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Search of human proteins with 11067751
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11067751 interferon, alpha 2 [Homo sapiens]
(188 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11067751 interferon, alpha 2 [Homo sapiens] 374 e-104
gi|4504597 interferon, alpha 5 [Homo sapiens] 315 1e-86
gi|11128015 interferon, alpha 6 [Homo sapiens] 315 1e-86
gi|170763491 interferon, alpha 14 [Homo sapiens] 309 8e-85
gi|10835103 interferon, alpha 4 [Homo sapiens] 305 2e-83
gi|194394174 interferon, alpha 13 precursor [Homo sapiens] 303 7e-83
gi|13128950 interferon, alpha 1 [Homo sapiens] 301 2e-82
gi|10880985 interferon, alpha 17 [Homo sapiens] 300 4e-82
gi|169791013 interferon, alpha 21 [Homo sapiens] 300 6e-82
gi|4504593 interferon, alpha 16 [Homo sapiens] 299 8e-82
gi|4504589 interferon, alpha 10 [Homo sapiens] 299 1e-81
gi|42476083 interferon, alpha 8 [Homo sapiens] 294 3e-80
gi|71143135 interferon, alpha 7 [Homo sapiens] 290 4e-79
gi|4504605 interferon, omega 1 [Homo sapiens] 214 4e-56
gi|28882045 interferon, epsilon [Homo sapiens] 102 2e-22
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens] 98 4e-21
gi|112789564 interferon kappa precursor [Homo sapiens] 71 5e-13
gi|37675283 adaptor-related protein complex 4, epsilon 1 subunit... 30 1.2
gi|40795665 ubiquitin specific protease 4 isoform a [Homo sapiens] 29 2.1
gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens] 29 2.1
>gi|11067751 interferon, alpha 2 [Homo sapiens]
Length = 188
Score = 374 bits (960), Expect = e-104
Identities = 188/188 (100%), Positives = 188/188 (100%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
Sbjct: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
Query: 61 FPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEA 120
FPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEA
Sbjct: 61 FPQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEA 120
Query: 121 CVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNL 180
CVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNL
Sbjct: 121 CVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTNL 180
Query: 181 QESLRSKE 188
QESLRSKE
Sbjct: 181 QESLRSKE 188
>gi|4504597 interferon, alpha 5 [Homo sapiens]
Length = 189
Score = 315 bits (808), Expect = 1e-86
Identities = 158/189 (83%), Positives = 169/189 (89%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MAL F LL+AL+VL+CKS CS+GCDLPQTHSL +RRTLM++AQM RIS FSCLKDRHDFG
Sbjct: 1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
Query: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
FPQEEF GNQFQKA+ I VLHEMIQQ FNLFSTKDSSA WDETLLDKFYTELYQQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
AC++Q VGV +TPLM DSIL VRKYFQRITLYL EKKYSPCAWEVVRAEIMRSFSLS N
Sbjct: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
Query: 180 LQESLRSKE 188
LQE LR KE
Sbjct: 181 LQERLRRKE 189
>gi|11128015 interferon, alpha 6 [Homo sapiens]
Length = 189
Score = 315 bits (807), Expect = 1e-86
Identities = 162/189 (85%), Positives = 168/189 (88%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MAL FALL+AL+VLSCKSSCS+ CDLPQTHSLG RRT+MLLAQMRRISLFSCLKDRHDF
Sbjct: 1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
Query: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
FPQEEF GNQFQKAE I VLHE+IQQ FNLFSTKDSS AWDE LLDK YTELYQQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
ACV+Q V V TPLM EDSILAVRKYFQRITLYL EKKYSPCAWEVVRAEIMRSFS S N
Sbjct: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
Query: 180 LQESLRSKE 188
LQE LR KE
Sbjct: 181 LQERLRRKE 189
>gi|170763491 interferon, alpha 14 [Homo sapiens]
Length = 189
Score = 309 bits (792), Expect = 8e-85
