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Search of human proteins with 169172682
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169172682 PREDICTED: hypothetical protein [Homo sapiens]
(237 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169172682 PREDICTED: hypothetical protein [Homo sapiens] 466 e-131
gi|169172911 PREDICTED: hypothetical protein [Homo sapiens] 466 e-131
gi|169172807 PREDICTED: hypothetical protein [Homo sapiens] 392 e-109
gi|197927231 hypothetical protein LOC389152 [Homo sapiens] 44 1e-04
gi|197927236 hypothetical protein LOC729627 [Homo sapiens] 39 0.004
gi|61966747 hypothetical protein LOC389151 [Homo sapiens] 39 0.005
gi|109138557 protein tyrosine phosphatase, non-receptor type 20A... 35 0.043
gi|108802604 protein tyrosine phosphatase, non-receptor type 20 ... 35 0.043
gi|109138559 protein tyrosine phosphatase, non-receptor type 20A... 35 0.057
gi|45243554 protein tyrosine phosphatase, non-receptor type 20 i... 35 0.057
gi|203097003 Rho GTPase activating protein 21 [Homo sapiens] 34 0.097
gi|222080055 MAP3K12 binding inhibitory protein 1 isoform 2 [Hom... 34 0.13
gi|222080053 MAP3K12 binding inhibitory protein 1 isoform 1 [Hom... 34 0.13
gi|66392146 RNA U, small nuclear RNA export adaptor (phosphoryla... 33 0.22
gi|239751846 PREDICTED: similar to hCG2036794 [Homo sapiens] 33 0.28
gi|239746337 PREDICTED: similar to hCG2036794 [Homo sapiens] 33 0.28
gi|58530876 melanoma antigen family C, 1 [Homo sapiens] 32 0.48
gi|169213985 PREDICTED: similar to hCG2036794 [Homo sapiens] 32 0.63
gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] 31 0.82
gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens] 31 0.82
gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens] 31 0.82
gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens] 31 0.82
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 31 0.82
gi|226528146 HRAS-like suppressor family, member 5 isoform 3 [Ho... 31 1.1
gi|16905367 HRAS-like suppressor family, member 5 isoform 1 [Hom... 31 1.1
gi|14589951 DNA directed RNA polymerase II polypeptide E [Homo s... 31 1.1
gi|156119601 spermatogenesis and oogenesis specific basic helix-... 30 1.8
gi|156119603 spermatogenesis and oogenesis specific basic helix-... 30 1.8
gi|226491950 HRAS-like suppressor family, member 5 isoform 2 [Ho... 30 2.4
gi|4505293 MYB-related protein B [Homo sapiens] 30 2.4
>gi|169172682 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 466 bits (1198), Expect = e-131
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MYGYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLN 60
MYGYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLN
Sbjct: 1 MYGYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLN 60
Query: 61 SYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENTVLVIVPE 120
SYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENTVLVIVPE
Sbjct: 61 SYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENTVLVIVPE 120
Query: 121 HVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPAEEGKAAPLYQQ 180
HVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPAEEGKAAPLYQQ
Sbjct: 121 HVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPAEEGKAAPLYQQ 180
Query: 181 PLMIPQANHMAGISPSFLQQQNSSTETFIIVVPEQGTELTLRLEEYVLILSPQTALP 237
PLMIPQANHMAGISPSFLQQQNSSTETFIIVVPEQGTELTLRLEEYVLILSPQTALP
Sbjct: 181 PLMIPQANHMAGISPSFLQQQNSSTETFIIVVPEQGTELTLRLEEYVLILSPQTALP 237
>gi|169172911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 466 bits (1198), Expect = e-131
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MYGYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLN 60
MYGYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLN
Sbjct: 1 MYGYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLN 60
Query: 61 SYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENTVLVIVPE 120
SYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENTVLVIVPE
Sbjct: 61 SYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENTVLVIVPE 120
Query: 121 HVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPAEEGKAAPLYQQ 180
HVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPAEEGKAAPLYQQ
Sbjct: 121 HVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPAEEGKAAPLYQQ 180
Query: 181 PLMIPQANHMAGISPSFLQQQNSSTETFIIVVPEQGTELTLRLEEYVLILSPQTALP 237
PLMIPQANHMAGISPSFLQQQNSSTETFIIVVPEQGTELTLRLEEYVLILSPQTALP
Sbjct: 181 PLMIPQANHMAGISPSFLQQQNSSTETFIIVVPEQGTELTLRLEEYVLILSPQTALP 237
>gi|169172807 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 392 bits (1008), Expect = e-109
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MYGYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLN 60
MYGYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLN
Sbjct: 1 MYGYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLN 60
Query: 61 SYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENTVLVIVPE 120
SYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENTVLVIVPE
Sbjct: 61 SYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENTVLVIVPE 120
Query: 121 HVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPAEEGKAAPLYQQ 180
HVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPAEEGKAAPLYQQ
Sbjct: 121 HVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPAEEGKAAPLYQQ 180
Query: 181 PLMIPQANHMAGISPSFL 198
PLMIPQANHMAGISPSFL
Sbjct: 181 PLMIPQANHMAGISPSFL 198
Score = 42.4 bits (98), Expect = 4e-04
Identities = 22/37 (59%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
Query: 200 QQNSSTETFIIVVPEQGTELTLRLEEYVLILSPQTAL 236
QQ+S TE +IV+ EQGTE+ L LEE +LIL+P+T L
Sbjct: 71 QQDSGTEELMIVL-EQGTEVRLSLEEVILILAPETVL 106
>gi|197927231 hypothetical protein LOC389152 [Homo sapiens]
Length = 262
Score = 43.9 bits (102), Expect = 1e-04
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 63 QSLELPQNQQDSGTEEL-----MIVLEQGTEVRLSLEEVILIL--APETVLQLTLENTVL 115
+S P + +GT + M+VL+ G +R+ LE+V L+L AP +VL+++L L
Sbjct: 38 ESRAAPSPEDPAGTPAVDALTSMVVLDAGCALRVPLEDVDLVLELAPMSVLRVSLGGHTL 97
Query: 116 VIVPEHVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPAE----E 171
+++PE +L S D S Q + D L H +D + +VP AE E
Sbjct: 98 IVIPEVLLSSVDEC-SGAQGDWSAGLEVDVFLGAHGEDVVVEQEVCASVPEIAAEEEAYE 156
