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Search of human proteins with 163838631
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|163838631 retinoblastoma-associated protein 140 isoform a
[Homo sapiens]
(1512 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|163838631 retinoblastoma-associated protein 140 isoform a [Ho... 3026 0.0
gi|163838629 retinoblastoma-associated protein 140 isoform b [Ho... 2092 0.0
gi|148806891 hypothetical protein LOC54906 [Homo sapiens] 182 3e-45
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 42 0.004
gi|118600967 shroom family member 4 [Homo sapiens] 40 0.013
gi|110349721 titin isoform novex-3 [Homo sapiens] 37 0.14
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 37 0.14
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 37 0.19
gi|153791839 sodium channel associated protein 1 [Homo sapiens] 37 0.19
gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 37 0.19
gi|149944526 additional sex combs like 3 [Homo sapiens] 37 0.19
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 36 0.32
gi|24432032 zinc finger protein 503 [Homo sapiens] 36 0.32
gi|223972612 Crm, cramped-like [Homo sapiens] 35 0.42
gi|57232746 nuclear receptor interacting protein 1 [Homo sapiens] 35 0.42
gi|190341068 forkhead-associated (FHA) phosphopeptide binding do... 35 0.42
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 35 0.42
gi|169203012 PREDICTED: similar to hCG1820409 [Homo sapiens] 35 0.72
gi|113423021 PREDICTED: similar to hCG1820409 [Homo sapiens] 35 0.72
gi|113422497 PREDICTED: similar to hCG1820409 [Homo sapiens] 35 0.72
gi|4502443 dystonin isoform 1e precursor [Homo sapiens] 35 0.72
gi|30794488 kinesin family member 27 [Homo sapiens] 35 0.72
gi|239754599 PREDICTED: hypothetical protein [Homo sapiens] 34 0.94
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 34 0.94
gi|15721939 metastatic lymph node 51 [Homo sapiens] 34 0.94
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 34 1.2
gi|194097341 period 1 [Homo sapiens] 34 1.2
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 34 1.2
gi|19923352 NK3 homeobox 1 [Homo sapiens] 34 1.2
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 34 1.2
>gi|163838631 retinoblastoma-associated protein 140 isoform a [Homo
sapiens]
Length = 1512
Score = 3026 bits (7844), Expect = 0.0
Identities = 1512/1512 (100%), Positives = 1512/1512 (100%)
Query: 1 MATAVETEACQPTDASWESGGGGDDEMKQALPELESSQQNGGGGGLNIAEPSGGAGREEN 60
MATAVETEACQPTDASWESGGGGDDEMKQALPELESSQQNGGGGGLNIAEPSGGAGREEN
Sbjct: 1 MATAVETEACQPTDASWESGGGGDDEMKQALPELESSQQNGGGGGLNIAEPSGGAGREEN 60
Query: 61 AGAEAAQSLSHEQPQDSSEAGAAALPRGPEEPERPVRRSFQIPRKSREKKALFQPLTPGS 120
AGAEAAQSLSHEQPQDSSEAGAAALPRGPEEPERPVRRSFQIPRKSREKKALFQPLTPGS
Sbjct: 61 AGAEAAQSLSHEQPQDSSEAGAAALPRGPEEPERPVRRSFQIPRKSREKKALFQPLTPGS 120
Query: 121 REFEDVVNILHSSYLEPTSVTNFNYRRACLVHNELLEKEFTEKRRELKFDGRLDKELSES 180
REFEDVVNILHSSYLEPTSVTNFNYRRACLVHNELLEKEFTEKRRELKFDGRLDKELSES
Sbjct: 121 REFEDVVNILHSSYLEPTSVTNFNYRRACLVHNELLEKEFTEKRRELKFDGRLDKELSES 180
Query: 181 YAFLMVDRYQVQTICEKGLHVGQSKITILGSPSMGVYLSRYADLLQANPLDTGAMGDVVI 240
YAFLMVDRYQVQTICEKGLHVGQSKITILGSPSMGVYLSRYADLLQANPLDTGAMGDVVI
Sbjct: 181 YAFLMVDRYQVQTICEKGLHVGQSKITILGSPSMGVYLSRYADLLQANPLDTGAMGDVVI 240
Query: 241 FKIMKGKIKSIYDPMGVKSLESMLNKSALDPTPKHECHVSKNANRITSLLAYRAYELTQY 300
FKIMKGKIKSIYDPMGVKSLESMLNKSALDPTPKHECHVSKNANRITSLLAYRAYELTQY
Sbjct: 241 FKIMKGKIKSIYDPMGVKSLESMLNKSALDPTPKHECHVSKNANRITSLLAYRAYELTQY 300
Query: 301 YFYEYGFDELRRRPRHVCPYAVVSFTYKDDIQTPKFVPSSRSNSFNTDRNIDKYNYTLWK 360
YFYEYGFDELRRRPRHVCPYAVVSFTYKDDIQTPKFVPSSRSNSFNTDRNIDKYNYTLWK
Sbjct: 301 YFYEYGFDELRRRPRHVCPYAVVSFTYKDDIQTPKFVPSSRSNSFNTDRNIDKYNYTLWK 360
Query: 361 GQLLNKGKLLCYISLRSATRAFLPIKLPEKLDVETVMSIDHLKQKIPPALFYKETYLGPN 420
GQLLNKGKLLCYISLRSATRAFLPIKLPEKLDVETVMSIDHLKQKIPPALFYKETYLGPN
Sbjct: 361 GQLLNKGKLLCYISLRSATRAFLPIKLPEKLDVETVMSIDHLKQKIPPALFYKETYLGPN 420
Query: 421 EVLKNGMYCSLYEVVEKTRIGSNMESLLQKLDREKLVLVKPLGDRGYLFLLSPYQMVPPY 480
EVLKNGMYCSLYEVVEKTRIGSNMESLLQKLDREKLVLVKPLGDRGYLFLLSPYQMVPPY
Sbjct: 421 EVLKNGMYCSLYEVVEKTRIGSNMESLLQKLDREKLVLVKPLGDRGYLFLLSPYQMVPPY 480
