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Search of human proteins with 16579885
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16579885 ribosomal protein L4 [Homo sapiens]
(427 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16579885 ribosomal protein L4 [Homo sapiens] 852 0.0
gi|153070260 myristoylated alanine-rich protein kinase C substra... 41 0.002
gi|78000183 ribosomal protein L14 [Homo sapiens] 40 0.003
gi|78000181 ribosomal protein L14 [Homo sapiens] 40 0.003
gi|4885379 histone cluster 1, H1e [Homo sapiens] 40 0.005
gi|4885381 histone cluster 1, H1b [Homo sapiens] 39 0.009
gi|104526627 triadin [Homo sapiens] 39 0.012
gi|4885377 histone cluster 1, H1d [Homo sapiens] 37 0.026
gi|4885375 histone cluster 1, H1c [Homo sapiens] 37 0.026
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 37 0.034
gi|55956788 nucleolin [Homo sapiens] 37 0.045
gi|4885371 H1 histone family, member 0 [Homo sapiens] 35 0.100
gi|87162461 fragile X mental retardation 2 [Homo sapiens] 35 0.17
gi|110349719 titin isoform N2-A [Homo sapiens] 34 0.22
gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo ... 34 0.29
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 34 0.29
gi|73747887 ADAM metallopeptidase domain 12 isoform 2 preproprot... 33 0.38
gi|73747885 ADAM metallopeptidase domain 12 isoform 1 preproprot... 33 0.38
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 33 0.38
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 33 0.38
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 33 0.38
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 33 0.38
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 33 0.49
gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo ... 33 0.49
gi|4885373 histone cluster 1, H1a [Homo sapiens] 33 0.65
gi|169163639 PREDICTED: hypothetical protein [Homo sapiens] 32 0.84
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 32 0.84
gi|88954992 PREDICTED: hypothetical protein [Homo sapiens] 32 0.84
gi|88953166 PREDICTED: hypothetical protein [Homo sapiens] 32 0.84
gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens] 32 0.84
>gi|16579885 ribosomal protein L4 [Homo sapiens]
Length = 427
Score = 852 bits (2201), Expect = 0.0
Identities = 427/427 (100%), Positives = 427/427 (100%)
Query: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 121 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI 180
RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI
Sbjct: 121 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI 180
Query: 181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 240
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 240
Query: 241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQR 300
APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQR
Sbjct: 241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQR 300
Query: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAA 360
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAA
Sbjct: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAA 360
Query: 361 LQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTT 420
LQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTT
Sbjct: 361 LQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTT 420
Query: 421 EEKKPAA 427
EEKKPAA
Sbjct: 421 EEKKPAA 427
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 354 AAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKP--APEK 411
AAAAAA A S E+AA G++ G++G AA G ++ KP + A A +KP + E
Sbjct: 200 AAAAAAEAGAASGEQAAAPGEEAAAGEEG--AAGGDPQEAKP--QEAAVAPEKPPASDET 255
Query: 412 KPAEKKPTTEEKK 424
K AE+ EEKK
Sbjct: 256 KAAEEPSKVEEKK 268
Score = 28.9 bits (63), Expect = 9.3
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 352 DKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKA--AVGVKKQKKPLVGKKAAATKKPA- 408