Query: 172 GKAAPLYQQPLMIPQANHMAGISPS 196
A + + M A AG+ PS
Sbjct: 157 EDADSEFPELWMDSAAGSAAGLYPS 181
>gi|197927236 hypothetical protein LOC729627 [Homo sapiens]
Length = 266
Score = 38.9 bits (89), Expect = 0.004
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 64 SLELPQNQQDSGTEELMIVLEQGTEVRLSLEEV--ILILAPETVLQLTLENTVLVIVPEH 121
SLE P G ++VL G +R+ L++V +L L P ++L+++L+ L+++PE
Sbjct: 44 SLEDPAGTPAVGALTSIVVLAAGCALRVPLDDVDLVLELPPTSILRVSLDGHTLILIPEV 103
Query: 122 VLRSED 127
+L S D
Sbjct: 104 LLSSVD 109
>gi|61966747 hypothetical protein LOC389151 [Homo sapiens]
Length = 265
Score = 38.5 bits (88), Expect = 0.005
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 43 GPSTGAKKPSISGAPHLNSYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILIL-- 100
GP+ + +G P + SLE P ++VL G +R+ L++V L+L
Sbjct: 24 GPAKRLRLEEPAG-PEPRAAPSLEDPAGDPAVDALTSIVVLAAGCALRVPLDDVDLVLEP 82
Query: 101 APETVLQLTLENTVLVIVPEHVLRSED---GLQ----SPVQIQYIIPSVDD---FSLEFH 150
AP ++L+++L L+++PE +L S D G Q + +++ + +V + LEF
Sbjct: 83 APTSILRVSLGGHTLILIPEVLLSSVDERSGAQHDSSAGLEVDVFLGAVREDVVVELEFC 142
Query: 151 AQDGDISDMRRENVPFSPAEEGKAAPLYQQPLMIPQANHMAGISPS 196
A +I+ A E A P + + M AG+ PS
Sbjct: 143 ASVPEIAAQEE-------AYEEDADPEFPELRMDSPTGSAAGLYPS 181
>gi|109138557 protein tyrosine phosphatase, non-receptor type 20A
isoform 1 [Homo sapiens]
Length = 420
Score = 35.4 bits (80), Expect = 0.043
Identities = 55/233 (23%), Positives = 88/233 (37%), Gaps = 36/233 (15%)
Query: 7 LRSPRDSQTEPQNDNEG-----------ETSLATTQMNPPKRRQVEQGPSTGAKKPSISG 55
+ SPRD + EP ND EG ET +++Q N P+ + E ++ K S+
Sbjct: 1 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN 60
Query: 56 APHLNSYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENTVL 115
PH N Y+ ++ + +SG++ M E P L L +T
Sbjct: 61 FPH-NDYE--DVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRK 117
Query: 116 VIVPEHVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPAEEGKAA 175
++ SE L QI+ +I FH Q I D EE AA
Sbjct: 118 IV-------SEGELDQLAQIRPLI-------FNFHEQTA-IKDC------LKILEEKTAA 156
Query: 176 PLYQQPLMIPQANHMAGISPSFLQQQNSSTETFIIVVPEQGTELTL-RLEEYV 227
Q M + ++ G S Q N + ++P T + L + ++Y+
Sbjct: 157 YDIMQEFMALELKNLPGEFNSGNQPSNREKNRYRDILPYDSTRVPLGKSKDYI 209
>gi|108802604 protein tyrosine phosphatase, non-receptor type 20
isoform 1 [Homo sapiens]
Length = 420
Score = 35.4 bits (80), Expect = 0.043
Identities = 55/233 (23%), Positives = 88/233 (37%), Gaps = 36/233 (15%)
Query: 7 LRSPRDSQTEPQNDNEG-----------ETSLATTQMNPPKRRQVEQGPSTGAKKPSISG 55
+ SPRD + EP ND EG ET +++Q N P+ + E ++ K S+
Sbjct: 1 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN 60
Query: 56 APHLNSYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENTVL 115
PH N Y+ ++ + +SG++ M E P L L +T
Sbjct: 61 FPH-NDYE--DVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRK 117
Query: 116 VIVPEHVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPAEEGKAA 175
++ SE L QI+ +I FH Q I D EE AA
Sbjct: 118 IV-------SEGELDQLAQIRPLI-------FNFHEQTA-IKDC------LKILEEKTAA 156
Query: 176 PLYQQPLMIPQANHMAGISPSFLQQQNSSTETFIIVVPEQGTELTL-RLEEYV 227