Query: 481 EYQTAKSRVLHALFLFQEPRSIVTSQKGSTNAAPQERHESMPDVLKIAQFLQFSLIQCRK 540
EYQTAKSRVLHALFLFQEPRSIVTSQKGSTNAAPQERHESMPDVLKIAQFLQFSLIQCRK
Sbjct: 481 EYQTAKSRVLHALFLFQEPRSIVTSQKGSTNAAPQERHESMPDVLKIAQFLQFSLIQCRK 540
Query: 541 EFKNISAINFHSVVEKYVSEFFKRGFGSGKREFIMFPYDSRLDDKKFLYSAPRNKSHIDT 600
EFKNISAINFHSVVEKYVSEFFKRGFGSGKREFIMFPYDSRLDDKKFLYSAPRNKSHIDT
Sbjct: 541 EFKNISAINFHSVVEKYVSEFFKRGFGSGKREFIMFPYDSRLDDKKFLYSAPRNKSHIDT 600
Query: 601 CLHAYIFRPEVYQLPICKLKELFEENRKLQQFSPLSDYEGQEEEMNGTKMKFGKRNNSRG 660
CLHAYIFRPEVYQLPICKLKELFEENRKLQQFSPLSDYEGQEEEMNGTKMKFGKRNNSRG
Sbjct: 601 CLHAYIFRPEVYQLPICKLKELFEENRKLQQFSPLSDYEGQEEEMNGTKMKFGKRNNSRG 660
Query: 661 EAIISGKQRSSHSLDYDKDRVKELINLIQCRKKSVGGDSDTEDMRSKTVLKRKLEDLPEN 720
EAIISGKQRSSHSLDYDKDRVKELINLIQCRKKSVGGDSDTEDMRSKTVLKRKLEDLPEN
Sbjct: 661 EAIISGKQRSSHSLDYDKDRVKELINLIQCRKKSVGGDSDTEDMRSKTVLKRKLEDLPEN 720
Query: 721 MRKLAKTSNLSENCHLYEESPQPIGSLGHDADLRRQQQDTCNSGIADIHRLFNWLSETLA 780
MRKLAKTSNLSENCHLYEESPQPIGSLGHDADLRRQQQDTCNSGIADIHRLFNWLSETLA
Sbjct: 721 MRKLAKTSNLSENCHLYEESPQPIGSLGHDADLRRQQQDTCNSGIADIHRLFNWLSETLA 780
Query: 781 NARHSDASLTDTVNKALGLSTDDAYEELRQKHEYELNSTPDKKDYEQPTCAKVENAQFKG 840
NARHSDASLTDTVNKALGLSTDDAYEELRQKHEYELNSTPDKKDYEQPTCAKVENAQFKG
Sbjct: 781 NARHSDASLTDTVNKALGLSTDDAYEELRQKHEYELNSTPDKKDYEQPTCAKVENAQFKG 840
Query: 841 TQSLLLEVDATSKYSVAISTSEVGTDHKLHLKEDPNLISVNNFEDCSLCPSVPIEHGFRR 900
TQSLLLEVDATSKYSVAISTSEVGTDHKLHLKEDPNLISVNNFEDCSLCPSVPIEHGFRR
Sbjct: 841 TQSLLLEVDATSKYSVAISTSEVGTDHKLHLKEDPNLISVNNFEDCSLCPSVPIEHGFRR 900
Query: 901 QQSKSNNVEETEIHWKLIPITGGNARSPEDQLGKHGEKQTPGMKSPEEQLVCVPPQEAFP 960
QQSKSNNVEETEIHWKLIPITGGNARSPEDQLGKHGEKQTPGMKSPEEQLVCVPPQEAFP
Sbjct: 901 QQSKSNNVEETEIHWKLIPITGGNARSPEDQLGKHGEKQTPGMKSPEEQLVCVPPQEAFP 960
Query: 961 NDPRVINRQRSSDYQFPSSPFTDTLKGTTEDDVLTGQVEEQCVPAAEAEPPAVSETTERT 1020
NDPRVINRQRSSDYQFPSSPFTDTLKGTTEDDVLTGQVEEQCVPAAEAEPPAVSETTERT
Sbjct: 961 NDPRVINRQRSSDYQFPSSPFTDTLKGTTEDDVLTGQVEEQCVPAAEAEPPAVSETTERT 1020
Query: 1021 VLGEYNLFSRKIEEILKQKNVSYVSTVSTPIFSTQEKMKRLSEFIYSKTSKAGVQEFVDG 1080
VLGEYNLFSRKIEEILKQKNVSYVSTVSTPIFSTQEKMKRLSEFIYSKTSKAGVQEFVDG
Sbjct: 1021 VLGEYNLFSRKIEEILKQKNVSYVSTVSTPIFSTQEKMKRLSEFIYSKTSKAGVQEFVDG 1080
Query: 1081 LHEKLNTIIIKASAKGGNLPPVSPNDSGAKIASNPLERHVIPVSSSDFNNKHLLEPLCSD 1140
LHEKLNTIIIKASAKGGNLPPVSPNDSGAKIASNPLERHVIPVSSSDFNNKHLLEPLCSD
Sbjct: 1081 LHEKLNTIIIKASAKGGNLPPVSPNDSGAKIASNPLERHVIPVSSSDFNNKHLLEPLCSD 1140
Query: 1141 PLKDTNSDEQHSTSALTEVEMNQPQHATELMVTSDHIVPGDMAREPVEETTKSPSDVNIS 1200
PLKDTNSDEQHSTSALTEVEMNQPQHATELMVTSDHIVPGDMAREPVEETTKSPSDVNIS
Sbjct: 1141 PLKDTNSDEQHSTSALTEVEMNQPQHATELMVTSDHIVPGDMAREPVEETTKSPSDVNIS 1200
Query: 1201 AQPALSNFISQLEPEVFNSLVKIMKDVQKNTVKFYIHEEEESVLCKEIKEYLIKLGNTEC 1260
AQPALSNFISQLEPEVFNSLVKIMKDVQKNTVKFYIHEEEESVLCKEIKEYLIKLGNTEC
Sbjct: 1201 AQPALSNFISQLEPEVFNSLVKIMKDVQKNTVKFYIHEEEESVLCKEIKEYLIKLGNTEC 1260
Query: 1261 HPEQFLERRSKLDKLLIIIQNEDIAGFIHKIPGLVTLKKLPCVSFAGVDSLDDVKNHTYN 1320
HPEQFLERRSKLDKLLIIIQNEDIAGFIHKIPGLVTLKKLPCVSFAGVDSLDDVKNHTYN
Sbjct: 1261 HPEQFLERRSKLDKLLIIIQNEDIAGFIHKIPGLVTLKKLPCVSFAGVDSLDDVKNHTYN 1320
Query: 1321 ELFVSGGFIVSDESILNPEVVTVENLKNFLTFLEELSTPEGKWQWKVHCKFQKKLKELGR 1380
ELFVSGGFIVSDESILNPEVVTVENLKNFLTFLEELSTPEGKWQWKVHCKFQKKLKELGR
Sbjct: 1321 ELFVSGGFIVSDESILNPEVVTVENLKNFLTFLEELSTPEGKWQWKVHCKFQKKLKELGR 1380
Query: 1381 LNAKALSLLTLLNVYQKKHLVEILSYHNCDSQTRNAPELDCLIRLQAQNIQQRHIVFLTE 1440
LNAKALSLLTLLNVYQKKHLVEILSYHNCDSQTRNAPELDCLIRLQAQNIQQRHIVFLTE
Sbjct: 1381 LNAKALSLLTLLNVYQKKHLVEILSYHNCDSQTRNAPELDCLIRLQAQNIQQRHIVFLTE 1440
Query: 1441 KNIKMLSSYTDNGIVVATAEDFMQNFKNLVGYHNSITEENLPQLGANENLESQSDAVLTL 1500
KNIKMLSSYTDNGIVVATAEDFMQNFKNLVGYHNSITEENLPQLGANENLESQSDAVLTL
Sbjct: 1441 KNIKMLSSYTDNGIVVATAEDFMQNFKNLVGYHNSITEENLPQLGANENLESQSDAVLTL 1500
Query: 1501 TPLELGVGISQH 1512
TPLELGVGISQH
Sbjct: 1501 TPLELGVGISQH 1512
>gi|163838629 retinoblastoma-associated protein 140 isoform b [Homo
sapiens]
Length = 1233
Score = 2092 bits (5420), Expect = 0.0
Identities = 1057/1098 (96%), Positives = 1057/1098 (96%), Gaps = 41/1098 (3%)
Query: 397 MSIDHLKQKIPPALFYKETYLGPNEVLKNGMYCSLYEVVEKTRIGSNMESLLQKLDREKL 456
MSIDHLKQKIPPALFYKETYLGPNEVLKNGMYCSLYEVVEKTRIGSNMESLLQKLDREKL