++ AA +AK E AAVA +KP + K A V+++K G AAA + P+
Sbjct: 226 EEGAAGGDPQEAKPQE-AAVAPEKPPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSA 284
Query: 409 --PEKKPAEKKPTTEEKKPAA 427
P P ++ EE AA
Sbjct: 285 AGPGAPPEQEAAPAEEPAAAA 305
>gi|78000183 ribosomal protein L14 [Homo sapiens]
Length = 215
Score = 40.4 bits (93), Expect = 0.003
Identities = 42/125 (33%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 291 RILKSPEIQRALRAPRKKIHRRVLKKNPLKNLR--IMLKLNPYAKTMRRNTILRQARNHK 348
R K + R KK+ R++K N +K L+ +LK +P + T A
Sbjct: 100 RKAKMTDFDRFKVMKAKKMRNRIIK-NEVKKLQKAALLKASPKKAPGTKGTAAAAA---- 154
Query: 349 LRVDKAAAAAAALQAK---SDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATK 405
AAAAA + AK + K A A K P G+KAA K QK G+KA A K
Sbjct: 155 ------AAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQK----GQKAPAQK 204
Query: 406 KPAPE 410
PAP+
Sbjct: 205 APAPK 209
Score = 31.6 bits (70), Expect = 1.4
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 362 QAKSDEKAAV--AGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPT 419
+ K +KAA+ A K G KG AA K K AA+KK +K PA+ K T
Sbjct: 126 EVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQ-KAT 184
Query: 420 TEEKKPA 426
++ PA
Sbjct: 185 GQKAAPA 191
>gi|78000181 ribosomal protein L14 [Homo sapiens]
Length = 215
Score = 40.4 bits (93), Expect = 0.003
Identities = 42/125 (33%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 291 RILKSPEIQRALRAPRKKIHRRVLKKNPLKNLR--IMLKLNPYAKTMRRNTILRQARNHK 348
R K + R KK+ R++K N +K L+ +LK +P + T A
Sbjct: 100 RKAKMTDFDRFKVMKAKKMRNRIIK-NEVKKLQKAALLKASPKKAPGTKGTAAAAA---- 154
Query: 349 LRVDKAAAAAAALQAK---SDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATK 405
AAAAA + AK + K A A K P G+KAA K QK G+KA A K
Sbjct: 155 ------AAAAAKVPAKKITAASKKAPAQKVPAQKATGQKAAPAPKAQK----GQKAPAQK 204
Query: 406 KPAPE 410
PAP+
Sbjct: 205 APAPK 209
Score = 31.6 bits (70), Expect = 1.4
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 362 QAKSDEKAAV--AGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPT 419
+ K +KAA+ A K G KG AA K K AA+KK +K PA+ K T
Sbjct: 126 EVKKLQKAALLKASPKKAPGTKGTAAAAAAAAAAKVPAKKITAASKKAPAQKVPAQ-KAT 184
Query: 420 TEEKKPA 426
++ PA
Sbjct: 185 GQKAAPA 191
>gi|4885379 histone cluster 1, H1e [Homo sapiens]
Length = 219
Score = 39.7 bits (91), Expect = 0.005
Identities = 27/71 (38%), Positives = 33/71 (46%)
Query: 342 RQARNHKLRVDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKA 401
+ A+ + K AAAA A +AKS +KA A K K AV K K KA
Sbjct: 149 KSAKKTPKKAKKPAAAAGAKKAKSPKKAKAAKPKKAPKSPAKAKAVKPKAAKPKTAKPKA 208
Query: 402 AATKKPAPEKK 412
A KK A +KK
Sbjct: 209 AKPKKAAAKKK 219
Score = 37.4 bits (85), Expect = 0.026
Identities = 28/73 (38%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 356 AAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEK--KP 413
A AA KS +K KKP KKA K KK K A K PA K KP
Sbjct: 141 ATGAATPKKSAKKTPKKAKKPAAAAGAKKA----KSPKKAKAAKPKKAPKSPAKAKAVKP 196
Query: 414 AEKKPTTEEKKPA 426
KP T + K A
Sbjct: 197 KAAKPKTAKPKAA 209
Score = 34.7 bits (78), Expect = 0.17
Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 350 RVDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGV-----------KKQKKPLVG 398
+++K AA+ A + K+ + A KKP K K A G KK KKP
Sbjct: 106 KLNKKAASGEA-KPKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAA- 163
Query: 399 KKAAATKKPAPEKKPAEKKPTTEEKKPA 426
AA KK KK KP K PA
Sbjct: 164 --AAGAKKAKSPKKAKAAKPKKAPKSPA 189
Score = 32.7 bits (73), Expect = 0.65
Identities = 31/70 (44%), Positives = 35/70 (50%), Gaps = 18/70 (25%)
Query: 364 KSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKP------APEKKPAEKK 417
K ++KAA KP K KKA G K KKP A A KKP A KK A+K
Sbjct: 106 KLNKKAASGEAKP----KAKKA--GAAKAKKP-----AGAAKKPKKATGAATPKKSAKKT 154
Query: 418 PTTEEKKPAA 427
P + KKPAA
Sbjct: 155 PK-KAKKPAA 163
Score = 31.2 bits (69), Expect = 1.9