Q M + ++ G S Q N + ++P T + L + ++Y+
Sbjct: 157 YDIMQEFMALELKNLPGEFNSGNQPSNREKNRYRDILPYDSTRVPLGKSKDYI 209
>gi|109138559 protein tyrosine phosphatase, non-receptor type 20A
isoform 2 [Homo sapiens]
Length = 226
Score = 35.0 bits (79), Expect = 0.057
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 7 LRSPRDSQTEPQNDNEG-----------ETSLATTQMNPPKRRQVEQGPSTGAKKPSISG 55
+ SPRD + EP ND EG ET +++Q N P+ + E ++ K S+
Sbjct: 1 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN 60
Query: 56 APHLNSYQSLELPQNQQDSGTEELM 80
PH N Y+ ++ + +SG++ M
Sbjct: 61 FPH-NDYE--DVFEEPSESGSDPSM 82
>gi|45243554 protein tyrosine phosphatase, non-receptor type 20
isoform 2 [Homo sapiens]
Length = 226
Score = 35.0 bits (79), Expect = 0.057
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Query: 7 LRSPRDSQTEPQNDNEG-----------ETSLATTQMNPPKRRQVEQGPSTGAKKPSISG 55
+ SPRD + EP ND EG ET +++Q N P+ + E ++ K S+
Sbjct: 1 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN 60
Query: 56 APHLNSYQSLELPQNQQDSGTEELM 80
PH N Y+ ++ + +SG++ M
Sbjct: 61 FPH-NDYE--DVFEEPSESGSDPSM 82
>gi|203097003 Rho GTPase activating protein 21 [Homo sapiens]
Length = 1958
Score = 34.3 bits (77), Expect = 0.097
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 38 RQVEQGPSTGAKKPSISGAPHLNSYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVI 97
+QVE G K PS+SGA + PQ+ +++GT +L + + Q + LSL+E
Sbjct: 675 QQVETG-----KSPSLSGA------SAKPAPQSSENAGTSDLELPVSQRNQ-DLSLQEA- 721
Query: 98 LILAPETVLQLTLENTVLVIVPEHVLRSEDGLQS--PVQIQYIIPSVDDFSLEFHAQDGD 155
ET TL+N VI+ E + G Q+ P++ Q I +V+D
Sbjct: 722 -----ETEQSDTLDNKEAVILRE---KPPSGRQTPQPLRHQSYILAVNDQETGSDTTCWL 773
Query: 156 ISDMRRENVPFSPAEEGKAA 175
+D RRE V EE KA+
Sbjct: 774 PNDARRE-VHIKRMEERKAS 792
>gi|222080055 MAP3K12 binding inhibitory protein 1 isoform 2 [Homo
sapiens]
Length = 343
Score = 33.9 bits (76), Expect = 0.13
Identities = 56/233 (24%), Positives = 96/233 (41%), Gaps = 37/233 (15%)
Query: 28 ATTQMNPPKR--RQVEQGPSTGAKKPSISGAPHLNSYQSLELPQNQQDSGTEELMIVLEQ 85
A T++N P R +E+ +P++S ++SL Q D + + I ++
Sbjct: 3 AATELNRPSSGDRNLER-----RCRPNLSREVLYEIFRSLHTLVGQLDLRDDVVKITIDW 57
Query: 86 GTEVRLS----------LEEVILILAPETV-LQLTL--ENTVLVIVPEHVLRSEDGLQSP 132
LS LE+ IL L P LQ + ENT V E + R+E G ++
Sbjct: 58 NKLQSLSAFQPALLFSALEQHILYLQPFLAKLQSPIKEENTTAV---EEIGRTEMGNKNE 114
Query: 133 VQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPA----EEGKA-------APLYQQP 181
V ++ S+ D E ++ D+ D+++ + F P + GKA A + ++
Sbjct: 115 VNDKF---SIGDLQEEEKHKESDLRDVKKTQIHFDPEVVQIKAGKAEIDRRISAFIERKQ 171
Query: 182 LMIPQANHMAGISPSFLQQQNSSTETFIIVVPEQGTELTLRLEEYVLILSPQT 234
I + N + Q+NS T I P G + +++ V PQT
Sbjct: 172 AEINENNVREFCNVIDCNQENSCARTDAIFTPYPGFKSHVKVSRVVNTYGPQT 224
>gi|222080053 MAP3K12 binding inhibitory protein 1 isoform 1 [Homo
sapiens]
Length = 344
Score = 33.9 bits (76), Expect = 0.13
Identities = 56/233 (24%), Positives = 96/233 (41%), Gaps = 37/233 (15%)
Query: 28 ATTQMNPPKR--RQVEQGPSTGAKKPSISGAPHLNSYQSLELPQNQQDSGTEELMIVLEQ 85
A T++N P R +E+ +P++S ++SL Q D + + I ++
Sbjct: 3 AATELNRPSSGDRNLER-----RCRPNLSREVLYEIFRSLHTLVGQLDLRDDVVKITIDW 57