Sbjct: 1 MSIDHLKQKIPPALFYKETYLGPNEVLKNGMYCSLYEVVEKTRIGSNMESLLQKLDREKL 60
Query: 457 VLVKPLGDRGYLFLLSPYQMVPPYEYQTAKSRVLHALFLFQEPRSIVTSQKGSTNAAPQE 516
VLVKPLGDRGYLFLLSPYQMVPPYEYQTAKSRVLHALFLFQEPRSIVTSQKGSTNAAPQE
Sbjct: 61 VLVKPLGDRGYLFLLSPYQMVPPYEYQTAKSRVLHALFLFQEPRSIVTSQKGSTNAAPQE 120
Query: 517 RHESMPDVLKIAQFLQFSLIQCRKEFKNISAINFHSVVEKYVSEFFKRGFGSGKREFIMF 576
RHESMPDVLKIAQFLQFSLIQCRKEFKNISAINFHSVVEKYVSEFFKRGFGSGKREFIMF
Sbjct: 121 RHESMPDVLKIAQFLQFSLIQCRKEFKNISAINFHSVVEKYVSEFFKRGFGSGKREFIMF 180
Query: 577 PYDSRLDDKKFLYSAPRNKSHIDTCLHAYIFRPEVYQLPICKLKELFEENRKLQQFSPLS 636
PYDSRLDDKKFLYSAPRNKSHIDTCLHAYIFRPEVYQLPICKLKELFEENRKLQQFSPLS
Sbjct: 181 PYDSRLDDKKFLYSAPRNKSHIDTCLHAYIFRPEVYQLPICKLKELFEENRKLQQFSPLS 240
Query: 637 DYEGQEEEMNGTKMKFGKRNNSRGEAIISGKQRSSHSLDYDKDRVKELINLIQCRKKSVG 696
DYEGQEEEMNGTKMKFGKRNNSRGEAIISGKQRSSHSLDYDKDRVKELINLIQCRKKSVG
Sbjct: 241 DYEGQEEEMNGTKMKFGKRNNSRGEAIISGKQRSSHSLDYDKDRVKELINLIQCRKKSVG 300
Query: 697 GDSDTEDMRSKTVLKRKLEDLPENMRKLAKTSNLSENCHLYEESPQPIGSLGHDADLRRQ 756
GDSDTEDMRSKTVLKRKLEDLPENMRKLAKTSNLSENCHLYEESPQPIGSLGHDADLRRQ
Sbjct: 301 GDSDTEDMRSKTVLKRKLEDLPENMRKLAKTSNLSENCHLYEESPQPIGSLGHDADLRRQ 360
Query: 757 QQDTCNSGIADIHRLFNWLSETLANARHSDASLTDTVNKALGLSTDDAYEELRQKHEYEL 816
QQDTCNSGIADIHRLFNWLSETLANARHSDASLTDTVNKALGLSTDDAYEELRQKHEYEL
Sbjct: 361 QQDTCNSGIADIHRLFNWLSETLANARHSDASLTDTVNKALGLSTDDAYEELRQKHEYEL 420
Query: 817 NSTPDKKDYEQPTCAKVENAQFKGTQSLLLEVDATSKYSVAISTSEVGTDHKLHLKEDPN 876
NSTPDKKDYEQPTCAKVENAQFKGTQSLLLEVDATSKYSVAISTSEVGTDHKLHLKEDPN
Sbjct: 421 NSTPDKKDYEQPTCAKVENAQFKGTQSLLLEVDATSKYSVAISTSEVGTDHKLHLKEDPN 480
Query: 877 LISVNNFEDCSLCPSVPIEHGFRRQQSKSNNVEETEIHWKLIPITGGNARSPEDQLGKHG 936
LISVNNFEDCSLCPSVPIEHGFRRQQSKSNNVEETEIHWKLIPITGGNARSPEDQLGKHG
Sbjct: 481 LISVNNFEDCSLCPSVPIEHGFRRQQSKSNNVEETEIHWKLIPITGGNARSPEDQLGKHG 540
Query: 937 EKQTPGMKSPEEQLVCVPPQEAFPNDPRVINRQRSSDYQFPSSPFTDTLKGTTEDDVLTG 996
EKQTP DTLKGTTEDDVLTG
Sbjct: 541 EKQTP-----------------------------------------DTLKGTTEDDVLTG 559
Query: 997 QVEEQCVPAAEAEPPAVSETTERTVLGEYNLFSRKIEEILKQKNVSYVSTVSTPIFSTQE 1056
QVEEQCVPAAEAEPPAVSETTERTVLGEYNLFSRKIEEILKQKNVSYVSTVSTPIFSTQE
Sbjct: 560 QVEEQCVPAAEAEPPAVSETTERTVLGEYNLFSRKIEEILKQKNVSYVSTVSTPIFSTQE 619
Query: 1057 KMKRLSEFIYSKTSKAGVQEFVDGLHEKLNTIIIKASAKGGNLPPVSPNDSGAKIASNPL 1116
KMKRLSEFIYSKTSKAGVQEFVDGLHEKLNTIIIKASAKGGNLPPVSPNDSGAKIASNPL
Sbjct: 620 KMKRLSEFIYSKTSKAGVQEFVDGLHEKLNTIIIKASAKGGNLPPVSPNDSGAKIASNPL 679
Query: 1117 ERHVIPVSSSDFNNKHLLEPLCSDPLKDTNSDEQHSTSALTEVEMNQPQHATELMVTSDH 1176
ERHVIPVSSSDFNNKHLLEPLCSDPLKDTNSDEQHSTSALTEVEMNQPQHATELMVTSDH
Sbjct: 680 ERHVIPVSSSDFNNKHLLEPLCSDPLKDTNSDEQHSTSALTEVEMNQPQHATELMVTSDH 739
Query: 1177 IVPGDMAREPVEETTKSPSDVNISAQPALSNFISQLEPEVFNSLVKIMKDVQKNTVKFYI 1236
IVPGDMAREPVEETTKSPSDVNISAQPALSNFISQLEPEVFNSLVKIMKDVQKNTVKFYI
Sbjct: 740 IVPGDMAREPVEETTKSPSDVNISAQPALSNFISQLEPEVFNSLVKIMKDVQKNTVKFYI 799
Query: 1237 HEEEESVLCKEIKEYLIKLGNTECHPEQFLERRSKLDKLLIIIQNEDIAGFIHKIPGLVT 1296
HEEEESVLCKEIKEYLIKLGNTECHPEQFLERRSKLDKLLIIIQNEDIAGFIHKIPGLVT
Sbjct: 800 HEEEESVLCKEIKEYLIKLGNTECHPEQFLERRSKLDKLLIIIQNEDIAGFIHKIPGLVT 859
Query: 1297 LKKLPCVSFAGVDSLDDVKNHTYNELFVSGGFIVSDESILNPEVVTVENLKNFLTFLEEL 1356
LKKLPCVSFAGVDSLDDVKNHTYNELFVSGGFIVSDESILNPEVVTVENLKNFLTFLEEL
Sbjct: 860 LKKLPCVSFAGVDSLDDVKNHTYNELFVSGGFIVSDESILNPEVVTVENLKNFLTFLEEL 919
Query: 1357 STPEGKWQWKVHCKFQKKLKELGRLNAKALSLLTLLNVYQKKHLVEILSYHNCDSQTRNA 1416
STPEGKWQWKVHCKFQKKLKELGRLNAKALSLLTLLNVYQKKHLVEILSYHNCDSQTRNA
Sbjct: 920 STPEGKWQWKVHCKFQKKLKELGRLNAKALSLLTLLNVYQKKHLVEILSYHNCDSQTRNA 979
Query: 1417 PELDCLIRLQAQNIQQRHIVFLTEKNIKMLSSYTDNGIVVATAEDFMQNFKNLVGYHNSI 1476
PELDCLIRLQAQNIQQRHIVFLTEKNIKMLSSYTDNGIVVATAEDFMQNFKNLVGYHNSI
Sbjct: 980 PELDCLIRLQAQNIQQRHIVFLTEKNIKMLSSYTDNGIVVATAEDFMQNFKNLVGYHNSI 1039
Query: 1477 TEENLPQLGANENLESQS 1494
TEENLPQLGANENLESQS
Sbjct: 1040 TEENLPQLGANENLESQS 1057
>gi|148806891 hypothetical protein LOC54906 [Homo sapiens]
Length = 2430
Score = 182 bits (461), Expect = 3e-45
Identities = 136/465 (29%), Positives = 232/465 (49%), Gaps = 22/465 (4%)
Query: 1015 ETTERTVLGEYNLFSRKIEEILKQKNVSYVSTVSTPIFSTQEKMK-RLSEFIYSKTSKAG 1073