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 364 KSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTTEEK 423
K+ + AA AG K K KAA K +K P KA A K A + K A+ K +K
Sbjct: 157 KAKKPAAAAGAKKAKSPKKAKAA---KPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKK 213
Query: 424 KPA 426
A
Sbjct: 214 AAA 216
>gi|4885381 histone cluster 1, H1b [Homo sapiens]
Length = 226
Score = 38.9 bits (89), Expect = 0.009
Identities = 39/92 (42%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 348 KLRVDKAAAAAAALQAKSDEKAA--VAGKKPVVGKKGKKA----AVGVKK-QKKPLVGKK 400
K + KA AA A A + K A AG K V K KKA A GVKK K P K
Sbjct: 120 KPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKA 179
Query: 401 AA----ATKKPAPEK--KPAEKKPTTEEKKPA 426
AA ATK PA K KP KP + K A
Sbjct: 180 AAKPKKATKSPAKPKAVKPKAAKPKAAKPKAA 211
Score = 37.7 bits (86), Expect = 0.020
Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 350 RVDKAAAAAAALQAKSDEKAAVAGKKPV--VGKKGKKAAVGVKK--QKKPLVGKK--AAA 403
+++K AA+ A + K+ + A KKP KK KKAA G KK +K P KK AA
Sbjct: 109 KLNKKAASGEA-KPKAKKAGAAKAKKPAGATPKKAKKAA-GAKKAVKKTPKKAKKPAAAG 166
Query: 404 TKKPA--PEKKPAEKKPTTEEKKPA 426
KK A P+K A KP K PA
Sbjct: 167 VKKVAKSPKKAKAAAKPKKATKSPA 191
Score = 37.4 bits (85), Expect = 0.026
Identities = 26/68 (38%), Positives = 28/68 (41%)
Query: 350 RVDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAP 409
+ K AAA AKS +KA A K K K K KP K AA K A
Sbjct: 158 KAKKPAAAGVKKVAKSPKKAKAAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAK 217
Query: 410 EKKPAEKK 417
KK A KK
Sbjct: 218 AKKAAAKK 225
Score = 34.3 bits (77), Expect = 0.22
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 364 KSDEKAAVAGKKPVVGKKG----KKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAE---K 416
K ++KAA KP K G KK A K+ K G K A K P KKPA K
Sbjct: 109 KLNKKAASGEAKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVK 168
Query: 417 KPTTEEKKPAA 427
K KK A
Sbjct: 169 KVAKSPKKAKA 179
Score = 29.6 bits (65), Expect = 5.5
Identities = 32/85 (37%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 350 RVDKAAAAAAALQA--KSDEKAAVAGKKPVVG--KKGKKAAVGVKKQKKPLVGK----KA 401
+ KAA A A++ K +K A AG K V KK K AA K K P K KA
Sbjct: 141 KAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAAAKPKKATKSPAKPKAVKPKA 200
Query: 402 AATK--KPAPEKKPAEKKPTTEEKK 424
A K KP K A K KK
Sbjct: 201 AKPKAAKPKAAKPKAAKAKKAAAKK 225
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 38.5 bits (88), Expect = 0.012
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 26/167 (15%)
Query: 270 AASLKSNYNLPMHKMINTDLSRI---LKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIML 326
A S K +++P K + R + + I++A+ +++ + +++ K
Sbjct: 407 AKSPKKEHSVPSDKQVKAKTERAKEEIGAVSIKKAVPGKKEEKTTKTVEQEIRKE----- 461
Query: 327 KLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAALQ--AKSDEKAAVAGK----KP--VV 378
K+ + ++IL+ K + +K A+ + K DEK + AGK KP +
Sbjct: 462 ------KSGKTSSILKDKEPIKGKEEKVPASLKEKEPETKKDEKMSKAGKEVKPKPPQLQ 515
Query: 379 GKKGKKAAVGVKKQKKPLVGKKAAATKKP--APEKKPAEKKPTTEEK 423
GKK +K +KK+ KP + +K K+ PEK + KP EEK
Sbjct: 516 GKKEEKPEPQIKKEAKPAISEKVQIHKQDIVKPEKTVSHGKP--EEK 560
Score = 33.1 bits (74), Expect = 0.49
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 306 RKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR-----NHKLRVDKAAAAAAA 360
+K+IH+ +K +I K+ K + + + + HK +++K
Sbjct: 140 KKEIHKDKTEKQEKPERKIQTKVTHKEKEKGKEKVREKEKPEKKATHKEKIEKKEKPETK 199
Query: 361 LQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTT 420
AK +KA A K +K KK G K++K K A K +K P+ KP
Sbjct: 200 TLAKEQKKAKTAEKSE---EKTKKEVKGGKQEKV-----KQTAAKVKEVQKTPS--KPKE 249
Query: 421 EEKKPAA 427
+E K A
Sbjct: 250 KEDKEKA 256
Score = 29.3 bits (64), Expect = 7.1
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 361 LQAKSDEKAAVAGKKPVVGKKGKK--------AAVGVKKQKKPLVGKKAAATKKPAPEKK 412
++ KS+++ A+ +K GK + A KK +K KK TKKPA ++