Query: 86 GTEVRLS----------LEEVILILAPETV-LQLTL--ENTVLVIVPEHVLRSEDGLQSP 132
LS LE+ IL L P LQ + ENT V E + R+E G ++
Sbjct: 58 NKLQSLSAFQPALLFSALEQHILYLQPFLAKLQSPIKEENTTAV---EEIGRTEMGNKNE 114
Query: 133 VQIQYIIPSVDDFSLEFHAQDGDISDMRRENVPFSPA----EEGKA-------APLYQQP 181
V ++ S+ D E ++ D+ D+++ + F P + GKA A + ++
Sbjct: 115 VNDKF---SIGDLQEEEKHKESDLRDVKKTQIHFDPEVVQIKAGKAEIDRRISAFIERKQ 171
Query: 182 LMIPQANHMAGISPSFLQQQNSSTETFIIVVPEQGTELTLRLEEYVLILSPQT 234
I + N + Q+NS T I P G + +++ V PQT
Sbjct: 172 AEINENNVREFCNVIDCNQENSCARTDAIFTPYPGFKSHVKVSRVVNTYGPQT 224
>gi|66392146 RNA U, small nuclear RNA export adaptor
(phosphorylation regulated) [Homo sapiens]
Length = 394
Score = 33.1 bits (74), Expect = 0.22
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 4 YRRLRSPRDSQTEPQNDNEGETSLATTQMN-----PPKRRQVEQGPSTGAKKPSISGAPH 58
YR + S DS E +D++ ++ L + PPK + G S+ +KP ++G
Sbjct: 57 YRAVESV-DSSEESFSDSDDDSCLWKRKRQKCFNPPPKPEPFQFGQSS--QKPPVAGGKK 113
Query: 59 LNSYQSLELPQNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENT 113
+N+ L + QD+ EL I+ +GT R E L + + + + E+T
Sbjct: 114 INNIWGAVLQEQNQDAVATELGILGMEGTIDRSRQSETYNYLLAKKLRKESQEHT 168
>gi|239751846 PREDICTED: similar to hCG2036794 [Homo sapiens]
Length = 518
Score = 32.7 bits (73), Expect = 0.28
Identities = 22/82 (26%), Positives = 35/82 (42%)
Query: 12 DSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLNSYQSLELPQNQ 71
DS P +D+ G L Q + PK V + A P++ G P + +L PQ
Sbjct: 317 DSPKLPTSDSPGMVELKAPQNSGPKESNVPPPSARIAGPPALPGRPSQLAPATLRAPQRH 376
Query: 72 QDSGTEELMIVLEQGTEVRLSL 93
+IV+E+ E ++L
Sbjct: 377 SRGEGVNTIIVVERVKETGVTL 398
>gi|239746337 PREDICTED: similar to hCG2036794 [Homo sapiens]
Length = 518
Score = 32.7 bits (73), Expect = 0.28
Identities = 22/82 (26%), Positives = 35/82 (42%)
Query: 12 DSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLNSYQSLELPQNQ 71
DS P +D+ G L Q + PK V + A P++ G P + +L PQ
Sbjct: 317 DSPKLPTSDSPGMVELKAPQNSGPKESNVPPPSARIAGPPALPGRPSQLAPATLRAPQRH 376
Query: 72 QDSGTEELMIVLEQGTEVRLSL 93
+IV+E+ E ++L
Sbjct: 377 SRGEGVNTIIVVERVKETGVTL 398
>gi|58530876 melanoma antigen family C, 1 [Homo sapiens]
Length = 1142
Score = 32.0 bits (71), Expect = 0.48
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 119 PEHVLRSEDGLQSPVQIQYIIPSVDDF-----SLEFHAQDGDISDMRRENVPFSPAEEGK 173
P+ ED QSP+QI P DD S + ++ D SD P EGK
Sbjct: 22 PQSCPEGEDS-QSPLQIPQSSPESDDTLYPLQSPQSRSEGEDSSD------PLQRPPEGK 74
Query: 174 AAPLYQQPLMIPQANHMAGISPSFLQQQNSSTE 206
+ Q PL IPQ++ + S LQ SS E
Sbjct: 75 DS---QSPLQIPQSSPEGDDTQSPLQNSQSSPE 104
>gi|169213985 PREDICTED: similar to hCG2036794 [Homo sapiens]
Length = 518
Score = 31.6 bits (70), Expect = 0.63
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 12 DSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLNSYQSLELPQNQ 71
DS P +D+ G L Q + PK + A P++ G P + +L PQ
Sbjct: 317 DSPKLPTSDSPGMVELKAPQNSGPKESNAPPPSARIAGPPALPGRPSQLATATLRAPQRH 376
Query: 72 QDSGTEELMIVLEQGTEVRLSL 93
+IV+E+ E ++L
Sbjct: 377 SRGEGVNTIIVVERVKETGVTL 398
>gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens]
Length = 1884