+ T+ T+ EY F+ K+++ +K + + S S +F + + + F +K S+A
Sbjct: 1969 DLTQNTLDLEYLRFAHKLKQTIKNGDSQH-SASSANVFPKESPTQISIGAFPSTKISEAP 2027
Query: 1074 VQEFVDGLHEKLNTIIIKASAKGGNLPPVSPNDSGAKIASNPLER--HVIPVSSSDFNNK 1131
L ++++ + P S +S+ ER H + +S N+
Sbjct: 2028 FLHPAPRSRSPLLVTVVESDPRPQGQPRRGYTASSLDSSSSWRERCSHNRDLRNSQRNHT 2087
Query: 1132 ---HLLEPLCSDPLKDTNSDEQHSTSALTEVEMNQPQHATELMVTSDHIVPGDMAREPVE 1188
HL + + +K++ +D + +N+ ++M S+ + D V
Sbjct: 2088 VSFHLNKLKYNSTVKESRND--------ISLILNEYAEFNKVMKNSNQFIFQDKELNDVS 2139
Query: 1189 -ETTKSPSDVNISAQPA-LSNFISQLEPEVFNSLVKIMKDVQKNTVKFYIHEEEESVLCK 1246
E T + + A + I + + L ++K+ K+T FY+ E E+
Sbjct: 2140 GEATAQEMYLPFPGRSASYEDIIIDVCTNLHVKLRSVVKEACKSTFLFYLVETEDKSFFV 2199
Query: 1247 EIKEYLIKLGNTECHPEQFLER-RSKLDKLLIIIQNEDIAGFIHKIPGLVTLKKLPCVSF 1305
K L K G+TE P+ F + + D L+III+NEDI+ +H+IP L+ LK P V F
Sbjct: 2200 RTKNLLRKGGHTEIEPQHFCQAFHRENDTLIIIIRNEDISSHLHQIPSLLKLKHFPSVIF 2259
Query: 1306 AGVDSLDDVKNHTYNELFVSGGFIVSDESILNPEVVTVENLKNFLTFLEELSTPEGKWQW 1365
AGVDS DV +HTY ELF +GGF++SD+ IL E VT+ LK + LE+L+ G+W+W
Sbjct: 2260 AGVDSPGDVLDHTYQELFRAGGFVISDDKIL--EAVTLVQLKEIIKILEKLN-GNGRWKW 2316
Query: 1366 KVHCKFQKKLKELGRLNAKALSLLTLLNVYQKKHLVEILSYHNCDSQTRNAPE-LDCLIR 1424
+H + KKLKE R+++ A +L +Q +++E+L YH CDS++ E L CL+
Sbjct: 2317 LLHYRENKKLKEDERVDSTAHKKNIMLKSFQSANIIELLHYHQCDSRSSTKAEILKCLLN 2376
Query: 1425 LQAQNIQQRHIVFLTEKNIKMLSSYTDNGIVVATAEDFMQNFKNL 1469
LQ Q+I R V LT+K + ++GI+V +F++N + +
Sbjct: 2377 LQIQHIDARFAVLLTDKPTIPREVFENSGILVTDVNNFIENIEKI 2421
Score = 96.7 bits (239), Expect = 2e-19
Identities = 76/278 (27%), Positives = 133/278 (47%), Gaps = 24/278 (8%)
Query: 359 WKGQLLNKGKLLCYISLRSATRAFLPIKLPEKLDVETVMSIDHLKQKIPPALFYKETYLG 418
WKG+L+ + ++LC I+L S A +P +LP++LD + VM + LK+++P A F K+ YL
Sbjct: 21 WKGKLIVQDRMLCDIALWSTYGAMIPTQLPQELDFKYVMKVSSLKKRLPEAAFRKQNYL- 79
Query: 419 PNEVLKNGMYCSLYEVVEKTRIGSNMESLLQKLDREKLVLVKPLGDRGYLFLLSPYQMVP 478
+V + +LYEV R G N++ L + + ++L ++K L DRG+ LL+ ++
Sbjct: 80 EEKVCFQDLCFNLYEVELSNRQGENIDKLTECIKNKQLAIIKCLEDRGFFILLTSSALLS 139
Query: 479 PYEYQTAKSRVLHALFLFQEPRSIVTSQKGSTNAAPQERHESMPDVLKIAQFLQFSLIQC 538
++ K LH L LF+ P S E SM V+ I L +L++
Sbjct: 140 EPDF-GGKQMGLHGLHLFRSPLST------GVKDLKVEDDISM-KVIPILSTLNCALLET 191
Query: 539 RKEFKNISAINFHSVVEKYVSEFFKRGFGSGKREFIMFPYDSRLDDKKFLYSAP------ 592
+K I+ +++V+++ E +K + + + R+ D FL P
Sbjct: 192 KKSLPE-ERIHPNTLVKRHFQELYK----ADRSPSLSVAPQDRMKDPTFLGKLPSGFDLI 246
Query: 593 ----RNKSHIDTCLHAYIFRPEVYQLPICKLKELFEEN 626
+ S T L++Y P Y L + +L E+
Sbjct: 247 PPAEKCPSESLTQLNSYFSDPSAYILEVSTALDLLAEH 284
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 42.0 bits (97), Expect = 0.004
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 14 DASWESGGGGDDEMKQALPELESSQQNGGGGGLNIAEPSGGAGREENAGAEAAQSLSHEQ 73
+A GG G D P E+ + GGG G + A S +G AE++ S +
Sbjct: 2002 EADDAEGGDGTD------PGTETEESMGGGEGNHRAADSQNSGEGNTGAAESSFSQEVSR 2055
Query: 74 PQDSSEAGAAALPRGPEEPERP 95
Q S A PR P+ P RP
Sbjct: 2056 EQQPSSASERQAPRAPQSPRRP 2077
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 40.4 bits (93), Expect = 0.013
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 44 GGLNIAEPSGGAGREENAGAEAAQSLSHEQPQDSSEAGAAALPRGPEEPERPVRR-SFQI 102
G N+AE SGG+ R N G S +PQ+ ++G A RGP +P PVRR S Q
Sbjct: 229 GRPNVAETSGGS-RRTNGGHLTPSSQMSSRPQEGYQSGPAKAVRGPPQP--PVRRDSLQA 285
Query: 103 PRK---SREKKALFQPLTP 118
R + E++ +P+ P
Sbjct: 286 SRAQLLNGEQRRASEPVVP 304
>gi|110349721 titin isoform novex-3 [Homo sapiens]
Length = 5604
Score = 37.0 bits (84), Expect = 0.14
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 33/192 (17%)
Query: 871 LKEDPNLISVNN---FEDCSLCPSVPIEHGFRRQQSKSNNVEETEIHWKLIPITGGNARS 927
LK D +L S + E C+L P+ S ++EET++ K P+ G RS
Sbjct: 4715 LKTDLSLKSFSEEIYSESCALLPT------------SSADIEETDLSEKSCPLENG-GRS 4761
Query: 928 PEDQLGKHGEKQTP-GMKSPEEQLVCVPPQEAFPNDPRVINRQRSSDYQFPSSPFTDTLK 986
L K ++ P G+ EE+ P AFP +Q ++ + D
Sbjct: 4762 SISHLKKAASEEKPLGVGEMEEECTLEPELAAFP-------KQDGGTQEYTDATLEDHRG 4814
Query: 987 GTTEDDVLTGQVE-EQCVP---AAEAEPPAVSETTERTVLGEYNLFSRKIEEILKQKNVS 1042
E D L Q+ QC P E + P +T GE + EE+ Q S
Sbjct: 4815 DVQEADTLHRQLSLSQCFPLLMTEEQQNPGEQISTNIHASGEEKCY----EEVQVQNEAS 4870
