Guide to the Human Genome
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Name: PDE1A Sequence: fasta or formatted (545aa) NCBI GI: 21361262
Description:

phosphodiesterase 1A isoform 1

Referenced in:

Calmodulin and Calcium
Cyclic Nucleotides

Other entries for this name:
alt prot [535aa] phosphodiesterase 1A isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         40           3
 C cysteine            0.6          3           1
 D aspartate           6.2         34           2
 E glutamate           8.4         46           3
 F phenylalanine       3.7         20           2
 G glycine             3.7         20           1
 H histidine           3.9         21           2
 I isoleucine          6.8         37           2
 K lysine              6.4         35           3
 L leucine             9.7         53           2
 M methionine          3.5         19           1
 N asparagine          4.0         22           2
 P proline             2.4         13           1
 Q glutamine           3.3         18           2
 R arginine            4.4         24           2
 S serine              8.1         44           3
 T threonine           6.4         35           2
 V valine              6.2         34           2
 W tryptophan          1.5          8           1
 Y tyrosine            3.5         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 1A isoform 1 
PDE1A                 0.953   phosphodiesterase 1A isoform 2 
PDE1C                 0.675   phosphodiesterase 1C 
PDE1B                 0.560   phosphodiesterase 1B 
PDE4D                 0.210   phosphodiesterase 4D isoform 1 
PDE4D                 0.210   phosphodiesterase 4D isoform 2 
PDE4A                 0.200   phosphodiesterase 4A isoform 3 
PDE4A                 0.200   phosphodiesterase 4A isoform 2 
PDE4A                 0.200   phosphodiesterase 4A isoform 1 
PDE4A                 0.200   phosphodiesterase 4A isoform 4 
PDE4B                 0.198   phosphodiesterase 4B isoform 1 
PDE4B                 0.198   phosphodiesterase 4B isoform 3 
PDE4B                 0.198   phosphodiesterase 4B isoform 2 
PDE4B                 0.198   phosphodiesterase 4B isoform 1 
PDE4C                 0.198   phosphodiesterase 4C isoform PDE4C-2 
PDE4C                 0.198   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.198   phosphodiesterase 4C isoform PDE4C-1 
PDE3A                 0.153   phosphodiesterase 3A 
PDE3B                 0.149   phosphodiesterase 3B 
PDE7B                 0.144   phosphodiesterase 7B 
PDE8A                 0.140   phosphodiesterase 8A isoform 2 
PDE8A                 0.140   phosphodiesterase 8A isoform 1 
PDE7A                 0.138   phosphodiesterase 7A isoform a 
PDE8B                 0.131   phosphodiesterase 8B isoform 2 
PDE8B                 0.131   phosphodiesterase 8B isoform 4 
PDE8B                 0.131   phosphodiesterase 8B isoform 5 
PDE8B                 0.131   phosphodiesterase 8B isoform 3 
PDE8B                 0.131   phosphodiesterase 8B isoform 1 
PDE7A                 0.126   phosphodiesterase 7A isoform b 
PDE9A                 0.116   phosphodiesterase 9A isoform g 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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