Score = 31.2 bits (69), Expect = 0.82
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 3 GYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLNSY 62
GYR R+ R Q+EP+N + ETSL+ N R + +K S+ +S
Sbjct: 129 GYRN-RAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYIELGSDSS 187
Query: 63 QSLELPQNQQDSGTEELMIVLEQGTEVRLSLE 94
+ G +EL+ + QGT +SL+
Sbjct: 188 EDTVNKATYCSVGDQELLQITPQGTRDEISLD 219
>gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens]
Length = 699
Score = 31.2 bits (69), Expect = 0.82
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 3 GYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLNSY 62
GYR R+ R Q+EP+N + ETSL+ N R + +K S+ +S
Sbjct: 129 GYRN-RAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYIELGSDSS 187
Query: 63 QSLELPQNQQDSGTEELMIVLEQGTEVRLSLE 94
+ G +EL+ + QGT +SL+
Sbjct: 188 EDTVNKATYCSVGDQELLQITPQGTRDEISLD 219
>gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens]
Length = 759
Score = 31.2 bits (69), Expect = 0.82
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 3 GYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLNSY 62
GYR R+ R Q+EP+N + ETSL+ N R + +K S+ +S
Sbjct: 129 GYRN-RAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYIELGSDSS 187
Query: 63 QSLELPQNQQDSGTEELMIVLEQGTEVRLSLE 94
+ G +EL+ + QGT +SL+
Sbjct: 188 EDTVNKATYCSVGDQELLQITPQGTRDEISLD 219
>gi|237681121 breast cancer 1, early onset isoform 3 [Homo sapiens]
Length = 1816
Score = 31.2 bits (69), Expect = 0.82
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 3 GYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLNSY 62
GYR R+ R Q+EP+N + ETSL+ N R + +K S+ +S
Sbjct: 82 GYRN-RAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYIELGSDSS 140
Query: 63 QSLELPQNQQDSGTEELMIVLEQGTEVRLSLE 94
+ G +EL+ + QGT +SL+
Sbjct: 141 EDTVNKATYCSVGDQELLQITPQGTRDEISLD 172
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 31.2 bits (69), Expect = 0.82
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 3 GYRRLRSPRDSQTEPQNDNEGETSLATTQMNPPKRRQVEQGPSTGAKKPSISGAPHLNSY 62
GYR R+ R Q+EP+N + ETSL+ N R + +K S+ +S
Sbjct: 129 GYRN-RAKRLLQSEPENPSLQETSLSVQLSNLGTVRTLRTKQRIQPQKTSVYIELGSDSS 187
Query: 63 QSLELPQNQQDSGTEELMIVLEQGTEVRLSLE 94
+ G +EL+ + QGT +SL+
Sbjct: 188 EDTVNKATYCSVGDQELLQITPQGTRDEISLD 219
>gi|226528146 HRAS-like suppressor family, member 5 isoform 3
[Homo sapiens]
Length = 253
Score = 30.8 bits (68), Expect = 1.1
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 18/91 (19%)
Query: 22 EGETSLATTQMNPPKRRQVEQGPSTGAKK--PSI--SGAPH--LNSYQSLEL-------- 67
EGE +L ++ PP + + TG K P++ S PH LNS LEL
Sbjct: 8 EGEYALRLPRIPPPLPKPASRTAGTGPKDQPPALRRSAVPHSGLNSISPLELEESVGFAA 67
Query: 68 ----PQNQQDSGTEELMIVLEQGTEVRLSLE 94
P Q GT E ++QG + +SLE
Sbjct: 68 LVQLPAKQPPPGTLEQGRSIQQGEKAVVSLE 98
>gi|16905367 HRAS-like suppressor family, member 5 isoform 1 [Homo
sapiens]
Length = 279
Score = 30.8 bits (68), Expect = 1.1
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 18/91 (19%)
Query: 22 EGETSLATTQMNPPKRRQVEQGPSTGAKK--PSI--SGAPH--LNSYQSLEL-------- 67
EGE +L ++ PP + + TG K P++ S PH LNS LEL
