Guide to the Human Genome
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Name: PDE4B Sequence: fasta or formatted (564aa) NCBI GI: 82799482
Description:

phosphodiesterase 4B isoform 2

Referenced in:

Cyclic Nucleotides

Other entries for this name:
alt prot [736aa] phosphodiesterase 4B isoform 1
alt prot [721aa] phosphodiesterase 4B isoform 3
alt prot [736aa] phosphodiesterase 4B isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         27           3
 C cysteine            1.4          8           1
 D aspartate           8.0         45           1
 E glutamate           8.3         47           2
 F phenylalanine       3.5         20           2
 G glycine             3.9         22           2
 H histidine           3.5         20           2
 I isoleucine          4.8         27           1
 K lysine              5.5         31           4
 L leucine            10.5         59           3
 M methionine          4.4         25           2
 N asparagine          5.0         28           2
 P proline             3.4         19           2
 Q glutamine           5.1         29           2
 R arginine            3.5         20           1
 S serine              8.9         50           3
 T threonine           6.7         38           1
 V valine              5.0         28           1
 W tryptophan          1.1          6           1
 Y tyrosine            2.7         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphodiesterase 4B isoform 2 
PDE4B                 0.928   phosphodiesterase 4B isoform 1 
PDE4B                 0.928   phosphodiesterase 4B isoform 3 
PDE4B                 0.928   phosphodiesterase 4B isoform 1 
PDE4D                 0.722   phosphodiesterase 4D isoform 1 
PDE4D                 0.722   phosphodiesterase 4D isoform 2 
PDE4A                 0.697   phosphodiesterase 4A isoform 3 
PDE4A                 0.697   phosphodiesterase 4A isoform 2 
PDE4A                 0.697   phosphodiesterase 4A isoform 1 
PDE4A                 0.639   phosphodiesterase 4A isoform 4 
PDE4C                 0.638   phosphodiesterase 4C isoform PDE4C-2 
PDE4C                 0.638   phosphodiesterase 4C isoform PDE4C-3 
PDE4C                 0.638   phosphodiesterase 4C isoform PDE4C-1 
PDE1A                 0.189   phosphodiesterase 1A isoform 2 
PDE1A                 0.189   phosphodiesterase 1A isoform 1 
PDE1B                 0.187   phosphodiesterase 1B 
PDE1C                 0.185   phosphodiesterase 1C 
PDE8A                 0.181   phosphodiesterase 8A isoform 2 
PDE8A                 0.181   phosphodiesterase 8A isoform 1 
PDE8B                 0.173   phosphodiesterase 8B isoform 2 
PDE8B                 0.173   phosphodiesterase 8B isoform 4 
PDE8B                 0.173   phosphodiesterase 8B isoform 5 
PDE8B                 0.173   phosphodiesterase 8B isoform 3 
PDE8B                 0.173   phosphodiesterase 8B isoform 1 
PDE7B                 0.172   phosphodiesterase 7B 
PDE7A                 0.165   phosphodiesterase 7A isoform a 
PDE7A                 0.151   phosphodiesterase 7A isoform b 
PDE3B                 0.140   phosphodiesterase 3B 
PDE9A                 0.138   phosphodiesterase 9A isoform f 
PDE9A                 0.138   phosphodiesterase 9A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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