Search of human proteins with 11128015

Search of human proteins with 11128015

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|11128015 interferon, alpha 6 [Homo sapiens]
         (189 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|11128015 interferon, alpha 6 [Homo sapiens]                        380   e-106
gi|4504597 interferon, alpha 5 [Homo sapiens]                         327   4e-90
gi|170763491 interferon, alpha 14 [Homo sapiens]                      318   2e-87
gi|194394174 interferon, alpha 13 precursor [Homo sapiens]            316   9e-87
gi|11067751 interferon, alpha 2 [Homo sapiens]                        315   1e-86
gi|13128950 interferon, alpha 1 [Homo sapiens]                        314   3e-86
gi|10835103 interferon, alpha 4 [Homo sapiens]                        307   4e-84
gi|4504589 interferon, alpha 10 [Homo sapiens]                        305   1e-83
gi|169791013 interferon, alpha 21 [Homo sapiens]                      304   3e-83
gi|10880985 interferon, alpha 17 [Homo sapiens]                       300   5e-82
gi|4504593 interferon, alpha 16 [Homo sapiens]                        296   9e-81
gi|71143135 interferon, alpha 7 [Homo sapiens]                        293   6e-80
gi|42476083 interferon, alpha 8 [Homo sapiens]                        292   1e-79
gi|4504605 interferon, omega 1 [Homo sapiens]                         204   4e-53
gi|28882045 interferon, epsilon [Homo sapiens]                        101   4e-22
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]               92   3e-19
gi|112789564 interferon kappa precursor [Homo sapiens]                 75   3e-14
gi|54859722 nucleoporin 160kDa [Homo sapiens]                          28   4.7  
gi|40795665 ubiquitin specific protease 4 isoform a [Homo sapiens]     28   6.1  
gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens]     28   6.1  
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [...    28   6.1  
gi|145275216 kinesin family member 2B [Homo sapiens]                   27   8.0  

>gi|11128015 interferon, alpha 6 [Homo sapiens]
          Length = 189

 Score =  380 bits (977), Expect = e-106
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
Sbjct: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
           FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
Sbjct: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180

Query: 181 LQERLRRKE 189
           LQERLRRKE
Sbjct: 181 LQERLRRKE 189


>gi|4504597 interferon, alpha 5 [Homo sapiens]
          Length = 189

 Score =  327 bits (838), Expect = 4e-90
 Identities = 163/189 (86%), Positives = 171/189 (90%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MALPF LLMALVVL+CKS CSL CDLPQTHSL +RRT+M++AQM RIS FSCLKDRHDF 
Sbjct: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
           FPQEEFDGNQFQKA+AISVLHE+IQQTFNLFSTKDSS  WDE LLDK YTELYQQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           AC+MQEV V  TPLMN DSIL VRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFS S N
Sbjct: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180

Query: 181 LQERLRRKE 189
           LQERLRRKE
Sbjct: 181 LQERLRRKE 189


>gi|170763491 interferon, alpha 14 [Homo sapiens]
          Length = 189

 Score =  318 bits (814), Expect = 2e-87
 Identities = 157/189 (83%), Positives = 173/189 (91%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MALPFAL+MALVVLSCKSSCSL C+L QTHSL +RRT+ML+AQMRRIS FSCLKDRHDF 
Sbjct: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
           FPQEEFDGNQFQKA+AISVLHE++QQTFNLFSTK+SS AWDE LL+K Y EL+QQ+NDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           ACV+QEV V  TPLMNEDSILAV+KYFQRITLYL EKKYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQERLRRKE 189
           LQ+RLRRK+
Sbjct: 181 LQKRLRRKD 189


>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
          Length = 190

 Score =  316 bits (809), Expect = 9e-87
 Identities = 161/189 (85%), Positives = 168/189 (88%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MA PFALLMALVVLSCKSSCSL CDLP+THSL +RRT+MLLAQM RIS  SCL DRHDF 
Sbjct: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
           FPQEEFDGNQFQKA AISVLHE+IQQ FNLF+TKDSS AWDE LLDK  TELYQQLNDLE
Sbjct: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           ACVMQE  VG TPLMN DSILAV+KYF+RITLYLTEKKYSPCAWEVVRAEIMRS S S N
Sbjct: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181