Sbjct: 8 EGEYALRLPRIPPPLPKPASRTAGTGPKDQPPALRRSAVPHSGLNSISPLELEESVGFAA 67
Query: 68 ----PQNQQDSGTEELMIVLEQGTEVRLSLE 94
P Q GT E ++QG + +SLE
Sbjct: 68 LVQLPAKQPPPGTLEQGRSIQQGEKAVVSLE 98
>gi|14589951 DNA directed RNA polymerase II polypeptide E [Homo
sapiens]
Length = 210
Score = 30.8 bits (68), Expect = 1.1
Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 69 QNQQDSGTEELMIVLEQGTEVRLSLEEVILILAPETVLQLTLENTVLV------IVPEHV 122
Q Q+ +IV++QG + S ++ ++ +AP+ +L+ L+ +L+ +VPEHV
Sbjct: 92 QRMQEENITRALIVVQQG--MTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHV 149
Query: 123 LRSED 127
+ +++
Sbjct: 150 VMTKE 154
>gi|156119601 spermatogenesis and oogenesis specific basic
helix-loop-helix 1 isoform b [Homo sapiens]
Length = 328
Score = 30.0 bits (66), Expect = 1.8
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 34 PPKRRQVEQGPSTGAKKPSISGAPHLN----SYQSLELPQNQQDSGTEELMIVLEQGTE- 88
PPK V +GPS+ ++ IS S + L Q D E++ VLE +
Sbjct: 41 PPKAPTVAEGPSSCLRRNVISERERRKRMSLSCERLRALLPQFDGRREDMASVLEMSVQF 100
Query: 89 VRLSL-----EEVILILAP---------ETVLQLTLENTVLVIVPEHVLRSEDGLQSP 132
+RL+ +E ILA E VLQLTL + + VP+ + G ++P
Sbjct: 101 LRLASALGPSQEQHAILASSKEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASSGTRTP 158
>gi|156119603 spermatogenesis and oogenesis specific basic
helix-loop-helix 1 isoform a [Homo sapiens]
Length = 387
Score = 30.0 bits (66), Expect = 1.8
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 34 PPKRRQVEQGPSTGAKKPSISGAPHLN----SYQSLELPQNQQDSGTEELMIVLEQGTE- 88
PPK V +GPS+ ++ IS S + L Q D E++ VLE +
Sbjct: 41 PPKAPTVAEGPSSCLRRNVISERERRKRMSLSCERLRALLPQFDGRREDMASVLEMSVQF 100
Query: 89 VRLSL-----EEVILILAP---------ETVLQLTLENTVLVIVPEHVLRSEDGLQSP 132
+RL+ +E ILA E VLQLTL + + VP+ + G ++P
Sbjct: 101 LRLASALGPSQEQHAILASSKEMWHSLQEDVLQLTLSSQIQAGVPDPGTGASSGTRTP 158
>gi|226491950 HRAS-like suppressor family, member 5 isoform 2
[Homo sapiens]
Length = 269
Score = 29.6 bits (65), Expect = 2.4
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 22 EGETSLATTQMNPPKRRQVEQGPSTGAKK--PSI--SGAPHLNSYQS----LELPQNQQD 73
EGE +L ++ PP + + TG K P++ S PH ++LP Q
Sbjct: 8 EGEYALRLPRIPPPLPKPASRTAGTGPKDQPPALRRSAVPHSEESVGFAALVQLPAKQPP 67
Query: 74 SGTEELMIVLEQGTEVRLSLE 94
GT E ++QG + +SLE
Sbjct: 68 PGTLEQGRSIQQGEKAVVSLE 88
>gi|4505293 MYB-related protein B [Homo sapiens]
Length = 700
Score = 29.6 bits (65), Expect = 2.4
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 100 LAPETVLQLTLENTVLVIVPEHVLRSEDGLQSPVQIQYIIPSVDDFSLEFHAQDGDISDM 159
L E + ++ N+++ + H + + P Q ++PSV ++ L+ H
Sbjct: 330 LPEEPSAEDSINNSLVQLQASH----QQQVLPPRQPSALVPSVTEYRLDGHTISDLSRSS 385
Query: 160 RRENVPFSPAEEGKAAPLYQQPLMIP-QANHMAGISP--------SFLQQQNSST 205
R E +P SP+ E + + P ++ Q +SP SFL NS T
Sbjct: 386 RGELIPISPSTEVGGSGIGTPPSVLKRQRKRRVALSPVTENSTSLSFLDSCNSLT 440
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,482,680
Number of Sequences: 37866
Number of extensions: 448178
Number of successful extensions: 1212
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1178
Number of HSP's gapped (non-prelim): 48
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.