Identities = 155/189 (82%), Positives = 171/189 (90%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MAL FAL++AL+VLSCKSSCS+GC+L QTHSL +RRTLML+AQMRRIS FSCLKDRHDF
Sbjct: 1 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
Query: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
FPQEEF GNQFQKA+ I VLHEM+QQ FNLFSTK+SSAAWDETLL+KFY EL+QQ+NDLE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
ACVIQ VGV ETPLM EDSILAV+KYFQRITLYL EKKYSPCAWEVVRAEIMRS S STN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 180 LQESLRSKE 188
LQ+ LR K+
Sbjct: 181 LQKRLRRKD 189
>gi|10835103 interferon, alpha 4 [Homo sapiens]
Length = 189
Score = 305 bits (780), Expect = 2e-83
Identities = 154/189 (81%), Positives = 171/189 (90%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MAL+F+LL+A+LVLS KS CS+GCDLPQTHSLG+RR L+LLAQM RIS FSCLKDRHDFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 60
Query: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
FP+EEF G+QFQKA+ I VLHEMIQQ FNLFST+DSSAAW+++LL+KF TELYQQLNDLE
Sbjct: 61 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
ACVIQ VGV ETPLM EDSILAVRKYFQRITLYL EKKYSPCAWEVVRAEIMRS S STN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 180 LQESLRSKE 188
LQ+ LR K+
Sbjct: 181 LQKRLRRKD 189
>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
Length = 190
Score = 303 bits (775), Expect = 7e-83
Identities = 156/189 (82%), Positives = 166/189 (87%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MA FALL+AL+VLSCKSSCS+GCDLP+THSL +RRTLMLLAQM RIS SCL DRHDFG
Sbjct: 2 MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
Query: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
FPQEEF GNQFQKA I VLHE+IQQIFNLF+TKDSSAAWDE LLDKF TELYQQLNDLE
Sbjct: 62 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
ACV+Q V ETPLM DSILAV+KYF+RITLYL EKKYSPCAWEVVRAEIMRS SLSTN
Sbjct: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
Query: 180 LQESLRSKE 188
LQE LR KE
Sbjct: 182 LQERLRRKE 190
>gi|13128950 interferon, alpha 1 [Homo sapiens]
Length = 189
Score = 301 bits (771), Expect = 2e-82
Identities = 155/189 (82%), Positives = 165/189 (87%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MA FALL+ L+VLSCKSSCS+GCDLP+THSL +RRTLMLLAQM RIS SCL DRHDFG
Sbjct: 1 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 60
Query: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
FPQEEF GNQFQKA I VLHE+IQQIFNLF+TKDSSAAWDE LLDKF TELYQQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 120
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
ACV+Q V ETPLM DSILAV+KYF+RITLYL EKKYSPCAWEVVRAEIMRS SLSTN
Sbjct: 121 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 180
Query: 180 LQESLRSKE 188
LQE LR KE
Sbjct: 181 LQERLRRKE 189
>gi|10880985 interferon, alpha 17 [Homo sapiens]
Length = 189
Score = 300 bits (769), Expect = 4e-82
Identities = 152/189 (80%), Positives = 169/189 (89%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MAL+F+LL+A+LVLS KS CS+GCDLPQTHSLG+RR L+LLAQM RIS FSCLKDRHDFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
Query: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
PQEEF GNQFQK + I VLHEMIQQ FNLFST+DSSAAW+++LL+KF TELYQQLN+LE
Sbjct: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
ACVIQ VG+ ETPLM EDSILAVRKYFQRITLYL EKKYSPCAWEVVRAEIMRS S STN
Sbjct: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 180 LQESLRSKE 188
LQ+ LR K+
Sbjct: 181 LQKILRRKD 189
>gi|169791013 interferon, alpha 21 [Homo sapiens]
Length = 189
Score = 300 bits (767), Expect = 6e-82
Identities = 154/189 (81%), Positives = 167/189 (88%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MAL+F+LL+A+LVLS KS CS+GCDLPQTHSLG+RR L+LLAQM RIS FSCLKDRHDFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
Query: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
FPQEEF GNQFQKA+ I VLHEMIQQ FNLFSTKDSSA W+++LL+KF TEL QQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