Query: 181 LQERLRRKE 189
           LQERLRRKE
Sbjct: 182 LQERLRRKE 190


>gi|11067751 interferon, alpha 2 [Homo sapiens]
          Length = 188

 Score =  315 bits (807), Expect = 1e-86
 Identities = 162/189 (85%), Positives = 168/189 (88%), Gaps = 1/189 (0%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MAL FALL+AL+VLSCKSSCS+ CDLPQTHSLG RRT+MLLAQMRRISLFSCLKDRHDF 
Sbjct: 1   MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
           FPQEEF GNQFQKAE I VLHE+IQQ FNLFSTKDSS AWDE LLDK YTELYQQLNDLE
Sbjct: 61  FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           ACV+Q V V  TPLM EDSILAVRKYFQRITLYL EKKYSPCAWEVVRAEIMRSFS S N
Sbjct: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179

Query: 181 LQERLRRKE 189
           LQE LR KE
Sbjct: 180 LQESLRSKE 188


>gi|13128950 interferon, alpha 1 [Homo sapiens]
          Length = 189

 Score =  314 bits (805), Expect = 3e-86
 Identities = 160/189 (84%), Positives = 167/189 (88%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MA PFALLM LVVLSCKSSCSL CDLP+THSL +RRT+MLLAQM RIS  SCL DRHDF 
Sbjct: 1   MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
           FPQEEFDGNQFQKA AISVLHE+IQQ FNLF+TKDSS AWDE LLDK  TELYQQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 120

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           ACVMQE  VG TPLMN DSILAV+KYF+RITLYLTEKKYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 180

Query: 181 LQERLRRKE 189
           LQERLRRKE
Sbjct: 181 LQERLRRKE 189


>gi|10835103 interferon, alpha 4 [Homo sapiens]
          Length = 189

 Score =  307 bits (786), Expect = 4e-84
 Identities = 154/189 (81%), Positives = 171/189 (90%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MAL F+LLMA++VLS KS CSL CDLPQTHSLG+RR ++LLAQM RIS FSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
           FP+EEFDG+QFQKA+AISVLHE+IQQTFNLFST+DSS AW++ LL+K  TELYQQLNDLE
Sbjct: 61  FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           ACV+QEV V  TPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQERLRRKE 189
           LQ+RLRRK+
Sbjct: 181 LQKRLRRKD 189


>gi|4504589 interferon, alpha 10 [Homo sapiens]
          Length = 189

 Score =  305 bits (782), Expect = 1e-83
 Identities = 153/189 (80%), Positives = 169/189 (89%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MAL F+LLMA++VLS KS CSL CDLPQTHSLG+RR ++LL QM RIS FSCLKDRHDFR
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
            PQEEFDGNQFQKA+AISVLHE+IQQTFNLFST+DSS AW++ LL+K  TELYQQLNDLE
Sbjct: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           ACV+QEV V  TPLMNEDSILAVRKYFQRITLYL E+KYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQERLRRKE 189
           LQ+RLRRK+
Sbjct: 181 LQKRLRRKD 189


>gi|169791013 interferon, alpha 21 [Homo sapiens]
          Length = 189

 Score =  304 bits (778), Expect = 3e-83
 Identities = 154/189 (81%), Positives = 168/189 (88%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MAL F+LLMA++VLS KS CSL CDLPQTHSLG+RR ++LLAQM RIS FSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
           FPQEEFDGNQFQKA+AISVLHE+IQQTFNLFSTKDSS  W++ LL+K  TEL QQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           ACV+QEV V  TPLMN DSILAV+KYFQRITLYLTEKKYSPCAWEVVRAEIMRSFS S+ 
Sbjct: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180

Query: 181 LQERLRRKE 189
            QERLRRKE
Sbjct: 181 FQERLRRKE 189


>gi|10880985 interferon, alpha 17 [Homo sapiens]
          Length = 189

 Score =  300 bits (768), Expect = 5e-82
 Identities = 151/189 (79%), Positives = 168/189 (88%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MAL F+LLMA++VLS KS CSL CDLPQTHSLG+RR ++LLAQM RIS FSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
            PQEEFDGNQFQK +AISVLHE+IQQTFNLFST+DSS AW++ LL+K  TELYQQLN+LE
Sbjct: 61  LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           ACV+QEV +  TPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQERLRRKE 189
           LQ+ LRRK+
Sbjct: 181 LQKILRRKD 189


