Guide to the Human Genome
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Name: LOC100129434 Sequence: fasta or formatted (173aa) NCBI GI: 169164134
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {173aa} PREDICTED: hypothetical protein
alt prot {173aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         23           8
 C cysteine            3.5          6           1
 D aspartate           2.3          4           1
 E glutamate           4.0          7           2
 F phenylalanine       2.3          4           1
 G glycine             6.4         11           2
 H histidine           1.7          3           1
 I isoleucine          2.9          5           1
 K lysine              4.6          8           2
 L leucine            12.1         21           2
 M methionine          1.2          2           1
 N asparagine          1.2          2           1
 P proline             6.9         12           2
 Q glutamine           3.5          6           1
 R arginine            7.5         13           3
 S serine             13.3         23           5
 T threonine           6.4         11           2
 V valine              2.9          5           1
 W tryptophan          2.9          5           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129434          1.000   PREDICTED: hypothetical protein 
LOC100129434          0.991   PREDICTED: hypothetical protein 
MSH3                  0.031   mutS homolog 3 
ZFP36L2               0.028   zinc finger protein 36, C3H type-like 2 
DGKH                  0.021   diacylglycerol kinase, eta isoform 1 
DGKH                  0.021   diacylglycerol kinase, eta isoform 2 
LOC100133142          0.021   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.021   PREDICTED: similar to zinc finger protein 208 [Homo...
TNRC18                0.021   trinucleotide repeat containing 18 
EOMES                 0.018   eomesodermin 
PHOX2B                0.018   paired-like homeobox 2b 
ARX                   0.015   aristaless related homeobox 
DGKI                  0.015   diacylglycerol kinase, iota 
ANO7                  0.015   transmembrane protein 16G isoform NGEP long 
SRRM2                 0.015   splicing coactivator subunit SRm300 
TMEM151B              0.015   transmembrane protein 151B 
GJD4                  0.015   connexin40.1 
KNDC1                 0.015   kinase non-catalytic C-lobe domain (KIND) containin...
ARID1B                0.015   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.015   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.015   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
ELN                   0.012   elastin isoform e precursor 
ELN                   0.012   elastin isoform d precursor 
ELN                   0.012   elastin isoform c precursor 
ELN                   0.012   elastin isoform b precursor 
ELN                   0.012   elastin isoform a precursor 
IRX3                  0.012   iroquois homeobox 3 
ZSWIM6                0.012   zinc finger, SWIM-type containing 6 
CACNA1I               0.012   calcium channel, voltage-dependent, T type, alpha 1I...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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