Query: 1043 YVSTVSTPIFST 1054
+ ST+ + T
Sbjct: 4871 F-STLEGEMIET 4881
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 37.0 bits (84), Expect = 0.14
Identities = 56/269 (20%), Positives = 101/269 (37%), Gaps = 33/269 (12%)
Query: 619 LKELFEENRKLQQFSPLSDYEGQEEEMNGTKMKFGKRNNSRGEAIISGKQRSSHSLDYDK 678
+ EL E+ LQ+ + E E +M + +S EAI K +
Sbjct: 1203 MAELGEQIDNLQRVKQKLEKEKSELKMETDDL------SSNAEAISKAKGNLEKMCRSLE 1256
Query: 679 DRVKELINLIQCRKKSVGGDSDTEDMRSKTVLKRKLEDLPE--------NMRKLAKTSNL 730
D+V EL + +++ + D + R +T L E + K A T +
Sbjct: 1257 DQVSELKTKEEEQQRLIN-DLTAQRARLQTEAGEYSRQLDEKDALVSQLSRSKQASTQQI 1315
Query: 731 SENCHLYEESPQPIGSLGH-------DADLRRQQQDTCNSGIADIHRLFNWLSETLANAR 783
E H EE + +L H D DL R+Q + G A++ R + + +A R
Sbjct: 1316 EELKHQLEEETKAKNALAHALQSSRHDCDLLREQYEEEQEGKAELQRALSKANSEVAQWR 1375
Query: 784 HSDASLTDTVNKALGLSTDDAYEELRQKHEYELNSTPDKKDYEQPTCAKVENAQFK---G 840
TD + + + EE ++K L + + CA +E + +
Sbjct: 1376 TKYE--TDAIQRT------EELEEAKKKLAQRLQEAEEHVEAVNAKCASLEKTKQRLQNE 1427
Query: 841 TQSLLLEVDATSKYSVAISTSEVGTDHKL 869
+ L+L+V+ ++ A+ + D L
Sbjct: 1428 VEDLMLDVERSNAACAALDKKQRNFDKVL 1456
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 36.6 bits (83), Expect = 0.19
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 11 QPTDASWESGGGGDDEMKQALPELESSQQNGGGGGLNIAEPSGGAGREENAGAEAAQSLS 70
Q D+S S ++A SQ G ++P G G E N+ +E+++S S
Sbjct: 9 QEEDSSLHSNASSHSASEEASGSDSGSQSESEQG----SDPGSGHGSESNSSSESSESQS 64
Query: 71 HEQPQDSSEAGAAALPRGPEEPERPVRRSFQI 102
+S AG+ + P PE E+P + +I
Sbjct: 65 E---SESESAGSKSQPVLPEAKEKPASKKERI 93
>gi|153791839 sodium channel associated protein 1 [Homo sapiens]
Length = 688
Score = 36.6 bits (83), Expect = 0.19
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 16/157 (10%)
Query: 766 ADIHRLFNWLSETLANARHSD---ASLTDTVNKALGLSTDDA-----YEELRQKHEYELN 817
+D +L L + R D LT N+ L TD + Y+E+ QK + L
Sbjct: 441 SDYRKLEEMHQRFLVSERSKDDLQLRLTRAENRIKQLETDSSEEISRYQEMIQKLQNVLE 500
Query: 818 STPDKKDY--EQPTCAKVENAQF-KGTQSLL-LEVDATSKYSVAISTSEVGTDHKLHLKE 873
S + EQ + EN Q K T+SL + ++A K V IST E H+ +KE
Sbjct: 501 SERENCGLVSEQRLKLQQENKQLRKETESLRKIALEAQKKAKVKISTME----HEFSIKE 556
Query: 874 DPNLISVNNFEDCSLCPSVPIEHGFRRQQSKSNNVEE 910
+ + ED + V + H QQ +N +E
Sbjct: 557 RGFEVQLREMEDSNRNSIVELRHLLATQQKAANRWKE 593
>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
[Homo sapiens]
Length = 501
Score = 36.6 bits (83), Expect = 0.19
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 11 QPTDASWESGGGGDDEMKQALPELESSQQNGGGGGLNIAEPSGGAGREENAGAEAAQSLS 70
Q D+S S ++A SQ G ++P G G E N+ +E+++S S
Sbjct: 9 QEEDSSLHSNASSHSASEEASGSDSGSQSESEQG----SDPGSGHGSESNSSSESSESQS 64
Query: 71 HEQPQDSSEAGAAALPRGPEEPERPVRRSFQI 102
+S AG+ + P PE E+P + +I
Sbjct: 65 E---SESESAGSKSQPVLPEAKEKPASKKERI 93
>gi|149944526 additional sex combs like 3 [Homo sapiens]
Length = 2248
Score = 36.6 bits (83), Expect = 0.19
Identities = 52/260 (20%), Positives = 106/260 (40%), Gaps = 13/260 (5%)
Query: 967 NRQRSSDYQFPSSPFTDTLKGTTEDDVLTGQVEEQCVPAAEAEPPA-VSETTERTVLGEY 1025
N++ S+D F +S ++ +T ++ + +EA P + + T+E + + +
Sbjct: 663 NQRNSTDENFHASLMSEISPISTSPEISEASLMSNLPLTSEASPVSNLPLTSETSPMSDL 722
Query: 1026 NLFSR--KIEEILKQKNVSYVSTVSTPIFSTQEKMKRLSEFIYSKTSKA-GVQEFVDGLH 1082
L S + +L ++VS++ P ++ ++E + + K+ V E + L
Sbjct: 723 PLTSETSSVSSMLLTSETTFVSSLPLPSETSPISNSSINERMAHQQRKSPSVSE--EPLS 780
Query: 1083 EKLNTIIIKASAKGGNLPPVSPNDSGAK----IASNPLERHVIPVSSSDFNNKHLLEPLC 1138
+ + A G NL N S ++S+ + P S D +NK L + C
Sbjct: 781 PQKDESSATAKPLGENLTSQQKNLSNTPEPIIMSSSSIAPEAFP--SEDLHNKTLSQQTC 838
Query: 1139 SDPLKDTNSDEQHSTSALTEVEMNQPQHATELMVTSDHIVPGDMAREPVEETTKSPSDVN 1198
+ DT S L EM + ++ + L T ++P + E T + +
Sbjct: 839 KSHV-DTEKPYPASIPELASTEMIKVKNHSVLQRTEKKVLPSPLELSVFSEGTDNKGNEL 897
Query: 1199 ISAQPALSNFISQLEPEVFN 1218
SA+ +IS ++ F+
Sbjct: 898 PSAKLQDKQYISSVDKAPFS 917
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 35.8 bits (81), Expect = 0.32
Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 29/209 (13%)
Query: 668 QRSSHSLDYDKDRVK----ELINLIQCRKKSVGGDSDTEDMRSKTVLKRKLEDLPENMRK 723
QRS L K R++ EL ++ ++ V S RSK ++ E+L + +