Sbjct: 335 IKKKSEKETAIDVEKKEPGKASETKQGTVKIAAQAAAKKDEKKEDSKK---TKKPAEVEQ 391
Query: 413 PAEKKPTTEEK 423
P KK +EK
Sbjct: 392 PKGKKQEKKEK 402
>gi|4885377 histone cluster 1, H1d [Homo sapiens]
Length = 221
Score = 37.4 bits (85), Expect = 0.026
Identities = 37/111 (33%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 327 KLNPYAKTMRRNTILRQARNHKLRVDKAAA------AAAALQAKSDEKAAVAGKKPVVGK 380
KLN A + ++A K R AA A AA KS +K KKP
Sbjct: 107 KLNKKAASGEGKPKAKKAGAAKPRKPAGAAKKPKKVAGAATPKKSIKKTPKKVKKPATAA 166
Query: 381 KGKKAAVGVKKQKKP---LVGKKAAATKKPAPE-KKPAEKKPTTEEKKPAA 427
KK A KK K P K A K P P+ KP KP + K AA
Sbjct: 167 GTKKVAKSAKKVKTPQPKKAAKSPAKAKAPKPKAAKPKSGKPKVTKAKKAA 217
>gi|4885375 histone cluster 1, H1c [Homo sapiens]
Length = 213
Score = 37.4 bits (85), Expect = 0.026
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 356 AAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAE 415
AA A KS +K KKP KK A K KK V K A K A KP
Sbjct: 141 AAGGATPKKSAKKTPKKAKKPAAATVTKKVA---KSPKKAKVAKPKKAAKSAAKAVKPKA 197
Query: 416 KKPTTEEKKPAA 427
KP + K AA
Sbjct: 198 AKPKVVKPKKAA 209
Score = 31.2 bits (69), Expect = 1.9
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 364 KSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTTEEK 423
K ++KAA KP V K G G K +K KK A KK A+K P + K
Sbjct: 106 KLNKKAASGEAKPKVKKAG-----GTKPKKPVGAAKKPKKAAGGATPKKSAKKTPK-KAK 159
Query: 424 KPAA 427
KPAA
Sbjct: 160 KPAA 163
Score = 29.6 bits (65), Expect = 5.5
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 354 AAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKK 406
AAA AKS +KA VA KP K AV K K +V K AA KK
Sbjct: 162 AAATVTKKVAKSPKKAKVA--KPKKAAKSAAKAVKPKAAKPKVVKPKKAAPKK 212
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 37.0 bits (84), Expect = 0.034
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 25/144 (17%)
Query: 293 LKSPE-----IQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNH 347
+KSPE ++ +AP K+I ++ K+P+K + ++
Sbjct: 793 VKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKE-------------EEKPQEVKVKEPP 839
Query: 348 KLRVDKAAAAAAALQAKSDEKAAVAGKK----PVVGKKGKKAAVGVKKQKKPLVGKKAAA 403
K ++ A A + K D K A KK P V +K K+ AV K+ K K+ A
Sbjct: 840 KKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEK-KEPAVEKPKESKVEAKKEEAE 898
Query: 404 TKK--PAPEKKPAEKKPTTEEKKP 425
KK P PEK+ K E+ KP
Sbjct: 899 DKKKVPTPEKEAPAKVEVKEDAKP 922
Score = 33.1 bits (74), Expect = 0.49
Identities = 47/194 (24%), Positives = 79/194 (40%), Gaps = 21/194 (10%)
Query: 254 ESAFRKLD-ELYGT-WRKAASLKSNYNLPMHKM---INTDLSRILKSPEIQRALRAPRKK 308
+ A ++LD EL T W AA L+ +L KM I R L E R P
Sbjct: 361 QEAIQQLDAELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPIPF 420
Query: 309 IHRRVLKKNPLKNLRIMLKLNPYAKTMRRN---TILRQARNHKLRVDKAAAAAAALQAKS 365
L K P + I +K K + ++ T++ + + + +V + +AK
Sbjct: 421 SLPEGLPKIPSVSTHIKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKE 480
Query: 366 DE---------KAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKK---- 412
+E + A G++ ++AA K+ K P+ + + + +PEK+
Sbjct: 481 EEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKS 540
Query: 413 PAEKKPTTEEKKPA 426
PAE K + K PA
Sbjct: 541 PAEVKSPEKAKSPA 554
Score = 33.1 bits (74), Expect = 0.49
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 363 AKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEK--KPAEKKPTT 420
AK EK VA K+P K K+ KP K+AA KK E+ K E+KP T
Sbjct: 920 AKPKEKTEVAKKEPDDAK--------AKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKT 971
Query: 421 EEK 423
E K
Sbjct: 972 EAK 974
Score = 32.3 bits (72), Expect = 0.84
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 12/136 (8%)
Query: 294 KSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDK 353
KSPE + A + K + K+P K + +K + ++ + +A++ +
Sbjct: 653 KSPEKEEAKSPEKAKSPVKAEAKSPEK-AKSPVKAEAKSPEKAKSPVKEEAKS-----PE 706
