRSPA----PPADKEAEK 1035


>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
          Length = 1178

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 5  PASSPPGGE-------PRGLGPERRQPGCSPPGELPSPAGDSGEP 42
          PA  PP  E       P    P RR+  C PP   P PAG S  P
Sbjct: 13 PAEPPPEAEEPEADARPGAKAPSRRRRDCRPPPPPPPPAGPSRGP 57


>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
           preproprotein [Homo sapiens]
          Length = 178

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 5   PASSPPGGEPRGLGPE---RRQPGCSPPGELPSPAGDSGEPADCEAEEGS 51
           P   PP G+P+G  P+    R P  SPPG+   P    G+P    A+ GS
Sbjct: 68  PQGPPPPGKPQGPPPQGDKSRSPR-SPPGKPQGPPPQGGKPQGPPAQGGS 116


>gi|11321565 matrilin 3 precursor [Homo sapiens]
          Length = 486

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 5  PASSP-PGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSA 52
          P+++P P   P     E R PG SP G  PSPA   G PA   +E G A
Sbjct: 24 PSAAPDPVARPGFRRLETRGPGGSP-GRRPSPAAPDGAPASGTSEPGRA 71


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 5   PASSPPGGEPRG-LGPERRQPGCSPPGELPSPAGDSGEP 42
           PA    G  PRG  GP  R     PPG  P PAG+ G P
Sbjct: 900 PAGKEGGKGPRGETGPAGRPGEVGPPGP-PGPAGEKGSP 937



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 20/52 (38%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 2    RRSPASSPPGGEPRGLGP-----ERRQPGCSPPGELPSPAGDSGEPADCEAE 48
            R  P    P GEP   GP     ER  PG   P  L  P G+SG      AE
Sbjct: 970  RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAE 1021



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 6   ASSPPG--GEPRGLGPERRQPGCSPPGELPSPAGDSGEP 42
           A+  PG  G P G    R   G   PG  P P G+SGEP
Sbjct: 399 ANGAPGIAGAP-GFPGARGPSGPQGPGGPPGPKGNSGEP 436



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 6/39 (15%)

Query: 5   PASSPPGGEPRGL-GPERRQPGCSPPGELPSPAGDSGEP 42
           P    P G PRGL GP    PG   P     P G+ GEP
Sbjct: 178 PGPMGPSG-PRGLPGP----PGAPGPQGFQGPPGEPGEP 211


>gi|116006967 neuregulin 1 isoform GGF2 [Homo sapiens]
          Length = 422

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 9   PPGGEPRGLGPERRQPGCSPPGELPS----PAGDSGEPAD 44
           PP   PR LGP   +P  +  G +PS    P   +GEP +
Sbjct: 117 PPAAGPRALGPPAEEPLLAANGTVPSWPTAPVPSAGEPGE 156


>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
          Length = 1120

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 16/44 (36%), Positives = 19/44 (43%)

Query: 3   RSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCE 46
           RSP+    G   RG G  + QP   P G  PSP  +   P   E
Sbjct: 612 RSPSQESIGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGTE 655



 Score = 28.9 bits (63), Expect = 0.93
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 5   PASSPPGGEPRGLGPERR---QPGCSPPGELPSPAGDSGEPADCEAEE 49
           P    PG +    GP RR   +P  + P E P P   +G  +D E EE
Sbjct: 806 PLDESPGPKEGATGPRRRTLSEP--AGPSEPPGPPAPAGPASDTEEEE 851



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 4   SPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEG 50
           +PA   P  +   L   R+ P   PP  L S +G S EP   +   G
Sbjct: 766 TPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPG 812


>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
          Length = 1202

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 16/44 (36%), Positives = 19/44 (43%)

Query: 3   RSPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCE 46
           RSP+    G   RG G  + QP   P G  PSP  +   P   E
Sbjct: 694 RSPSQESIGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGTE 737



 Score = 28.9 bits (63), Expect = 0.93
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 5   PASSPPGGEPRGLGPERR---QPGCSPPGELPSPAGDSGEPADCEAEE 49
           P    PG +    GP RR   +P  + P E P P   +G  +D E EE
Sbjct: 888 PLDESPGPKEGATGPRRRTLSEP--AGPSEPPGPPAPAGPASDTEEEE 933



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 4   SPASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEG 50
           +PA   P  +   L   R+ P   PP  L S +G S EP   +   G
Sbjct: 848 TPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPPPLDESPG 894


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
            sapiens]
          Length = 1691

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 23/51 (45%), Positives = 24/51 (47%), Gaps = 17/51 (33%)

Query: 7    SSPPG-----GEPR--GLGPERRQPGCSPPGE--------LPSPAGDSGEP 42
            S PPG     GEP   G G    QPG  PPGE        +P PAG  GEP
Sbjct: 1136 SGPPGNPGLPGEPGPVGGGGHPGQPG--PPGEKGKPGQDGIPGPAGQKGEP 1184



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 7/35 (20%)

Query: 5    PASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDS 39
            P S+ P GEP  +GP    PG  PPG LP P+G S
Sbjct: 1347 PGSAGPEGEPGLIGP----PG--PPG-LPGPSGQS 1374



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 5    PASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEP 42
            P  S P G  +GL  +  QPG S    LP P G  G P
Sbjct: 975  PGVSGPKGY-QGLPGDPGQPGLSGQPGLPGPPGPKGNP 1011



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 9   PPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEP 42
           PPG  P G+   + +PG      LP P G+ G P
Sbjct: 145 PPG--PPGIPGMKGEPGSIIMSSLPGPKGNPGYP 176


>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
          [Homo sapiens]
          Length = 876

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 17/48 (35%), Positives = 20/48 (41%)

Query: 5  PASSPPGGEPRGLGPERRQPGCSPPGELPSPAGDSGEPADCEAEEGSA 52
          PA   PG        ++  P  SPPG L  P G +G  A      GSA
Sbjct: 47 PAEVGPGAVGERTPRKKEPPRASPPGGLAEPPGSAGPQAGPTVVPGSA 94


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.307    0.134    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,363,288
Number of Sequences: 37866
Number of extensions: 294685
Number of successful extensions: 2143
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 1615
Number of HSP's gapped (non-prelim): 765
length of query: 62
length of database: 18,247,518
effective HSP length: 35
effective length of query: 27
effective length of database: 16,922,208
effective search space: 456899616
effective search space used: 456899616
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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