Guide to the Human Genome
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Search of human proteins with 110578657

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|110578657 LOST1 [Homo sapiens]
         (177 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|110578657 LOST1 [Homo sapiens]                                     343   6e-95
gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]      101   3e-22
gi|211904185 hypothetical protein LOC387890 [Homo sapiens]             84   8e-17
gi|77681565 NG5 protein [Homo sapiens]                                 42   3e-04
gi|154707844 transmembrane protein 91 isoform a [Homo sapiens]         40   8e-04
gi|13376347 hypothetical protein LOC79953 [Homo sapiens]               38   0.004
gi|157743286 transmembrane protein 90A [Homo sapiens]                  33   0.17 
gi|55770880 kelch-like 5 isoform 3 [Homo sapiens]                      32   0.29 
gi|148612842 interferon-induced transmembrane protein 3 (1-8U) [...    32   0.29 
gi|65289292 kelch-like 5 isoform 1 [Homo sapiens]                      32   0.29 
gi|151101191 interferon induced transmembrane protein 2 (1-8D) [...    32   0.38 
gi|148613886 regulatory factor X domain containing 2 [Homo sapiens]    30   1.4  
gi|115298645 mitogen-activated protein kinase kinase kinase 14 [...    29   1.9  
gi|116235480 leucine zipper transcription regulator 2 [Homo sapi...    29   1.9  
gi|154146199 sal-like 3 [Homo sapiens]                                 29   1.9  
gi|150010589 interferon induced transmembrane protein 1 (9-27) [...    29   1.9  
gi|190194416 F-box and leucine-rich repeat protein 15 [Homo sapi...    28   4.2  
gi|4826934 protein phosphatase 4, regulatory subunit 1 isoform b...    28   4.2  
gi|108936953 protein phosphatase 4, regulatory subunit 1 isoform...    28   4.2  
gi|143770802 mitochondrial ribosomal protein L1 precursor [Homo ...    28   4.2  
gi|149588708 transmembrane protein 91 isoform c [Homo sapiens]         28   4.2  
gi|149588687 transmembrane protein 91 isoform c [Homo sapiens]         28   4.2  
gi|167001141 glypican 1 precursor [Homo sapiens]                       28   5.4  
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu...    27   7.1  
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre...    27   7.1  
gi|22547108 tumor necrosis factor receptor superfamily, member 1...    27   9.3  

>gi|110578657 LOST1 [Homo sapiens]
          Length = 177

 Score =  343 bits (879), Expect = 6e-95
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MAHPVQSEFPSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGL 60
           MAHPVQSEFPSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGL
Sbjct: 1   MAHPVQSEFPSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGL 60

Query: 61  PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN 120
           PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN
Sbjct: 61  PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN 120

Query: 121 LIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTVNFTVQKK 177
           LIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTVNFTVQKK
Sbjct: 121 LIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTVNFTVQKK 177


>gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]
          Length = 340

 Score =  101 bits (252), Expect = 3e-22
 Identities = 48/105 (45%), Positives = 73/105 (69%), Gaps = 3/105 (2%)

Query: 75  PRSPSRASSRRASSIATTSYAQDQEA---PRDYLILAVVACFCPVWPLNLIPLIISIMSR 131
           P SP  + SR  SS       +  E    PRDY+ILA+++CFCP+WP+N++    ++MSR
Sbjct: 236 PGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILAILSCFCPMWPVNIVAFAYAVMSR 295

Query: 132 SSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTVNFTVQK 176
           +S+QQG+VDGA+RLGR+A+LLSI  ++ G++II+ +  +N  V K
Sbjct: 296 NSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIASCVINLGVYK 340


>gi|211904185 hypothetical protein LOC387890 [Homo sapiens]
          Length = 109

 Score = 83.6 bits (205), Expect = 8e-17
 Identities = 40/102 (39%), Positives = 64/102 (62%)

Query: 72  APLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLNLIPLIISIMSR 131
           AP P       S   ++       +D   P++YL L +V+CFCP +P+N++ L+ SIMS 
Sbjct: 5   APSPDFKRALDSSPEANTEDDKTEEDVPMPKNYLWLTIVSCFCPAYPINIVALVFSIMSL 64

Query: 132 SSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTVNFT 173
           +S   G+ +GARRLGR A+ ++I  II+G++II ++  V+FT
Sbjct: 65  NSYNDGDYEGARRLGRNAKWVAIASIIIGLLIIGISCAVHFT 106


>gi|77681565 NG5 protein [Homo sapiens]
          Length = 306

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 18/79 (22%), Positives = 40/79 (50%)