Query: 354 AAAAAAALQAKSDEKAAVAGKKPVV--GKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEK 411
A + +AKS EKA K PV K +KA VK++ K K+ K K
Sbjct: 707 KAKSPVKEEAKSPEKA----KSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVK 762
Query: 412 KPAEKKPTTEEKKPAA 427
P K P EE + A
Sbjct: 763 SPEAKTPAKEEARSPA 778
Score = 30.4 bits (67), Expect = 3.2
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 7/131 (5%)
Query: 293 LKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVD 352
+KSPE + P K+ R K P K + +K + ++ + A+ + +
Sbjct: 761 VKSPEA----KTPAKEEARSPADKFPEK-AKSPVKEEVKSPEKAKSPLKEDAKAPEKEIP 815
Query: 353 KAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKK 412
K + ++ + + + P ++ K A ++KK KK A KK AP+ K
Sbjct: 816 KKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKD--SKKEEAPKKEAPKPK 873
Query: 413 PAEKKPTTEEK 423
EKK EK
Sbjct: 874 VEEKKEPAVEK 884
Score = 29.3 bits (64), Expect = 7.1
Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 15/139 (10%)
Query: 294 KSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDK 353
KSPE + A K + K+P K K P AK+ + A K
Sbjct: 531 KSPEKEEAKSPAEVKSPEKA--KSPAKE---EAKSPPEAKSPEKEEAKSPAEVKSPEKAK 585
Query: 354 AAA---AAAALQAKSDEKAAVAGKKPV--VGKKGKKAAVGVKKQ-KKPLVGKKAAATKKP 407
+ A A + +AKS EKA K PV K +A VK++ K P K K P
Sbjct: 586 SPAKEEAKSPAEAKSPEKA----KSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSP 641
Query: 408 APEKKPAEKKPTTEEKKPA 426
E+ + +K + EK+ A
Sbjct: 642 TKEEAKSPEKAKSPEKEEA 660
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 36.6 bits (83), Expect = 0.045
Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 352 DKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLV-GKKAAATKKPAPE 410
D ++ + K +KAA K VV KK AV +K + GKKAAAT PA +
Sbjct: 39 DDSSGEEVVIPQKKGKKAAATSAKKVVVSPTKKVAVATPAKKAAVTPGKKAAAT--PAKK 96
Query: 411 KKPAEKKPTTEEKKPA 426
K TT KK A
Sbjct: 97 TVTPAKAVTTPGKKGA 112
>gi|4885371 H1 histone family, member 0 [Homo sapiens]
Length = 194
Score = 35.4 bits (80), Expect = 0.100
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 320 KNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAALQ-AKSDEKAAVAGKKPVV 378
K ++ K+ A + + +I R L+ K A+ + + AKSDE KK V
Sbjct: 52 KYIKSHYKVGENADSQIKLSIKRLVTTGVLKQTKGVGASGSFRLAKSDEP-----KKSVA 106
Query: 379 GKKGKKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTTEEKKPAA 427
KK KK V KK KKAA+ AP KKP +KK AA
Sbjct: 107 FKKTKKEIKKVATPKKASKPKKAASK---APTKKPKATPVKKAKKKLAA 152
Score = 30.4 bits (67), Expect = 3.2
Identities = 28/83 (33%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 348 KLRVDKAAAAAAALQAKSDEKAAVAGKKPV---VGKKGKKAAVGVKKQKKPLVGKKAAAT 404
K + K A A + K A KKP V K KK A KK KKP K
Sbjct: 111 KKEIKKVATPKKASKPKKAASKAPT-KKPKATPVKKAKKKLAATPKKAKKPKTVK----- 164
Query: 405 KKPAPEKKPAEKKPTTEEKKPAA 427
KP KP + KP + K +A
Sbjct: 165 AKPVKASKPKKAKPVKPKAKSSA 187
>gi|87162461 fragile X mental retardation 2 [Homo sapiens]
Length = 1311
Score = 34.7 bits (78), Expect = 0.17
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 16/140 (11%)
Query: 285 INTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQA 344
+ T+ S++ P+ + L R+K R +K P + + KL+ ++T+ + TI
Sbjct: 572 VKTNASQVPAEPKERPLLSLIREKARPRPTQKIP-ETKALKHKLSTTSETVSQRTI---G 627
Query: 345 RNHKLRVDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAAT 404
+ +V+K +DE KP + K V+ P G+ A
Sbjct: 628 KKQPKKVEK--------NTSTDE---FTWPKPNITSSTPKEKESVELHDPPR-GRNKATA 675
Query: 405 KKPAPEKKPAEKKPTTEEKK 424
KPAP K+P P EKK
Sbjct: 676 HKPAPRKEPRPNIPLAPEKK 695
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 34.3 bits (77), Expect = 0.22
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 367 EKAAVAGKKPVVGKKGK-KAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTTEEKKP 425
+K A K P V KK + K V + K++KP K KKP PE+K P E P
Sbjct: 9970 KKEAPPAKVPEVPKKPEEKVPVLIPKKEKPPPAKVPEVPKKPVPEEKVPVPVPKKVEAPP 10029
Query: 426 A 426