Sbjct: 1268 QRSLSELTTQKSRLQTEAGELSRQLEEKESIVSQLS-----RSKQAFTQQTEELKRQLEE 1322
Query: 724 LAKTSNLSENCHLYEESPQPIGSLGHDADLRRQQQDTCNSGIADIHRLFNWLSETLANAR 783
K N + + S HD DL R+Q + G A++ R + + +A R
Sbjct: 1323 ENKAKNALAHA---------LQSSRHDCDLLREQYEEEQEGKAELQRALSKANSEVAQWR 1373
Query: 784 HSDASLTDTVNKALGLSTDDAYEELRQKHEYELNSTPDKKDYEQPTCAKVENAQFK---G 840
TD + + + EE ++K L + ++ + CA +E + +
Sbjct: 1374 TKYE--TDAIQRT------EELEEAKKKLAQRLQDSEEQVEAVNAKCASLEKTKQRLQGE 1425
Query: 841 TQSLLLEVDATSKYSVAISTSEVGTDHKL 869
+ L+++V+ + + A+ + D L
Sbjct: 1426 VEDLMVDVERANSLAAALDKKQRNFDKVL 1454
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 35.8 bits (81), Expect = 0.32
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 30 ALPELESSQQNGGGGGLNIAEPSGGAGREENAGAEAAQSLSHEQPQDSSEAGAAALPRGP 89
+L L SS+ +GGGGG GG G + A A S SS AG+
Sbjct: 6 SLSALRSSKHSGGGGG------GGGGGGADPAWTSALSGNSSGPGPGSSPAGSTKPFVHA 59
Query: 90 EEPERPVRRSFQIPRKSREKKALFQPLTPGSREFEDVVNILHSSYLEPTSVT 141
P P+R++ ++P K + + LT + +ILH YL+P T
Sbjct: 60 VPPSDPLRQANRLPIK------VLKMLTARTG------HILHPEYLQPLPST 99
>gi|223972612 Crm, cramped-like [Homo sapiens]
Length = 1269
Score = 35.4 bits (80), Expect = 0.42
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 20 GGGGDDEMKQALPEL--ESSQQNGGGGGLNIAEPSGGAGREENAGAEAAQSLSHEQPQDS 77
GG G+D +K+ E S + G GG + AE S G R+E A P
Sbjct: 8 GGSGEDGLKKLGKRAADEESLEGEGAGGADAAEESSGTKRDEKTPRAGADG----PPAPP 63
Query: 78 SEAGAAALPRGPEEPERPVRRSFQIPRKSREKK 110
A + P+G + + RS P+ R +K
Sbjct: 64 GAPQAPSPPQGSPQDQHHFLRSSVRPQSKRPRK 96
>gi|57232746 nuclear receptor interacting protein 1 [Homo sapiens]
Length = 1158
Score = 35.4 bits (80), Expect = 0.42
Identities = 54/262 (20%), Positives = 103/262 (39%), Gaps = 38/262 (14%)
Query: 994 LTGQVEEQCVPAAEAEPPAVSETTERTVLGEYNLFSRKIEEILKQKNVSYVSTVSTPIFS 1053
+ VE++ PA +P + E +L E LK +N + ++
Sbjct: 243 VASMVEKRASPATSPKPSVACSQLALLLSSEAHLQQYSREHALKTQNANQAAS------- 295
Query: 1054 TQEKMKRLSEFIYSKTSKAGVQEFVDGLHEKLN---------TIIIKASAKGGNLP---- 1100
E++ ++ + G + G+ LN + K+SA P
Sbjct: 296 --ERLAAMARLQENGQKDVGSYQLPKGMSSHLNGQARTSSSKLMASKSSATVFQNPMGII 353
Query: 1101 PVSPNDSGAKIASNPLERHVIPVSSSDFNNKHLLE------PLCSDPLKDTNS--DEQHS 1152
P SP ++G K N LER+ I ++++ HLL+ P+ + S +E +
Sbjct: 354 PSSPKNAGYK---NSLERNNIKQAANNSLLLHLLKSQTIPKPMNGHSHSERGSIFEESST 410
Query: 1153 TSALTEVEMNQPQHATELM---VTSDHIVPGDMAREPVEETTKSPSDVNISAQPALSNFI 1209
+ + E N P + + + VP D++ + T KS SD +S + +
Sbjct: 411 PTTIDEYSDNNPSFTDDSSGDESSYSNCVPIDLSCK--HRTEKSESDQPVSLDNFTQSLL 468
Query: 1210 SQLEPEVFNSLVKIMKDVQKNT 1231
+ +P+V + +K +D KN+
Sbjct: 469 NTWDPKVPDVDIKEDQDTSKNS 490
>gi|190341068 forkhead-associated (FHA) phosphopeptide binding
domain 1 [Homo sapiens]
Length = 1412
Score = 35.4 bits (80), Expect = 0.42
Identities = 34/175 (19%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 639 EGQEEEMNGTKMKFGKRNNSRGEAIISGKQRSSHSLDYDKDRVKELINLIQCRKKSVGGD 698
E + + M + ++ + ++I K R +L+ ++ RV+EL + +K+ +
Sbjct: 706 EEERKRMQELESLLAQQKKALAKSITQEKNRVKEALEEEQTRVQELEERLARQKEVLESS 765
Query: 699 SDTEDMRSKTVL---KRKLEDLPENM--RKLAKTSNLSENCHLYEESPQP---------- 743
E ++K L KRK++DL ++ +K SN++ +E+ +
Sbjct: 766 IAHEKRKAKEALESEKRKVQDLENHLTQQKEISESNIAYEKRKAKEAMEKEKKKVQDLEN 825
Query: 744 -IGSLGHDADLRRQQQDTCNSGIADIHRLFNWLSETLANARHSDASLTDTVNKAL 797
+ + +L+ Q++D N+ ++D + +T A SL +N+ L
Sbjct: 826 RLTKQKEELELKEQKEDVLNNKLSDALAMVEETQKTKATESLKAESLALKLNETL 880
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 35.4 bits (80), Expect = 0.42
Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 40/231 (17%)
Query: 669 RSSHSLDYDKDRVKELINLIQCRKKSVGGDSDTEDMRSKTVLKR------KLEDLPENMR 722
+S ++ + +R++ ++ ++ K+ + G + + K K+ ++E++ E MR
Sbjct: 1620 QSYENVSNEAERIQHVVEAVRQEKQELYGKLRSTEANKKETEKQLQEAEQEMEEMKEKMR 1679
Query: 723 KLAKTSNLSENCHLYEESPQPIGSLGHDADLRRQQQDTCNSGIADIHRLFNWLSETLANA 782
K AK+ Q I L + D R A++H + E +
Sbjct: 1680 KFAKSKQ------------QKILELEEENDRLR----------AEVHPAGDTAKECMETL 1717
Query: 783 RHSDASLTDTVNKALGLSTDDAYEELRQKHEYELNSTPDKKDYEQPTCAKVENAQFKGTQ 842
S+AS+ + + + YE L +K + S +KD +++ Q +G
Sbjct: 1718 LSSNASMKEELERV-----KMEYETLSKKFQ----SLMSEKDSLSEEVQDLKH-QIEGNV 1767
Query: 843 SLLLEVDATSKYSVAISTSEVGTDHKLHLKEDPNLISVNNFEDCSLCPSVP 893