>gi|4504593 interferon, alpha 16 [Homo sapiens]
          Length = 189

 Score =  296 bits (757), Expect = 9e-81
 Identities = 151/189 (79%), Positives = 163/189 (86%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MAL F+LLMA++VLS KS CSL CDLPQTHSLG+RR ++LLAQM RIS FSCLKDR+DF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
           FPQE FDGNQFQKA+AIS  HE+IQQTFNLFSTKDSS AWDE LLDK Y EL+QQLNDLE
Sbjct: 61  FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           ACV QEV V    LMNEDSILAVRKYFQRITLYL  KKYSPCAWEVVRAEIMRSFS S N
Sbjct: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180

Query: 181 LQERLRRKE 189
           LQ+ LRRK+
Sbjct: 181 LQKGLRRKD 189


>gi|71143135 interferon, alpha 7 [Homo sapiens]
          Length = 189

 Score =  293 bits (750), Expect = 6e-80
 Identities = 147/189 (77%), Positives = 166/189 (87%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MA  F+LLM ++VLS KS CSL CDLPQTHSL +RR ++LLAQM RIS FSCLKDRH+FR
Sbjct: 1   MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
           FP+EEFDG+QFQK +AISVLHE+IQQTFNLFST+DSS AW++ LL+K  TELYQQLNDLE
Sbjct: 61  FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           ACV+QEV V  TPLMNED ILAVRKYFQRITLYL EKKYSPCAWEVVRAEIMRSFS S N
Sbjct: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180

Query: 181 LQERLRRKE 189
           L++ LRRK+
Sbjct: 181 LKKGLRRKD 189


>gi|42476083 interferon, alpha 8 [Homo sapiens]
          Length = 189

 Score =  292 bits (747), Expect = 1e-79
 Identities = 153/189 (80%), Positives = 164/189 (86%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MAL F LL+ALVVLS KS  SL CDLPQTHSLG+RR ++LLAQMRRIS FSCLKDRHDF 
Sbjct: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
           FPQEEFD  QFQKA+AISVLHE+IQQTFNLFSTKDSS A DE LLD+ Y EL QQLNDLE
Sbjct: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
           +CVMQEV V  +PLM EDSILAVRKYFQRITLYLTEKKYS CAWEVVRAEIMRSFS S N
Sbjct: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180

Query: 181 LQERLRRKE 189
           LQ+RL+ KE
Sbjct: 181 LQKRLKSKE 189


>gi|4504605 interferon, omega 1 [Homo sapiens]
          Length = 195

 Score =  204 bits (519), Expect = 4e-53
 Identities = 109/189 (57%), Positives = 131/189 (69%)

Query: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
           MAL F LL ALV+ S     SL CDLPQ H L  R T++LL QMRRIS F CLKDR DFR
Sbjct: 1   MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60

Query: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
           FPQE   G+Q QKA  +SVLHE++QQ F+LF T+ SS AW+  LLD+L+T L+QQL  LE
Sbjct: 61  FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120

Query: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
            C++Q V  G +        L +R+YFQ I +YL EKKYS CAWEVVR EIM+S   S N
Sbjct: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180

Query: 181 LQERLRRKE 189
           +QERLR K+
Sbjct: 181 MQERLRSKD 189


>gi|28882045 interferon, epsilon [Homo sapiens]
          Length = 208

 Score =  101 bits (251), Expect = 4e-22
 Identities = 61/180 (33%), Positives = 100/180 (55%), Gaps = 3/180 (1%)

Query: 11  LVVLSCKSSCSLDCDLP--QTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFRFPQEEFDG 68
           LV+L+  +  SLD  L   Q   + ++ ++ LL +++ +S+  CL  R +F  PQ+    
Sbjct: 11  LVLLASTTIFSLDLKLIIFQQRQV-NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSP 69

Query: 69  NQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLEACVMQEVW 128
            Q+QK   +++LHE++QQ F+LF    S   W+E   +K   +L+QQL  LEA +  E  
Sbjct: 70  QQYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAE 129

Query: 129 VGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRNLQERLRRK 188
                L +++  L V+ YF+RI  YL  + YS CAW +V+ EI R      +L E+L ++
Sbjct: 130 KLSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189


>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
          Length = 187

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 48/135 (35%), Positives = 75/135 (55%)