ACVIQ VGV ETPLM DSILAV+KYFQRITLYL EKKYSPCAWEVVRAEIMRSFSLS
Sbjct: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
Query: 180 LQESLRSKE 188
QE LR KE
Sbjct: 181 FQERLRRKE 189
>gi|4504593 interferon, alpha 16 [Homo sapiens]
Length = 189
Score = 299 bits (766), Expect = 8e-82
Identities = 153/189 (80%), Positives = 165/189 (87%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MAL+F+LL+A+LVLS KS CS+GCDLPQTHSLG+RR L+LLAQM RIS FSCLKDR+DFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
Query: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
FPQE F GNQFQKA+ I HEMIQQ FNLFSTKDSSAAWDETLLDKFY EL+QQLNDLE
Sbjct: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
ACV Q VGV E LM EDSILAVRKYFQRITLYL KKYSPCAWEVVRAEIMRSFS STN
Sbjct: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
Query: 180 LQESLRSKE 188
LQ+ LR K+
Sbjct: 181 LQKGLRRKD 189
>gi|4504589 interferon, alpha 10 [Homo sapiens]
Length = 189
Score = 299 bits (765), Expect = 1e-81
Identities = 152/189 (80%), Positives = 168/189 (88%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MAL+F+LL+A+LVLS KS CS+GCDLPQTHSLG+RR L+LL QM RIS FSCLKDRHDF
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
Query: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
PQEEF GNQFQKA+ I VLHEMIQQ FNLFST+DSSAAW+++LL+KF TELYQQLNDLE
Sbjct: 61 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
ACVIQ VGV ETPLM EDSILAVRKYFQRITLYL E+KYSPCAWEVVRAEIMRS S STN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 180 LQESLRSKE 188
LQ+ LR K+
Sbjct: 181 LQKRLRRKD 189
>gi|42476083 interferon, alpha 8 [Homo sapiens]
Length = 189
Score = 294 bits (753), Expect = 3e-80
Identities = 155/189 (82%), Positives = 167/189 (88%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MALTF LLVAL+VLS KS S+GCDLPQTHSLG+RR L+LLAQMRRIS FSCLKDRHDF
Sbjct: 1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
Query: 61 FPQEEFGN-QFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
FPQEEF + QFQKA+ I VLHEMIQQ FNLFSTKDSSAA DETLLD+FY EL QQLNDLE
Sbjct: 61 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
+CV+Q VGV E+PLM EDSILAVRKYFQRITLYL EKKYS CAWEVVRAEIMRSFSLS N
Sbjct: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
Query: 180 LQESLRSKE 188
LQ+ L+SKE
Sbjct: 181 LQKRLKSKE 189
>gi|71143135 interferon, alpha 7 [Homo sapiens]
Length = 189
Score = 290 bits (743), Expect = 4e-79
Identities = 147/189 (77%), Positives = 166/189 (87%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MA +F+LL+ +LVLS KS CS+GCDLPQTHSL +RR L+LLAQM RIS FSCLKDRH+F
Sbjct: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
Query: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
FP+EEF G+QFQK + I VLHEMIQQ FNLFST+DSSAAW+++LL+KF TELYQQLNDLE
Sbjct: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
ACVIQ VGV ETPLM ED ILAVRKYFQRITLYL EKKYSPCAWEVVRAEIMRSFS STN
Sbjct: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
Query: 180 LQESLRSKE 188
L++ LR K+
Sbjct: 181 LKKGLRRKD 189
>gi|4504605 interferon, omega 1 [Homo sapiens]
Length = 195
Score = 214 bits (545), Expect = 4e-56
Identities = 115/189 (60%), Positives = 137/189 (72%), Gaps = 1/189 (0%)
Query: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
MAL F LL AL++ S S+GCDLPQ H L SR TL+LL QMRRIS F CLKDR DF
Sbjct: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
Query: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
FPQE G+Q QKA + VLHEM+QQIF+LF T+ SSAAW+ TLLD+ +T L+QQL LE
Sbjct: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
Query: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
C++Q VG E+ L +R+YFQ I +YLKEKKYS CAWEVVR EIM+S LSTN
Sbjct: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
Query: 180 LQESLRSKE 188
+QE LRSK+
Sbjct: 181 MQERLRSKD 189
