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Search of human proteins with 169168972
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169168972 PREDICTED: hypothetical protein [Homo sapiens]
(84 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169168972 PREDICTED: hypothetical protein [Homo sapiens] 185 8e-48
gi|169168657 PREDICTED: hypothetical protein [Homo sapiens] 182 4e-47
gi|169169603 PREDICTED: hypothetical protein [Homo sapiens] 182 4e-47
gi|110431364 GLIS family zinc finger 2 [Homo sapiens] 30 0.41
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 29 0.70
gi|149274653 patched domain containing 2 [Homo sapiens] 29 0.70
gi|4557291 autoimmune regulator isoform 1 [Homo sapiens] 28 1.2
gi|4557293 autoimmune regulator isoform 2 [Homo sapiens] 28 1.2
gi|169172033 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|169170051 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239509128 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|51173727 Sma- and Mad-related protein 1 [Homo sapiens] 28 1.6
gi|5174509 Sma- and Mad-related protein 1 [Homo sapiens] 28 1.6
gi|61676102 zinc finger protein 789 isoform 1 [Homo sapiens] 28 2.0
gi|49472835 bridging integrator 2 [Homo sapiens] 28 2.0
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 27 2.7
gi|239753965 PREDICTED: zinc finger, DHHC-type containing 11B [H... 27 2.7
gi|113411427 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|31581524 cordon-bleu homolog [Homo sapiens] 27 2.7
gi|47778931 SMAD, mothers against DPP homolog 5 [Homo sapiens] 27 3.5
gi|47778929 SMAD, mothers against DPP homolog 5 [Homo sapiens] 27 3.5
gi|47778925 SMAD, mothers against DPP homolog 5 [Homo sapiens] 27 3.5
gi|124430752 kinesin family member 26B [Homo sapiens] 27 3.5
gi|61966733 hypothetical protein LOC388199 [Homo sapiens] 27 3.5
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 27 4.5
gi|169211238 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239754957 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|169211629 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 27 4.5
gi|169210797 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
>gi|169168972 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 185 bits (469), Expect = 8e-48
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MKMSNRVSDTLQKHQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDC 60
MKMSNRVSDTLQKHQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDC
Sbjct: 1 MKMSNRVSDTLQKHQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDC 60
Query: 61 LGLTLAWKVWAQDSELKSVCSPNP 84
LGLTLAWKVWAQDSELKSVCSPNP
Sbjct: 61 LGLTLAWKVWAQDSELKSVCSPNP 84
>gi|169168657 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 182 bits (463), Expect = 4e-47
Identities = 83/84 (98%), Positives = 83/84 (98%)
Query: 1 MKMSNRVSDTLQKHQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDC 60
MKMSNRVSDTLQKHQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPN DC
Sbjct: 1 MKMSNRVSDTLQKHQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNLDC 60
Query: 61 LGLTLAWKVWAQDSELKSVCSPNP 84
LGLTLAWKVWAQDSELKSVCSPNP
Sbjct: 61 LGLTLAWKVWAQDSELKSVCSPNP 84
>gi|169169603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 182 bits (463), Expect = 4e-47
Identities = 83/84 (98%), Positives = 83/84 (98%)
Query: 1 MKMSNRVSDTLQKHQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDC 60
MKMSNRVSDTLQKHQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPN DC
Sbjct: 1 MKMSNRVSDTLQKHQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNLDC 60
Query: 61 LGLTLAWKVWAQDSELKSVCSPNP 84
LGLTLAWKVWAQDSELKSVCSPNP
Sbjct: 61 LGLTLAWKVWAQDSELKSVCSPNP 84
>gi|110431364 GLIS family zinc finger 2 [Homo sapiens]
Length = 524