Query: 96  QDQEAPRDYLILAVVACFCPVWPLNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSIT 155
           + +  P DY+ +AV+   C  WP  +I +  ++  R+++ +G++  A    R AR  S  
Sbjct: 215 EPRRPPHDYMPIAVLTTICCFWPTGIIAIFKAVQVRTALARGDMVSAEIASREARNFSFI 274

Query: 156 LIIMGIVIIMVAVTVNFTV 174
            + +GI  +++   +   +
Sbjct: 275 SLAVGIAAMVLCTILTVVI 293


>gi|154707844 transmembrane protein 91 isoform a [Homo sapiens]
          Length = 172

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 61  PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN 120
           P  ++S G L  P P      SS  + S            P D+L LAV +  C  WP+ 
Sbjct: 53  PLPSVSAG-LGEPRPPDVEDMSSSDSDSDWDGGSRLSPFLPHDHLGLAVFSMLCCFWPVG 111

Query: 121 LIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAV 168
           +    ++  +  +  +G++ GA    R A LL +  + +G+     A+
Sbjct: 112 IAAFCLAQKTNKAWAKGDIQGAGAASRRAFLLGVLAVGLGVCTYAAAL 159


>gi|13376347 hypothetical protein LOC79953 [Homo sapiens]
          Length = 258

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 92  TSYAQDQEA--------PRDYLILAVVACFCPVWPLNLIPLIISIMSRSSMQQGNVDGAR 143
           + Y+ D E+        PRD+L L+V +  C  WPL +    +S  +  ++ +G++  A 
Sbjct: 161 SDYSSDTESEDNFLMMPPRDHLGLSVFSMLCCFWPLGIAAFYLSHETNKAVAKGDLHQAS 220

Query: 144 RLGRLARLLSITLIIMGI-VIIMVAVTV 170
              R A  L++  I +G  V + VAV +
Sbjct: 221 TSSRRALFLAVLSITIGTGVYVGVAVAL 248


>gi|157743286 transmembrane protein 90A [Homo sapiens]
          Length = 238

 Score = 32.7 bits (73), Expect = 0.17
 Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 4/117 (3%)

Query: 55  QNSQGLPFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEA---PRDYLILAVVA 111
           Q ++ +  + +S G ++  L           + + +T S ++D      PRD+L L + +
Sbjct: 110 QAAENVTIQTVSYG-VQEELRDQEDDQEEEESDATSTESESEDNFLTLPPRDHLGLTLFS 168

Query: 112 CFCPVWPLNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAV 168
             C  WPL +     S  +  ++ +G+   A    R A  L+   I +G  + +  V
Sbjct: 169 MLCCFWPLGIAAFYFSQGTSKAISKGDFRLASTTSRRALFLATLAIAVGAGLYVAVV 225


>gi|55770880 kelch-like 5 isoform 3 [Homo sapiens]
          Length = 709

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 11  SAQEPGSAAFLDLPEMEILLTKAENKDD----KTLNLSKTLSGPLDLEQNSQGLPFKAIS 66
           +A++ G A +LD PE++   ++ EN+ D    +T N S+TLS    +E  +    F+A++
Sbjct: 96  TAEDCGGAHWLDRPEVDDGTSEEENESDSSSCRTSNSSQTLSSCHTMEPCTSDEFFQALN 155

Query: 67  EGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVA 111
             H E    +  +    ++   +     A D+  P   L+L+ V+
Sbjct: 156 --HAEQTFKKMENYLRHKQLCDVILV--AGDRRIPAHRLVLSSVS 196


>gi|148612842 interferon-induced transmembrane protein 3 (1-8U)
           [Homo sapiens]
          Length = 133

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 25/112 (22%), Positives = 53/112 (47%), Gaps = 10/112 (8%)

Query: 62  FKAISEGHLEAPL--PRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVV-ACFCPVWP 118
           ++ + E H  A L  P +P+  +S       T  + + + +  D+++ ++    F     
Sbjct: 20  YEMLKEEHEVAVLGAPHNPAPPTS-------TVIHIRSETSVPDHVVWSLFNTLFMNPCC 72

Query: 119 LNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVIIMVAVTV 170
           L  I    S+ SR     G+V GA+     A+ L+I  +I+GI++ ++ + +
Sbjct: 73  LGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTILLIVI 124


>gi|65289292 kelch-like 5 isoform 1 [Homo sapiens]
          Length = 755

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 11  SAQEPGSAAFLDLPEMEILLTKAENKDD----KTLNLSKTLSGPLDLEQNSQGLPFKAIS 66
           +A++ G A +LD PE++   ++ EN+ D    +T N S+TLS    +E  +    F+A++
Sbjct: 142 TAEDCGGAHWLDRPEVDDGTSEEENESDSSSCRTSNSSQTLSSCHTMEPCTSDEFFQALN 201