Query: 52  CLKDRHDFRFPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTE 111
           CLKDR +F  P+E     QFQK +A   ++E++Q  F +F    SS  W+E +++ L   
Sbjct: 52  CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111

Query: 112 LYQQLNDLEACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEI 171
           +Y Q+N L+  + +++           S L +++Y+ RI  YL  K+YS CAW +VR EI
Sbjct: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171

Query: 172 MRSFSSSRNLQERLR 186
           +R+F     L   LR
Sbjct: 172 LRNFYFINRLTGYLR 186


>gi|112789564 interferon kappa precursor [Homo sapiens]
          Length = 207

 Score = 75.1 bits (183), Expect = 3e-14
 Identities = 61/201 (30%), Positives = 85/201 (42%), Gaps = 27/201 (13%)

Query: 8   LMALVVLSCKSSCSLDCDLPQTHSLGHR-RTMMLLAQMRRISLFSCLKDRHDFRFPQEEF 66
           L  L+ +    + SLDC+L   H      + +  L+ M       CL++   F  PQE  
Sbjct: 14  LEILMGIFIAGTLSLDCNLLNVHLRRVTWQNLRHLSSMSNSFPVECLRENIAFELPQEFL 73

Query: 67  DGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLEACVMQE 126
              Q  K +     +E+  Q FN+FS + +   W ER L ++   L QQ   L  C+ ++
Sbjct: 74  QYTQPMKRDIKKAFYEMSLQAFNIFS-QHTFKYWKERHLKQIQIGLDQQAEYLNQCLEED 132

Query: 127 VWVGGTPLMNED-------------------SILAVRKYFQRITLYLTEKKYSPCAWEVV 167
                    NED                   S L +R+YF RI  +L EKKYS CAWE+V
Sbjct: 133 ------KNENEDMKEMKENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWEIV 186

Query: 168 RAEIMRSFSSSRNLQERLRRK 188
           R EI R            RRK
Sbjct: 187 RVEIRRCLYYFYKFTALFRRK 207


>gi|54859722 nucleoporin 160kDa [Homo sapiens]
          Length = 1436

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 68   GNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDL-EACVMQE 126
            G +  +AEA + L     Q  ++ +TK+SS   +   L   Y E Y+  N+L   CV+ +
Sbjct: 1256 GGEAAQAEAWAWL--AANQLSSVITTKESSATDEAWRLLSTYLERYKVQNNLYHHCVINK 1313

Query: 127  VWVGGTPLMN 136
            +   G PL N
Sbjct: 1314 LLSHGVPLPN 1323


>gi|40795665 ubiquitin specific protease 4 isoform a [Homo sapiens]
          Length = 963

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 71  FQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLEACVMQEVWVG 130
           F KA+ I+ + + +++ FN+ + +++      RL +K  +  Y+QL+ L+  V       
Sbjct: 156 FSKADTIATIEKEMRKLFNIPAERET------RLWNKYMSNTYEQLSKLDNTVQDAGLYQ 209

Query: 131 GTPLMNE 137
           G  L+ E
Sbjct: 210 GQVLVIE 216


>gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens]
          Length = 916

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 71  FQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLEACVMQEVWVG 130
           F KA+ I+ + + +++ FN+ + +++      RL +K  +  Y+QL+ L+  V       
Sbjct: 156 FSKADTIATIEKEMRKLFNIPAERET------RLWNKYMSNTYEQLSKLDNTVQDAGLYQ 209

Query: 131 GTPLMNE 137
           G  L+ E
Sbjct: 210 GQVLVIE 216


>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
            sapiens]
          Length = 1937

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 80   LHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLEACVMQE 126
            L E  QQT +    ++  V     +L K  T+L QQ++DLE  + QE
Sbjct: 1002 LQETHQQTLDDLQAEEDKV----NILTKAKTKLEQQVDDLEGSLEQE 1044


>gi|145275216 kinesin family member 2B [Homo sapiens]
          Length = 673

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 154 LTEKKYSPCAWEVVRAEIMRSFSSSRNLQERLRRK 188
           L ++K SPC WE+ + +  R     R LQ+ +R +
Sbjct: 141 LMKQKKSPCLWEIQKLQEQR--EKRRRLQQEIRAR 173


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,699,278
Number of Sequences: 37866
Number of extensions: 262958
Number of successful extensions: 801
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 22
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.