Guide to the Human Genome
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Name: PDE8B Sequence: fasta or formatted (788aa) NCBI GI: 71164867
Description:

phosphodiesterase 8B isoform 3

Referenced in:

Cyclic Nucleotides

Other entries for this name:
alt prot [885aa] phosphodiesterase 8B isoform 1
alt prot [830aa] phosphodiesterase 8B isoform 5
alt prot [865aa] phosphodiesterase 8B isoform 4
alt prot [838aa] phosphodiesterase 8B isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         71           2
 C cysteine            3.0         24           2
 D aspartate           6.3         50           2
 E glutamate           6.3         50           2
 F phenylalanine       3.9         31           2
 G glycine             3.9         31           2
 H histidine           4.4         35           2
 I isoleucine          6.6         52           2
 K lysine              3.8         30           1
 L leucine             7.4         58           2
 M methionine          1.9         15           2
 N asparagine          4.7         37           1
 P proline             4.7         37           2
 Q glutamine           3.7         29           1
 R arginine            6.3         50           3
 S serine              9.1         72           3
 T threonine           5.7         45           2
 V valine              6.1         48           2
 W tryptophan          0.9          7           2
 Y tyrosine            2.0         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 8B isoform 3 
PDE8B                 0.985   phosphodiesterase 8B isoform 2 
PDE8B                 0.629   phosphodiesterase 8B isoform 4 
PDE8B                 0.629   phosphodiesterase 8B isoform 1 
PDE8A                 0.587   phosphodiesterase 8A isoform 2 
PDE8B                 0.479   phosphodiesterase 8B isoform 5 
PDE8A                 0.452   phosphodiesterase 8A isoform 1 
PDE4B                 0.122   phosphodiesterase 4B isoform 1 
PDE4B                 0.122   phosphodiesterase 4B isoform 3 
PDE4B                 0.122   phosphodiesterase 4B isoform 2 
PDE4B                 0.122   phosphodiesterase 4B isoform 1 
PDE4A                 0.118   phosphodiesterase 4A isoform 3 
PDE4A                 0.118   phosphodiesterase 4A isoform 2 
PDE4A                 0.118   phosphodiesterase 4A isoform 1 
PDE4A                 0.118   phosphodiesterase 4A isoform 4 
PDE4C                 0.117   phosphodiesterase 4C isoform PDE4C-2 
PDE4C                 0.117   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.117   phosphodiesterase 4C isoform PDE4C-1 
PDE4D                 0.116   phosphodiesterase 4D isoform 1 
PDE4D                 0.116   phosphodiesterase 4D isoform 2 
PDE7A                 0.098   phosphodiesterase 7A isoform a 
PDE1C                 0.092   phosphodiesterase 1C 
PDE9A                 0.088   phosphodiesterase 9A isoform g 
PDE1A                 0.088   phosphodiesterase 1A isoform 2 
PDE1A                 0.088   phosphodiesterase 1A isoform 1 
PDE9A                 0.088   phosphodiesterase 9A isoform g 
PDE9A                 0.088   phosphodiesterase 9A isoform o 
PDE9A                 0.088   phosphodiesterase 9A isoform n 
PDE9A                 0.088   phosphodiesterase 9A isoform m 
PDE9A                 0.088   phosphodiesterase 9A isoform j 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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