Guide to the Human Genome
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Name: FAM13C Sequence: fasta or formatted (585aa) NCBI GI: 50897856
Description:

hypothetical protein LOC220965 isoform 1

Referenced in:

Rho and Rac

Other entries for this name:
alt prot [502aa] hypothetical protein LOC220965 isoform 3
alt prot [487aa] hypothetical protein LOC220965 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         35           2
 C cysteine            1.9         11           1
 D aspartate           6.7         39           1
 E glutamate           9.9         58           3
 F phenylalanine       2.7         16           2
 G glycine             3.8         22           1
 H histidine           2.7         16           1
 I isoleucine          3.1         18           2
 K lysine              7.7         45           2
 L leucine             8.2         48           2
 M methionine          1.4          8           2
 N asparagine          3.2         19           2
 P proline             8.7         51           2
 Q glutamine           6.7         39           3
 R arginine            5.8         34           2
 S serine             10.1         59           3
 T threonine           5.3         31           2
 V valine              4.3         25           2
 W tryptophan          0.3          2           1
 Y tyrosine            1.5          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC220965 isoform 1 
FAM13C                0.851   hypothetical protein LOC220965 isoform 3 
FAM13C                0.536   hypothetical protein LOC220965 isoform 2 
FAM13A                0.226   family with sequence similarity 13, member A1 isofor...
FAM13A                0.226   family with sequence similarity 13, member A1 isofor...
FAM13B                0.188   hypothetical protein LOC51306 isoform 2 
FAM13B                0.187   hypothetical protein LOC51306 isoform 3 
FAM13B                0.175   hypothetical protein LOC51306 isoform 1 
PCLO                  0.017   piccolo isoform 2 
PCLO                  0.017   piccolo isoform 1 
KDM2B                 0.015   F-box and leucine-rich repeat protein 10 isoform b [...
CEP164                0.014   centrosomal protein 164kDa 
SRRM2                 0.013   splicing coactivator subunit SRm300 
AFF1                  0.012   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
DPCR1                 0.012   diffuse panbronchiolitis critical region 1 protein ...
EIF5B                 0.012   eukaryotic translation initiation factor 5B 
TTC28                 0.011   tetratricopeptide repeat domain 28 
C1orf113              0.011   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.011   SH3 domain-containing protein C1orf113 isoform 2 [H...
C15orf27              0.011   hypothetical protein LOC123591 
LOC100294236          0.011   PREDICTED: similar to diffuse panbronchiolitis crit...
IFT74                 0.011   coiled-coil domain containing 2 isoform b 
IFT74                 0.011   coiled-coil domain containing 2 isoform a 
IFT74                 0.011   coiled-coil domain containing 2 isoform a 
IFT74                 0.011   coiled-coil domain containing 2 isoform a 
DSP                   0.010   desmoplakin isoform II 
DMP1                  0.010   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.010   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
LOC147646             0.010   PREDICTED: hypothetical protein 
LOC147646             0.010   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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