S ++AT K+ + +E GT E+ + +S++ CS SVP
Sbjct: 1768 SKQANLEATEKHDNQTNVTEEGTQSIPGETEEQDSLSMSTRPTCS--ESVP 1816
>gi|169203012 PREDICTED: similar to hCG1820409 [Homo sapiens]
Length = 339
Score = 34.7 bits (78), Expect = 0.72
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 24/91 (26%)
Query: 11 QPTDASWESGGGGDDEMKQALP------ELESSQQNGGGGGLNIAEPSGGAGREENAGAE 64
+P ++ GGGG+DE K P L GG G + +GG GR+ AG
Sbjct: 72 EPNFSAARRGGGGEDEEKAQQPTALILGSLPPRLPRRGGRG----DSAGGGGRDREAG-- 125
Query: 65 AAQSLSHEQPQDSSEAGAAALPRGPEEPERP 95
EA A R PE P +P
Sbjct: 126 ------------RGEANPAHSARSPERPRKP 144
>gi|113423021 PREDICTED: similar to hCG1820409 [Homo sapiens]
Length = 578
Score = 34.7 bits (78), Expect = 0.72
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 24/91 (26%)
Query: 11 QPTDASWESGGGGDDEMKQALP------ELESSQQNGGGGGLNIAEPSGGAGREENAGAE 64
+P ++ GGGG+DE K P L GG G + +GG GR+ AG
Sbjct: 72 EPNFSAARRGGGGEDEEKAQQPTALILGSLPPRLPRRGGRG----DSAGGGGRDREAG-- 125
Query: 65 AAQSLSHEQPQDSSEAGAAALPRGPEEPERP 95
EA A R PE P +P
Sbjct: 126 ------------RGEANPAHSARSPERPRKP 144
>gi|113422497 PREDICTED: similar to hCG1820409 [Homo sapiens]
Length = 578
Score = 34.7 bits (78), Expect = 0.72
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 24/91 (26%)
Query: 11 QPTDASWESGGGGDDEMKQALP------ELESSQQNGGGGGLNIAEPSGGAGREENAGAE 64
+P ++ GGGG+DE K P L GG G + +GG GR+ AG
Sbjct: 72 EPNFSAARRGGGGEDEEKAQQPTALILGSLPPRLPRRGGRG----DSAGGGGRDREAG-- 125
Query: 65 AAQSLSHEQPQDSSEAGAAALPRGPEEPERP 95
EA A R PE P +P
Sbjct: 126 ------------RGEANPAHSARSPERPRKP 144
>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
Length = 2649
Score = 34.7 bits (78), Expect = 0.72
Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 39/171 (22%)
Query: 591 APRNKSHIDTCLHAYIFRPEVYQLPICK-----LKELFEE---------------NRKLQ 630
A +N H+++ +H++ E+ +L IC+ LKE FE+ N K+Q
Sbjct: 1497 AEKNIQHLNSQIHSFRDEKELERLQICQRKSDHLKEQFEKSHEQLLQNIKAEKENNDKIQ 1556
Query: 631 QFSPLSDYEGQEEEMNGTKMKFGKRNNSRGEAIISGKQRSSHSLDYDKDRVKELINLIQC 690
+ + + + EM K++ R N+ + ++ Q S ++ +K +++ +C
Sbjct: 1557 RLNEELEKSNECAEMLKQKVEELTRQNNETKLMMQRIQAESENIVLEKQTIQQ-----RC 1611
Query: 691 RKKSVGGDSDTEDMRS-----------KTVLKRKLEDLPENMRKLAKTSNL 730
+ D + +RS + +RK++ L E+ LAK+ NL
Sbjct: 1612 EALKIQADGFKDQLRSTNEHLHKQTKTEQDFQRKIKCLEED---LAKSQNL 1659
>gi|30794488 kinesin family member 27 [Homo sapiens]
Length = 1401
Score = 34.7 bits (78), Expect = 0.72
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 28/190 (14%)
Query: 1336 LNPEVVTVENLKNFLTFLEE--------LSTPEGKWQWKVHCKFQKKLKELGRLNAKALS 1387
L+ EV V N + L LE +S E Q K H + KKL+ LN +L
Sbjct: 928 LDEEVEKVLNQRQELEELEADLKKREAIVSKKEALLQEKSHLE-NKKLRSSQALNTDSLK 986
Query: 1388 LLTLLNVYQKKHLVEILSYHNCDSQTRNAPE-------LDCLIRLQAQNIQQRHIVFLTE 1440
+ T LN+ +++ LS N QT A E ++ L + + Q ++RH V
Sbjct: 987 ISTRLNLLEQE-----LSEKNVQLQTSTAEEKTKISEQVEVLQKEKDQLQKRRHNVDEKL 1041
Query: 1441 KNIKMLSSYTDNGIVVATAEDFMQNFKNLVGYHNSITEENLPQLGANENLESQSDA---- 1496
KN ++LS ++ V+ E+ ++ + + Y N + L A+ + S+ +A
Sbjct: 1042 KNGRVLSPEEEH--VLFQLEEGIEALEAAIEYRNESIQNRQKSLRASFHNLSRGEANVLE 1099
Query: 1497 -VLTLTPLEL 1505
+ L+P+E+
Sbjct: 1100 KLACLSPVEI 1109
>gi|239754599 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 34.3 bits (77), Expect = 0.94
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 18 ESGGGGDDEMKQALPELESSQQNGGGGGLNIAEPSGGAGREENAGAEAAQSLSHEQPQDS 77
+S GGG + ++ ++ GGGG + AG++ A AE ++ ++P+
Sbjct: 136 QSRGGGSRKPRRQKAAAAQAKSLGGGGKKPRRQKCAAAGQK--AAAEESRRGGGKKPR-- 191
Query: 78 SEAGAAALPRGPEEPERPVRRSFQIPRKSREKKA 111
G A+ G ++P++ + PR+ R+K A
Sbjct: 192 -RGGQKAVGAGAKKPQKAAAAGTKTPRRRRQKAA 224
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 34.3 bits (77), Expect = 0.94
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 17/133 (12%)
Query: 705 RSKTVLKRKLEDLPENMRKLAKTSNLSENCHLYEESPQPIGSLGHDADLRRQQQDTCNSG 764
+SK L ++LE+L M + K N + + S HD DL R+Q +
Sbjct: 1307 KSKQALTQQLEELKRQMEEETKAKNAMAHA---------LQSSRHDCDLLREQYEEEQEA 1357
Query: 765 IADIHRLFNWLSETLANARHSDASLTDTVNKALGLSTDDAYEELRQKHEYELNSTPDKKD 824
A++ R + + +A R TD + + + EE ++K L + +