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 20 FPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCLG 62
F P P LPLPL+PG LDL G G GS +G
Sbjct: 362 FGGPGLPGLPLPLAPGP-----LDLSALACGNGGGSGGGGGMG 399
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 21 PWPSQPNLPLPLSPGDDNGWGLDLPRSG--NGEGTGSPNSDCLG 62
P P P PLP PGD + WG G + G GS C G
Sbjct: 1266 PQPQPPPPPLP-QPGDKSSWGRTRSLGGLISAVGVGSTGGGCGG 1308
>gi|149274653 patched domain containing 2 [Homo sapiens]
Length = 1392
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 3 MSNRVSDTLQKHQRRSSFPWPSQPNLPLPLSPG 35
+ N + +L+K +R S PW S+P L PG
Sbjct: 797 LQNNIRTSLEKKRRGSGVPWASRPEATLQDFPG 829
>gi|4557291 autoimmune regulator isoform 1 [Homo sapiens]
Length = 545
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 2 KMSNRVSDTLQKHQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCL 61
+ S+ + T+Q+ Q R+ P P +P + PL PG RS E G P
Sbjct: 336 RCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPG---------LRSAGEEVRGPPGEPLA 386
Query: 62 GL--TLAWK 68
G+ TL +K
Sbjct: 387 GMDTTLVYK 395
>gi|4557293 autoimmune regulator isoform 2 [Homo sapiens]
Length = 348
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 2 KMSNRVSDTLQKHQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCL 61
+ S+ + T+Q+ Q R+ P P +P + PL PG RS E G P
Sbjct: 139 RCSSCLQATVQEVQPRAEEPRPQEPPVETPLPPG---------LRSAGEEVRGPPGEPLA 189
Query: 62 GL--TLAWK 68
G+ TL +K
Sbjct: 190 GMDTTLVYK 198
>gi|169172033 PREDICTED: hypothetical protein [Homo sapiens]
Length = 116
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 29 PLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCLGLTLAWKV 69
PLP+ G +GWG + R G G SP T AW+V
Sbjct: 56 PLPICSGPGDGWGDPIARPGRGNNL-SPG------TSAWEV 89
>gi|169170051 PREDICTED: hypothetical protein [Homo sapiens]
Length = 116
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 29 PLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCLGLTLAWKV 69
PLP+ G +GWG + R G G SP T AW+V
Sbjct: 56 PLPICSGPGDGWGDPIARPGRGNNL-SPG------TSAWEV 89
>gi|239509128 PREDICTED: hypothetical protein [Homo sapiens]
Length = 116
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 29 PLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCLGLTLAWKV 69
PLP+ G +GWG + R G G SP T AW+V
Sbjct: 56 PLPICSGPGDGWGDPIARPGRGNNL-SPG------TSAWEV 89
>gi|51173727 Sma- and Mad-related protein 1 [Homo sapiens]
Length = 465
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 15 QRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSP 56
Q+ +S P+P PN P SPG + P S GSP
Sbjct: 177 QQPNSHPFPHSPNSSYPNSPGSSSS---TYPHSPTSSDPGSP 215
>gi|5174509 Sma- and Mad-related protein 1 [Homo sapiens]
Length = 465
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 15 QRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSP 56
Q+ +S P+P PN P SPG + P S GSP
Sbjct: 177 QQPNSHPFPHSPNSSYPNSPGSSSS---TYPHSPTSSDPGSP 215
>gi|61676102 zinc finger protein 789 isoform 1 [Homo sapiens]
Length = 425
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 37 DNGWGLDLPRSGNGEGTGS 55
D W LDLPR+GN + +GS
Sbjct: 67 DEQWILDLPRTGNRKASGS 85
>gi|49472835 bridging integrator 2 [Homo sapiens]
Length = 565
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 16 RRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNS 58
R ++ P PS N+P SP G PR+ G GT SP +
Sbjct: 421 RATASPRPSSGNIPS--SPTASGGGSPTSPRASLGTGTASPRT 461
>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
sapiens]
Length = 1833
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 21 PWPSQPNLPLPLSPGDDNGWGLDLPRS-GNGEGT-GSPNSDCLG 62
P P +PNLP P++ + W P + NG G PN G
Sbjct: 918 PAPREPNLPTPMTSKSASVWSKSTPPAPDNGTSAWGEPNESSPG 961
>gi|239753965 PREDICTED: zinc finger, DHHC-type containing 11B [Homo
sapiens]
Length = 573
Score = 27.3 bits (59), Expect = 2.7
Identities = 30/110 (27%), Positives = 40/110 (36%), Gaps = 33/110 (30%)