A
Sbjct: 10030 A 10030
Score = 30.4 bits (67), Expect = 3.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 383 KKAAVGVKKQKKPLVGKKAAATKKPAPEKKPAEKKPTTEEKKPA 426
+K V V K++ P + K+ PE+K + KP EE+ PA
Sbjct: 9647 EKVLVAVTKKEAPPKARVPEEPKRAVPEEKVLKLKPKREEEPPA 9690
Score = 30.0 bits (66), Expect = 4.2
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 350 RVDKAAAAAAALQAKSDEKAAVAGKKPVVGKK---GKKAAVGVKKQKKPLVGKKAAATKK 406
R +K + AK +E K P KK KK V K++K K KK
Sbjct: 9557 RQEKKIVLKPKIPAKIEEPPPA--KVPEAPKKIVPEKKVPAPVPKKEKVPPPKVPEEPKK 9614
Query: 407 PAPEKKPAEKKPTTEEKKPA 426
P PEKK K EE PA
Sbjct: 9615 PVPEKKVPPKVIKMEEPLPA 9634
>gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo
sapiens]
Length = 351
Score = 33.9 bits (76), Expect = 0.29
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 331 YAKTMRRNTILRQARNHKLRVDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVG-- 388
+ K RR A KL+ AAAA + +K A AG K ++G+KAA
Sbjct: 176 HRKPRRRGERAAAAGGKKLQ----KAAAAKSRGGGGKKTAAAGGKKPRRRRGQKAAKSRG 231
Query: 389 -----VKKQKKPLVGKKAAATKKP-APEKKPAEKKPTTEEK 423
+++QK L G K+ KKP KK E+ T+ +
Sbjct: 232 GGDKKLERQKAALTGVKSRGDKKPLRGGKKQRERGQNTKSR 272
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 33.9 bits (76), Expect = 0.29
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 305 PRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAAL-QA 363
P+K++ ++ K P+K K K +++ + + K V K +
Sbjct: 656 PKKEVAKKE-DKTPIKKEE-KPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEV 713
Query: 364 KSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLV-GKKAAATKKPAPEKKPAEKKPTTEE 422
K +EK V ++ K+ KK KK PL KK AA K P+K+ + KK +
Sbjct: 714 KKEEKKEVKKEEKEPKKEIKKLPKDAKKSSTPLSEAKKPAALKPKVPKKEESVKKDSVAA 773
Query: 423 KKP 425
KP
Sbjct: 774 GKP 776
Score = 29.3 bits (64), Expect = 7.1
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 333 KTMRRNTILRQARNHKLRVDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQ 392
KT+++ T ++ + K +K A + K+ K KK V K+ KK +K+
Sbjct: 636 KTVKKETKVKP-EDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKEEVKKEVKKEIKKEEKK 694
Query: 393 KKPLVGKKAAATKKPAPEKKPAEKKPTTEEKK 424
+ KK K+ E K EKK +E+K
Sbjct: 695 EPKKEVKKETPPKEVKKEVKKEEKKEVKKEEK 726
>gi|73747887 ADAM metallopeptidase domain 12 isoform 2 preproprotein
[Homo sapiens]
Length = 738
Score = 33.5 bits (75), Expect = 0.38
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 104 PTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKK 163
P++TW R H+R +Y L A +G +E+V + + + + V+ + +
Sbjct: 197 PSQTWARRHKRETLKATKYV---ELVIVADNREFQRQGKDLEKVKQRLIEIANHVDKFYR 253
Query: 164 TKEAVLLLKKLKAWNDIKKVYASQ 187
++L ++ WND+ K SQ
Sbjct: 254 PLNIRIVLVGVEVWNDMDKCSVSQ 277
>gi|73747885 ADAM metallopeptidase domain 12 isoform 1 preproprotein
[Homo sapiens]
Length = 909
Score = 33.5 bits (75), Expect = 0.38
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 104 PTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKK 163
P++TW R H+R +Y L A +G +E+V + + + + V+ + +
Sbjct: 197 PSQTWARRHKRETLKATKYV---ELVIVADNREFQRQGKDLEKVKQRLIEIANHVDKFYR 253
Query: 164 TKEAVLLLKKLKAWNDIKKVYASQ 187
++L ++ WND+ K SQ
Sbjct: 254 PLNIRIVLVGVEVWNDMDKCSVSQ 277
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 33.5 bits (75), Expect = 0.38
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 294 KSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLN----------PYAKTMRRNTILRQ 343
+SP R+ + +R L ++PL + + M + ++K R ++ R
Sbjct: 322 RSPSPYGRRRSSSPFLSKRSLSRSPLPSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRH 381
Query: 344 ARNHKLRVDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGV-KKQKKPLVGKKAA 402
+ +R+ ++ A L K E+AA A + GK+ K + V + +K+ + K +
Sbjct: 382 SSISPVRLPLNSSLGAELSRKKKERAAAAAAAKMDGKESKGSPVFLPRKENSSVEAKDSG 441
Query: 403 ATKKPAPEKKPAEKK-PTTE 421
K P EK P TE
Sbjct: 442 LESKKLPRSVKLEKSAPDTE 461