>gi|28882045 interferon, epsilon [Homo sapiens]
Length = 208
Score = 102 bits (254), Expect = 2e-22
Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Query: 34 SRRTLMLLAQMRRISLFSCLKDRHDFGFPQEEFG-NQFQKAETIPVLHEMIQQIFNLFST 92
++ +L LL +++ +S+ CL R +F PQ+ Q+QK T+ +LHEM+QQIF+LF
Sbjct: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
Query: 93 KDSSAAWDETLLDKFYTELYQQLNDLEACVIQGVGVTETPLMKEDSILAVRKYFQRITLY 152
S W+E +KF +L+QQL LEA + L ++ L V+ YF+RI Y
Sbjct: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
Query: 153 LKEKKYSPCAWEVVRAEIMRSFSLSTNLQESL 184
L+ + YS CAW +V+ EI R +L E L
Sbjct: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKL 186
>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
Length = 187
Score = 98.2 bits (243), Expect = 4e-21
Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 15/143 (10%)
Query: 52 CLKDRHDFGFPQE-EFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTE 110
CLKDR +F P+E + QFQK + ++EM+Q IF +F SS W+ET+++
Sbjct: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
Query: 111 LYQQLNDLEACVIQGVGVTETPLMKED-------SILAVRKYFQRITLYLKEKKYSPCAW 163
+Y Q+N L+ V E L KED S L +++Y+ RI YLK K+YS CAW
Sbjct: 112 VYHQINHLKT-------VLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAW 164
Query: 164 EVVRAEIMRSFSLSTNLQESLRS 186
+VR EI+R+F L LR+
Sbjct: 165 TIVRVEILRNFYFINRLTGYLRN 187
>gi|112789564 interferon kappa precursor [Homo sapiens]
Length = 207
Score = 71.2 bits (173), Expect = 5e-13
Identities = 59/180 (32%), Positives = 82/180 (45%), Gaps = 16/180 (8%)
Query: 8 LVALLVLSCKSSCSVGCDLPQTHSLG-SRRTLMLLAQMRRISLFSCLKDRHDFGFPQEEF 66
L L+ + + S+ C+L H + + L L+ M CL++ F PQE
Sbjct: 14 LEILMGIFIAGTLSLDCNLLNVHLRRVTWQNLRHLSSMSNSFPVECLRENIAFELPQEFL 73
Query: 67 G-NQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEACVIQG 125
Q K + +EM Q FN+FS + + W E L + L QQ L C+ +
Sbjct: 74 QYTQPMKRDIKKAFYEMSLQAFNIFS-QHTFKYWKERHLKQIQIGLDQQAEYLNQCLEED 132
Query: 126 VGVTETPL-MKED------------SILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMR 172
E MKE+ S L +R+YF RI +LKEKKYS CAWE+VR EI R
Sbjct: 133 KNENEDMKEMKENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWEIVRVEIRR 192
>gi|37675283 adaptor-related protein complex 4, epsilon 1 subunit
[Homo sapiens]
Length = 1137
Score = 30.0 bits (66), Expect = 1.2
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 85 QIFNLFSTKDSSAAWDETLLDKFYTEL--YQQLNDLEACVIQGVGVTETPLMKEDSILAV 142
+IF+ + +S A + +L F E Y N +E C + + V+ + K+D +L V
Sbjct: 884 EIFHPPQSTAASVAKESSLASSFLEETTEYIHSNAMEVCNNETISVSSYKIWKDDCLLMV 943
Query: 143 RKYFQRITLYLKE-------------KKYSPCAWEVVRAEIMRSFSLSTNLQE 182
+ L LK + C V+ AE +SF S +++
Sbjct: 944 WSVTNKSGLELKSADLEIFPAENFKVTEQPGCCLPVMEAESTKSFQYSVQIEK 996
>gi|40795665 ubiquitin specific protease 4 isoform a [Homo sapiens]
Length = 963
Score = 29.3 bits (64), Expect = 2.1
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 62 PQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEAC 121
P F KA+TI + + ++++FN+ + +++ L +K+ + Y+QL+ L+
Sbjct: 148 PTNVLSCHFSKADTIATIEKEMRKLFNIPAERET------RLWNKYMSNTYEQLSKLDNT 201
Query: 122 V 122
V
Sbjct: 202 V 202
>gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens]
Length = 916
Score = 29.3 bits (64), Expect = 2.1
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 62 PQEEFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLEAC 121
P F KA+TI + + ++++FN+ + +++ L +K+ + Y+QL+ L+
Sbjct: 148 PTNVLSCHFSKADTIATIEKEMRKLFNIPAERET------RLWNKYMSNTYEQLSKLDNT 201
Query: 122 V 122
V
Sbjct: 202 V 202
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,323,890
Number of Sequences: 37866
Number of extensions: 248789
Number of successful extensions: 568
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 20
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.