Guide to the Human Genome
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Name: LOC100132526 Sequence: fasta or formatted (176aa) NCBI GI: 169165807
Description:

PREDICTED: similar to FLJ00274 protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {176aa} PREDICTED: similar to FLJ00274 protein
alt mRNA {176aa} PREDICTED: similar to FLJ00274 protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         11           3
 C cysteine            4.0          7           1
 D aspartate           5.7         10           2
 E glutamate          14.8         26           3
 F phenylalanine       3.4          6           2
 G glycine             9.1         16           2
 H histidine           1.1          2           1
 I isoleucine          1.7          3           1
 K lysine              4.0          7           1
 L leucine             8.5         15           2
 M methionine          2.3          4           1
 N asparagine          3.4          6           2
 P proline             7.4         13           1
 Q glutamine           4.5          8           1
 R arginine            1.1          2           1
 S serine              7.4         13           1
 T threonine           4.5          8           1
 V valine              9.7         17           3
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to FLJ00274 protein 
LOC100132526          1.000   PREDICTED: similar to FLJ00274 protein 
LOC100132526          1.000   PREDICTED: similar to FLJ00274 protein 
FGD5                  0.713   FYVE, RhoGEF and PH domain containing 5 
TRIOBP                0.018   TRIO and F-actin binding protein isoform 6 
SMARCAL1              0.015   SWI/SNF-related matrix-associated actin-dependent re...
SMARCAL1              0.015   SWI/SNF-related matrix-associated actin-dependent r...
WAPAL                 0.015   wings apart-like homolog 
ITGB4                 0.015   integrin beta 4 isoform 2 precursor 
ITGB4                 0.015   integrin beta 4 isoform 1 precursor 
ITGB4                 0.015   integrin beta 4 isoform 3 precursor 
FAM13C                0.012   hypothetical protein LOC220965 isoform 1 
FAM13C                0.012   hypothetical protein LOC220965 isoform 2 
ARHGEF11              0.009   Rho guanine nucleotide exchange factor (GEF) 11 isof...
ARHGEF11              0.009   Rho guanine nucleotide exchange factor (GEF) 11 isofo...
PCDH9                 0.009   protocadherin 9 isoform 2 precursor 
PCDH9                 0.009   protocadherin 9 isoform 1 precursor 
RP1L1                 0.009   retinitis pigmentosa 1-like 1 
RYR1                  0.009   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.009   skeletal muscle ryanodine receptor isoform 1 
KDM3A                 0.009   jumonji domain containing 1A 
KDM3A                 0.009   jumonji domain containing 1A 
AUTS2                 0.009   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.009   autism susceptibility candidate 2 isoform 1 
FBXO40                0.009   F-box protein 40 
LOC100291671          0.006   PREDICTED: similar to SH3-binding domain and glutam...
AKAP9                 0.006   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.006   A-kinase anchor protein 9 isoform 3 
SDCCAG1               0.006   serologically defined colon cancer antigen 1 
TSPYL2                0.006   TSPY-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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