Sbjct: 1358 KAELQRALSKANSEVAQWRTKYE--TDAIQRT------EELEEAKKKLAQRLQEAEENTE 1409
Query: 825 YEQPTCAKVENAQ 837
CA +E +
Sbjct: 1410 TANSKCASLEKTK 1422
>gi|15721939 metastatic lymph node 51 [Homo sapiens]
Length = 703
Score = 34.3 bits (77), Expect = 0.94
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 19 SGGGGDDEMKQALPELESSQQNGGGGGLNIAEPSGGAGR--------EENAGAEAAQSLS 70
S GG E + +E+ Q+GG G + R + + A+A S
Sbjct: 314 SRSGGFKEGRAGFRPVEAGGQHGGRSGETVKHEISYRSRRLEQTSVRDPSPEADAPVLGS 373
Query: 71 HEQPQDSSEAGAAALPRGPEEPERPV-RRSFQIPRKSREK 109
E+ + +SE AAA P P+RP+ ++S+ R++R K
Sbjct: 374 PEKEEAASEPPAAAPDAAPPPPDRPIEKKSYSRARRTRTK 413
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 33.9 bits (76), Expect = 1.2
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 731 SENCHLYEESPQPIGSLGHDADLRRQQQDTCNSG--IADIHRLFNWLSETLANARHSDAS 788
+E+ +L E P I ++ D+DLR ++ CN+G I ++H+ S+ +A ++ S
Sbjct: 793 TESVNLKESKPL-ILNVTEDSDLRESEELECNTGSNITNMHQ-DKETSDAFHSATYTTIS 850
Query: 789 -LTDTVNKALGLSTDDAYEELRQKHE-YELNSTPDKKDYEQPTCAKVENAQFKGTQSLLL 846
L DT ++ + D +R H + PD+K+ + ++ FK Q
Sbjct: 851 QLPDTETHSISKAKADTLRIIRLSHSASKQEKLPDEKETQNAEYID-KSCTFKKPQ---- 905
Query: 847 EVDATSKYSVAISTSEVGTDHKLHLKEDPNLI 878
+ D + A S G +HLK+ P +
Sbjct: 906 QCDRKEQEKEANSELTQGFRFSIHLKQKPKYV 937
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 33.9 bits (76), Expect = 1.2
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 4 AVETEACQPTDASWESGGGGDDEMKQALPEL--ESSQQNGGGGGLNIAEPSGGAGREENA 61
A++ AC +S + G DD + L L E ++ GG G + G G EE
Sbjct: 1196 ALDVMACVDCGSSTQDPGHPDDPLFSELDGLGLEPMEEGGGEQGSSGGGSGEGEGCEEAQ 1255
Query: 62 G---AEAAQSLSHEQPQDSSEAGAAALP 86
G A ++Q L+ E+ ++ + + ALP
Sbjct: 1256 GGAKASSSQDLAMEEEEEGRSSSSPALP 1283
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 33.9 bits (76), Expect = 1.2
Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 20/165 (12%)
Query: 705 RSKTVLKRKLEDLPENMRKLAKTSNLSENCHLYEESPQPIGSLGHDADLRRQQQDTCNSG 764
R K ++LEDL + + K N + + S HD DL R+Q +
Sbjct: 1303 RGKLTYTQQLEDLKRQLEEEVKAKNALAHA---------LQSARHDCDLLREQYEEETEA 1353
Query: 765 IADIHRLFNWLSETLANARHSDASLTDTVNKALGLSTDDAYEELRQKHEYELNSTPDKKD 824
A++ R+ + + +A R TD + + + EE ++K L + +
Sbjct: 1354 KAELQRVLSKANSEVAQWRTKYE--TDAIQRT------EELEEAKKKLAQRLQEAEEAVE 1405
Query: 825 YEQPTCAKVENAQFK---GTQSLLLEVDATSKYSVAISTSEVGTD 866
C+ +E + + + L+++V+ ++ + A+ + D
Sbjct: 1406 AVNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFD 1450
>gi|19923352 NK3 homeobox 1 [Homo sapiens]
Length = 234
Score = 33.9 bits (76), Expect = 1.2
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 17/111 (15%)
Query: 21 GGGDDEMKQALPELESSQQNGGGGGLNIAEPSGGAGREENAGAEAAQSLSHEQPQD---- 76
GG +Q PE E + GG A+ + A E A++L+ +P+
Sbjct: 43 GGRTSSQRQRDPEPEPEPEPEGGRSRAGAQ-NDQLSTGPRAAPEEAETLAETEPERHLGS 101
Query: 77 ---SSEAGAAALPRGPEEPERPVRRS---------FQIPRKSREKKALFQP 115
SE + ALPR P+ P++P +RS ++ RK +K L P
Sbjct: 102 YLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAP 152
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo
sapiens]
Length = 6929
Score = 33.9 bits (76), Expect = 1.2
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 731 SENCHLYEESPQPIGSLGHDADLRRQQQDTCNSG--IADIHRLFNWLSETLANARHSDAS 788
+E+ +L E P I ++ D+DLR ++ CN+G I ++H+ S+ +A ++ S
Sbjct: 722 TESVNLKESKPL-ILNVTEDSDLRESEELECNTGSNITNMHQ-DKETSDAFHSATYTTIS 779
Query: 789 -LTDTVNKALGLSTDDAYEELRQKHE-YELNSTPDKKDYEQPTCAKVENAQFKGTQSLLL 846
L DT ++ + D +R H + PD+K+ + ++ FK Q
Sbjct: 780 QLPDTETHSISKAKADTLRIIRLSHSASKQEKLPDEKETQNAEYID-KSCTFKKPQ---- 834
Query: 847 EVDATSKYSVAISTSEVGTDHKLHLKEDPNLI 878
+ D + A S G +HLK+ P +
Sbjct: 835 QCDRKEQEKEANSELTQGFRFSIHLKQKPKYV 866
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,752,347
Number of Sequences: 37866
Number of extensions: 2789187
Number of successful extensions: 7701
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 7570
Number of HSP's gapped (non-prelim): 216
length of query: 1512
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1397
effective length of database: 13,892,928
effective search space: 19408420416
effective search space used: 19408420416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.