Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PDE7B Sequence: fasta or formatted (450aa) NCBI GI: 9506959
Description:

phosphodiesterase 7B

Referenced in:

Cyclic Nucleotides

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         25           4
 C cysteine            2.4         11           1
 D aspartate           5.3         24           1
 E glutamate           6.4         29           2
 F phenylalanine       4.4         20           1
 G glycine             5.8         26           1
 H histidine           6.2         28           2
 I isoleucine          4.9         22           2
 K lysine              4.2         19           3
 L leucine            13.1         59           2
 M methionine          3.6         16           1
 N asparagine          4.7         21           1
 P proline             3.8         17           1
 Q glutamine           5.8         26           2
 R arginine            6.2         28           2
 S serine              6.4         29           2
 T threonine           4.0         18           2
 V valine              3.6         16           1
 W tryptophan          1.3          6           1
 Y tyrosine            2.2         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 7B 
PDE7A                 0.579   phosphodiesterase 7A isoform a 
PDE7A                 0.524   phosphodiesterase 7A isoform b 
PDE4D                 0.224   phosphodiesterase 4D isoform 1 
PDE4D                 0.224   phosphodiesterase 4D isoform 2 
PDE4B                 0.211   phosphodiesterase 4B isoform 1 
PDE4B                 0.211   phosphodiesterase 4B isoform 3 
PDE4B                 0.211   phosphodiesterase 4B isoform 2 
PDE4B                 0.211   phosphodiesterase 4B isoform 1 
PDE4A                 0.211   phosphodiesterase 4A isoform 3 
PDE4A                 0.211   phosphodiesterase 4A isoform 2 
PDE4A                 0.211   phosphodiesterase 4A isoform 1 
PDE4A                 0.211   phosphodiesterase 4A isoform 4 
PDE4C                 0.207   phosphodiesterase 4C isoform PDE4C-2 
PDE4C                 0.207   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.207   phosphodiesterase 4C isoform PDE4C-1 
PDE1A                 0.168   phosphodiesterase 1A isoform 2 
PDE1A                 0.168   phosphodiesterase 1A isoform 1 
PDE1B                 0.164   phosphodiesterase 1B 
PDE1C                 0.161   phosphodiesterase 1C 
PDE8A                 0.152   phosphodiesterase 8A isoform 2 
PDE8A                 0.152   phosphodiesterase 8A isoform 1 
PDE8B                 0.152   phosphodiesterase 8B isoform 2 
PDE8B                 0.152   phosphodiesterase 8B isoform 4 
PDE8B                 0.152   phosphodiesterase 8B isoform 5 
PDE8B                 0.152   phosphodiesterase 8B isoform 3 
PDE8B                 0.152   phosphodiesterase 8B isoform 1 
PDE9A                 0.138   phosphodiesterase 9A isoform g 
PDE9A                 0.138   phosphodiesterase 9A isoform g 
PDE9A                 0.138   phosphodiesterase 9A isoform o 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press