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 33.5 bits (75), Expect = 0.38
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 294 KSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLN----------PYAKTMRRNTILRQ 343
+SP R+ + +R L ++PL + + M + ++K R ++ R
Sbjct: 322 RSPSPYGRRRSSSPFLSKRSLSRSPLPSRKSMKSRSRSPAYSRHSSSHSKKKRSSSRSRH 381
Query: 344 ARNHKLRVDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGV-KKQKKPLVGKKAA 402
+ +R+ ++ A L K E+AA A + GK+ K + V + +K+ + K +
Sbjct: 382 SSISPVRLPLNSSLGAELSRKKKERAAAAAAAKMDGKESKGSPVFLPRKENSSVEAKDSG 441
Query: 403 ATKKPAPEKKPAEKK-PTTE 421
K P EK P TE
Sbjct: 442 LESKKLPRSVKLEKSAPDTE 461
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 33.5 bits (75), Expect = 0.38
Identities = 38/150 (25%), Positives = 56/150 (37%), Gaps = 16/150 (10%)
Query: 290 SRILKSPEIQRA----LRAPRKKIHRRVLKKNPLKNLRIM-LKLNPYAKTMRRNTILRQA 344
SR SP ++R+ R+P H R ++ L R ++P T++ +
Sbjct: 395 SRSPYSPVLRRSGKSRSRSPYSSRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELN 454
Query: 345 RNHKLRVDKAAAAAAALQAKSDEKAAVAGKK---------PVVGKKGKKAAVGVKKQKKP 395
+N K R +AA AA A +A KAA A K P G A+ K
Sbjct: 455 KNKKARAAEAARAAEAAKAAEATKAAEAAAKAAKASNTSTPTKGNTETSASASQTNHVKD 514
Query: 396 LVGKKAAATKKPAPEKKPAEKKPTTEEKKP 425
+ KK P+P K + K P
Sbjct: 515 V--KKIKIEHAPSPSSGGTLKNDKAKTKPP 542
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 33.5 bits (75), Expect = 0.38
Identities = 38/150 (25%), Positives = 56/150 (37%), Gaps = 16/150 (10%)
Query: 290 SRILKSPEIQRA----LRAPRKKIHRRVLKKNPLKNLRIM-LKLNPYAKTMRRNTILRQA 344
SR SP ++R+ R+P H R ++ L R ++P T++ +
Sbjct: 395 SRSPYSPVLRRSGKSRSRSPYSSRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELN 454
Query: 345 RNHKLRVDKAAAAAAALQAKSDEKAAVAGKK---------PVVGKKGKKAAVGVKKQKKP 395
+N K R +AA AA A +A KAA A K P G A+ K
Sbjct: 455 KNKKARAAEAARAAEAAKAAEATKAAEAAAKAAKASNTSTPTKGNTETSASASQTNHVKD 514
Query: 396 LVGKKAAATKKPAPEKKPAEKKPTTEEKKP 425
+ KK P+P K + K P
Sbjct: 515 V--KKIKIEHAPSPSSGGTLKNDKAKTKPP 542
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 33.1 bits (74), Expect = 0.49
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 343 QARNHKLRVDKAAAAAAALQAKSDEKAAVAGKKPV-VGKKGKKAAVGVKKQKKPLVGKKA 401
+ R + R KAAA + +K+A AG K G + AA GVK Q K A
Sbjct: 119 RGRKPRRRGQKAAATGSKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKAA 178
Query: 402 AATKKPAPEKKP---AEKKPTTEEKK 424
AA K KKP K E+KK
Sbjct: 179 AAGAKSRSGKKPRRRGAKSRGDEDKK 204
Score = 31.2 bits (69), Expect = 1.9
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 14/100 (14%)
Query: 333 KTMRRNTILRQARNHKLRVDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKK- 391
K +RR + +LR K A A + + A G + G + K AA G K
Sbjct: 57 KKLRRQKAAAGGKKARLRGQKGAVAGKEARQHWQKAAGAGGAENRGGGEQKAAAAGTKSL 116
Query: 392 ----QKKPLVGKKAAATKKPAPEKKPAEKKPTTEEKKPAA 427
+K G+KAAAT KKP +K AA
Sbjct: 117 GGRGRKPRRRGQKAAAT---------GSKKPRWRAQKSAA 147
Score = 30.0 bits (66), Expect = 4.2
Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 368 KAAVAGKKPVVGKKGKKAAVGVKKQKKP-LVGKKAAATKKPAPEKKP---AEKKPTTEEK 423
KAA AG K G + K A VGVK +KK GKK K A K +KK E K
Sbjct: 334 KAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAK 393
Query: 424 K 424
+
Sbjct: 394 R 394
Score = 29.6 bits (65), Expect = 5.5
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 344 ARNHKLRVDKAAAAAAALQAKSDEKAA-VAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAA 402
++ + R K+AAA + + +KAA AG K G+K +KAA K + ++
Sbjct: 135 SKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRG 194
Query: 403 ATKKPAPEKKPAEKK 417
A + +KK +++
Sbjct: 195 AKSRGDEDKKGRQRE 209
Score = 29.3 bits (64), Expect = 7.1
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 342 RQARNHKLRVDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKA 401
++ R + KAAAA +KAAV G K KK ++ ++QK G K+
Sbjct: 323 KKPRRRGQKATKAAAAGTKRGGGGQQKAAVVGVKS--RKKQRRRGKKPRRQKASAAGAKS 380