Query: 6 RVSDTLQKH-------------QRRSSFPW------------PSQPNL------PLPLSP 34
RV TL+ H Q SFPW PS N+ PL +S
Sbjct: 119 RVLHTLESHFLLPLGSGQGQILQHVCSFPWTGPCTDSSPTPAPSAGNVAPGNAGPLAVSA 178
Query: 35 GDDNGWGLDLPRSGNGEGTGSPNSDCLGLTLAWKVWAQDSELKSVCSPNP 84
G G + PR G G P+ + + L + V +D+ S CS P
Sbjct: 179 GP--GGHVPSPRGLPDSGWGRPSPELMAQVLPFCVLQRDTRSGSQCSVTP 226
>gi|113411427 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 29 PLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCLGLTLAWKVWA 71
P PLSP G G + PRS GT LG T WK A
Sbjct: 118 PPPLSPLRKPG-GSNQPRSAAAAGTQEACLQALGTTWGWKYHA 159
>gi|31581524 cordon-bleu homolog [Homo sapiens]
Length = 1261
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 11 LQKHQRRSSFPWPSQPNLPLPLSP 34
LQK +RR+ P P QP P PL P
Sbjct: 328 LQKKKRRAPAPPPPQPPPPSPLIP 351
>gi|47778931 SMAD, mothers against DPP homolog 5 [Homo sapiens]
Length = 465
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 14 HQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSP 56
HQ ++ P+P PN P P SP P S G GSP
Sbjct: 178 HQPNNT-PFPLSPNSPYPPSPASST-----YPNSPASSGPGSP 214
>gi|47778929 SMAD, mothers against DPP homolog 5 [Homo sapiens]
Length = 465
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 14 HQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSP 56
HQ ++ P+P PN P P SP P S G GSP
Sbjct: 178 HQPNNT-PFPLSPNSPYPPSPASST-----YPNSPASSGPGSP 214
>gi|47778925 SMAD, mothers against DPP homolog 5 [Homo sapiens]
Length = 465
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 14 HQRRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSP 56
HQ ++ P+P PN P P SP P S G GSP
Sbjct: 178 HQPNNT-PFPLSPNSPYPPSPASST-----YPNSPASSGPGSP 214
>gi|124430752 kinesin family member 26B [Homo sapiens]
Length = 2108
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 21 PWPSQPNLPL--PLSPGDDNGWGLDLPRSGNGEGTGSPNSD 59
P P+ P + P S G G+G P SG+G G+ SP SD
Sbjct: 85 PGPASPGIGTSSPGSLGGSPGFGTGSPGSGSGGGS-SPGSD 124
>gi|61966733 hypothetical protein LOC388199 [Homo sapiens]
Length = 402
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 16 RRSSFPWPSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCLGLTLAW 67
RR++ P P P PLP PG G PRS GSP L +T W
Sbjct: 351 RRTASPEPPAPGAPLPACPGRIPGAARFGPRSC---PLGSP--AVLAVTTGW 397
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 23 PSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCLGLTLAWKVWAQDSEL 76
P+ P P P + G G+ +P G G G L WKV+ + S L
Sbjct: 317 PATPVAPAPSADGSAAPAGVGVPPPATGGGDGP-----FACPLCWKVFKKPSHL 365
>gi|169211238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 55 SPNSDCLGLTLAWKVWAQDSELKSVCSPNP 84
SP + CLG A+ V + S ++ V +P P
Sbjct: 26 SPGTQCLGPVAAFTVGSSGSPIRRVTAPGP 55
>gi|239754957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 28 LPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCL 61
L L L G+ G DLP SGNG G G+ C+
Sbjct: 62 LCLHLKAGEQRG---DLPGSGNGTGKGAEVGVCV 92
>gi|169211629 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 55 SPNSDCLGLTLAWKVWAQDSELKSVCSPNP 84
SP + CLG A+ V + S ++ V +P P
Sbjct: 26 SPGTQCLGPVAAFTVGSSGSPIRRVTAPGP 55
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 23 PSQPNLPLPLSPGDDNGWGLDLPRSGNGEGTGSPNSDCLGLTLAWKVWAQDSEL 76
P+ P P P + G G+ +P G G G L WKV+ + S L
Sbjct: 317 PATPVAPAPSADGSAAPAGVGVPPPATGGGDGP-----FACPLCWKVFKKPSHL 365
>gi|169210797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 55 SPNSDCLGLTLAWKVWAQDSELKSVCSPNP 84
SP + CLG A+ V + S ++ V +P P
Sbjct: 26 SPGTQCLGPVAAFTVGSSGSPIRRVTAPGP 55
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.132 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,604,350
Number of Sequences: 37866
Number of extensions: 253493
Number of successful extensions: 550
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 46
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.