Query: 67  EGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVA 111
             H E    +  +    ++   +     A D+  P   L+L+ V+
Sbjct: 202 --HAEQTFKKMENYLRHKQLCDVILV--AGDRRIPAHRLVLSSVS 242


>gi|151101191 interferon induced transmembrane protein 2 (1-8D)
           [Homo sapiens]
          Length = 132

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 86  ASSIATTSYAQDQEAPRDYLILAVV-ACFCPVWPLNLIPLIISIMSRSSMQQGNVDGARR 144
           A  ++T  + + + +  D+++ ++    F     L  I    S+ SR     G+V GA+ 
Sbjct: 38  APPMSTVIHIRSETSVPDHVVWSLFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQA 97

Query: 145 LGRLARLLSITLIIMGIVIIMVAVTV 170
               A+ L+I  +I+GI + ++ + +
Sbjct: 98  YASTAKCLNIWALILGIFMTILLIII 123


>gi|148613886 regulatory factor X domain containing 2 [Homo sapiens]
          Length = 1460

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 45  KTLSGPLDLEQNSQGLPFKAISEGHLEAPLPRSPSRASSRRASSIATTS 93
           KTL  P+D +Q  Q    K   E  L++PLP   +   S  A+S   T+
Sbjct: 295 KTLPSPIDAKQQLQRKIQKKQQEQKLQSPLPGESAAKKSESATSNGVTN 343


>gi|115298645 mitogen-activated protein kinase kinase kinase 14
           [Homo sapiens]
          Length = 947

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 11  SAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGLPFKAISEGHL 70
           S+ EP  A     PE +  + + E +  +      +LS P  LE+  Q L   +I    L
Sbjct: 746 SSLEPAPARNPSSPERKATVPEQELQQLEIELFLNSLSQPFSLEEQEQILSCLSIDSLSL 805

Query: 71  EAPLPRSPSRA--SSRRASSIATTSYAQDQEA 100
                ++PS+A  SSR   S    S++   EA
Sbjct: 806 SDDSEKNPSKASQSSRDTLSSGVHSWSSQAEA 837


>gi|116235480 leucine zipper transcription regulator 2 [Homo
           sapiens]
          Length = 1060

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 5/42 (11%)

Query: 10  PSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPL 51
           PS+   G AA ++L  ME++L  +E +++      ++ SGPL
Sbjct: 295 PSSPTDGQAALVELHSMEVILNDSEEQEE-----MRSFSGPL 331


>gi|154146199 sal-like 3 [Homo sapiens]
          Length = 1300

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 30  LTKAENKDDKTLNLSKTLSGPL-DLEQNSQGLPFKAISEGHLEAPLPRSPSRASSRRASS 88
           L   EN   ++  LS   S  + DLE  S G P  A+SE      L  +PS   S R+ S
Sbjct: 862 LKSVENGSGESDRLSNDSSSAVGDLESRSAGSP--ALSESSSSQALSPAPSNGESFRSKS 919

Query: 89  IATTSYAQDQEAP 101
               +  + QE P
Sbjct: 920 PGLGAPEEPQEIP 932


>gi|150010589 interferon induced transmembrane protein 1 (9-27)
           [Homo sapiens]
          Length = 125

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 119 LNLIPLIISIMSRSSMQQGNVDGARRLGRLARLLSITLIIMGIVI 163
           L  I    S+ SR     G+V GA+     A+ L+I  +I+GI++
Sbjct: 52  LGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILM 96


>gi|190194416 F-box and leucine-rich repeat protein 15 [Homo
          sapiens]
          Length = 300

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 13 QEPGSAAFLDLPEMEILLTKAENK 36
          QEPG+  FLDLP  ++LL    N+
Sbjct: 12 QEPGAVRFLDLPWEDVLLPHVLNR 35


>gi|4826934 protein phosphatase 4, regulatory subunit 1 isoform b
           [Homo sapiens]
          Length = 933

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 51  LDLEQNSQGLPFKAISEGHLEAPLPRSPSRASSRR 85
           ++LEQNS G P     E   E P+P SP+   + R
Sbjct: 453 IELEQNSGGKPSPEGPEEESEGPVPSSPNITMATR 487


>gi|108936953 protein phosphatase 4, regulatory subunit 1 isoform a
           [Homo sapiens]
          Length = 950

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 51  LDLEQNSQGLPFKAISEGHLEAPLPRSPSRASSRR 85
           ++LEQNS G P     E   E P+P SP+   + R
Sbjct: 470 IELEQNSGGKPSPEGPEEESEGPVPSSPNITMATR 504