Query: 402 ----------AATKKPAPEKKPAEKKPTTE-EKKPAA 427
A ++ KKP + P +K PAA
Sbjct: 381 RGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAA 417
Score = 28.9 bits (63), Expect = 9.3
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 350 RVDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAATKKP 407
R K AAAA A GK+P + K AA G + VG++A A KKP
Sbjct: 635 RGQKDAAAAEKAWATGATSRGSGGKQP---RWQKPAAAGSESSAAAAVGQEAEARKKP 689
>gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo
sapiens]
Length = 240
Score = 33.1 bits (74), Expect = 0.49
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 353 KAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAV-GVKKQKKP 395
KAAAA A +K GKKP G++G+KAAV G K +KKP
Sbjct: 194 KAAAAGAKSCNGGGKKLGRWGKKP--GRRGQKAAVTGAKSRKKP 235
>gi|4885373 histone cluster 1, H1a [Homo sapiens]
Length = 215
Score = 32.7 bits (73), Expect = 0.65
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 364 KSDEKAAVAGKKPVVGKKGKKA-AVGVKKQKKPLVGKKAAATKKPAPEKKP-AEKKPTTE 421
K ++KA+ KP K K A G K+ K G + K P KKP A +K +
Sbjct: 109 KLNKKASSVETKPGASKVATKTKATGASKKLKKATGASKKSVKTPKKAKKPAATRKSSKN 168
Query: 422 EKKP 425
KKP
Sbjct: 169 PKKP 172
Score = 30.0 bits (66), Expect = 4.2
Identities = 30/85 (35%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 354 AAAAAAALQAKSDEKAAVAGKKPV-VGKKGKKAAV---GVKKQKKPLVGKKAAATKKPAP 409
A A +K +KA A KK V KK KK A K KKP K K PA
Sbjct: 127 ATKTKATGASKKLKKATGASKKSVKTPKKAKKPAATRKSSKNPKKPKTVKPKKVAKSPAK 186
Query: 410 EK-------KPAEKKPTTEEKKPAA 427
K K KP T + K AA
Sbjct: 187 AKAVKPKAAKARVTKPKTAKPKKAA 211
>gi|169163639 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 32.3 bits (72), Expect = 0.84
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 381 KGKKAAVGVKKQKKP--LVGKKAAATKKPAPEKKPAEK 416
KG KA V + Q++P L K A T +P PEK PA+K
Sbjct: 11 KGDKAKVKNEPQRRPMRLSAKPAPPTPEPKPEKAPAKK 48
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 32.3 bits (72), Expect = 0.84
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 351 VDKAAAAAAALQAKSDEKAAVAGKKPVVGKKGKKAAVGVKKQKKPLVGKKAAA-TKKPAP 409
+DK A E A G+K KK KK +KK+KK KK TKK
Sbjct: 4 LDKGVAMEKVHVITEKESAWKRGRKKKTTKKKKKKKTTMKKKKKTTTKKKTTTKTKKRTT 63
Query: 410 EKKPAEKKPTTEEKK 424
K T E++K
Sbjct: 64 TTKKTTTTTTKEKEK 78
>gi|88954992 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 32.3 bits (72), Expect = 0.84
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 381 KGKKAAVGVKKQKKP--LVGKKAAATKKPAPEKKPAEK 416
KG KA V + Q++P L K A T +P PEK PA+K
Sbjct: 11 KGDKAKVKNEPQRRPMRLSAKPAPPTPEPKPEKAPAKK 48
>gi|88953166 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 32.3 bits (72), Expect = 0.84
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 381 KGKKAAVGVKKQKKP--LVGKKAAATKKPAPEKKPAEK 416
KG KA V + Q++P L K A T +P PEK PA+K
Sbjct: 11 KGDKAKVKNEPQRRPMRLSAKPAPPTPEPKPEKAPAKK 48
>gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens]
Length = 490
Score = 32.3 bits (72), Expect = 0.84
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 346 NHKLRVDKAAAAAAALQAKSDEKAAVAGKK------PVVGKKGKKAAVGVKKQKKPLVGK 399
N K+ + K A + AKS + GKK K + G +KKP + +
Sbjct: 378 NEKVEIQKHATGKKS-PAKSPNPSTPRGKKRKALPASETPKAAESETPGKSPEKKPKIKE 436
Query: 400 KAAATKKPAPEKKPAEKKPTTEEKK 424
+A K P+ KK A + P E K
Sbjct: 437 EAVKEKSPSLGKKDARQTPKKPEAK 461
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,374,242
Number of Sequences: 37866
Number of extensions: 742364
Number of successful extensions: 3732
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 3370
Number of HSP's gapped (non-prelim): 365
length of query: 427
length of database: 18,247,518
effective HSP length: 105
effective length of query: 322
effective length of database: 14,271,588
effective search space: 4595451336
effective search space used: 4595451336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.