>gi|143770802 mitochondrial ribosomal protein L1 precursor [Homo
           sapiens]
          Length = 325

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 87  SSIATTSYAQDQEAPRDYLILAVVACFCPVWPLNLIPLIISIMSRSSMQQG 137
           + IAT   + DQ A     + AV+   C   PLNL P ++    RSS  +G
Sbjct: 255 TKIATLDMSSDQIAAN---LQAVINEVCRHRPLNLGPFVVRAFLRSSTSEG 302


>gi|149588708 transmembrane protein 91 isoform c [Homo sapiens]
          Length = 133

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 61  PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN 120
           P  ++S G L  P P      SS  + S            P D+L LAV +  C  WP+ 
Sbjct: 53  PLPSVSAG-LGEPRPPDVEDMSSSDSDSDWDGGSRLSPFLPHDHLGLAVFSMLCCFWPVG 111

Query: 121 LIPLIISIMSRSS 133
           +    ++  +R S
Sbjct: 112 IAAFCLAQKTRPS 124


>gi|149588687 transmembrane protein 91 isoform c [Homo sapiens]
          Length = 133

 Score = 28.1 bits (61), Expect = 4.2
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 61  PFKAISEGHLEAPLPRSPSRASSRRASSIATTSYAQDQEAPRDYLILAVVACFCPVWPLN 120
           P  ++S G L  P P      SS  + S            P D+L LAV +  C  WP+ 
Sbjct: 53  PLPSVSAG-LGEPRPPDVEDMSSSDSDSDWDGGSRLSPFLPHDHLGLAVFSMLCCFWPVG 111

Query: 121 LIPLIISIMSRSS 133
           +    ++  +R S
Sbjct: 112 IAAFCLAQKTRPS 124


>gi|167001141 glypican 1 precursor [Homo sapiens]
          Length = 558

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 16/127 (12%)

Query: 10  PSAQEPGSAAFLDLPEMEILLTKAENKDDKTLNLSKTLSGPLDLEQNSQGLPFKAISE-- 67
           P     G A  ++ PE+E+ +TK +    + +   K ++  L    N   + F+  S+  
Sbjct: 426 PEVMGDGLANQINNPEVEVDITKPDMTIRQQIMQLKIMTNRLRSAYNGNDVDFQDASDDG 485

Query: 68  ---GHLEAPLPRSPSRASSRRASSIAT-TSYA----QDQEAPRDYLILAVVACFCPVWPL 119
              G  +  L    SR  SR++SS  T  ++A     +QE  +        A  CP  P 
Sbjct: 486 SGSGSGDGCLDDLCSRKVSRKSSSSRTPLTHALPGLSEQEGQK------TSAASCPQPPT 539

Query: 120 NLIPLII 126
            L+PL++
Sbjct: 540 FLLPLLL 546


>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
           precursor [Homo sapiens]
          Length = 513

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 31  TKAENKDDKTLNLSKTLSGPLDLEQNSQGLPFKAISEGHLEAPLPRSPSR----ASSRRA 86
           +K ++++D   NLS+  S      QN  G   ++  E +L +    S S+    + SR  
Sbjct: 313 SKGDSQEDSKENLSQEES------QNVDGPSSESSQEANLSSQENSSESQEEVVSESRGD 366

Query: 87  SSIATTSYAQDQE 99
           +   TTSY +DQE
Sbjct: 367 NPDPTTSYVEDQE 379


>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
           precursor [Homo sapiens]
          Length = 497

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 31  TKAENKDDKTLNLSKTLSGPLDLEQNSQGLPFKAISEGHLEAPLPRSPSR----ASSRRA 86
           +K ++++D   NLS+  S      QN  G   ++  E +L +    S S+    + SR  
Sbjct: 297 SKGDSQEDSKENLSQEES------QNVDGPSSESSQEANLSSQENSSESQEEVVSESRGD 350

Query: 87  SSIATTSYAQDQE 99
           +   TTSY +DQE
Sbjct: 351 NPDPTTSYVEDQE 363


>gi|22547108 tumor necrosis factor receptor superfamily, member 10d
           precursor [Homo sapiens]
          Length = 386

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 145 LGRLARLLSITLIIMGIVIIMVAVTVNFTVQKK 177
           LG LA      +II+ +VII+  V V F+ +KK
Sbjct: 203 LGMLASPYHYLIIIVVLVIILAVVVVGFSCRKK 235


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,942,149
Number of Sequences: 37866
Number of extensions: 241473
Number of successful extensions: 1064
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1048
Number of HSP's gapped (non-prelim): 26
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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