Guide to the Human Genome
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Name: ZNF187 Sequence: fasta or formatted (344aa) NCBI GI: 161353477
Description:

zinc finger protein 187 isoform c

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [479aa] zinc finger protein 187 isoform a
alt prot [478aa] zinc finger protein 187 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         14           1
 C cysteine            5.8         20           1
 D aspartate           2.0          7           1
 E glutamate          10.8         37           2
 F phenylalanine       2.9         10           1
 G glycine             5.8         20           1
 H histidine           9.3         32           2
 I isoleucine          4.7         16           1
 K lysine              9.9         34           2
 L leucine             7.6         26           3
 M methionine          0.9          3           1
 N asparagine          3.2         11           1
 P proline             3.2         11           1
 Q glutamine           7.3         25           2
 R arginine            6.4         22           2
 S serine              7.8         27           3
 T threonine           3.5         12           1
 V valine              3.5         12           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 187 isoform c 
ZNF187                0.989   zinc finger protein 187 isoform a 
ZNF187                0.987   zinc finger protein 187 isoform b 
ZNF192                0.399   zinc finger protein 192 
ZNF79                 0.385   zinc finger protein 79 
ZNF135                0.384   zinc finger protein 135 
ZNF167                0.381   zinc finger protein 167 isoform 1 
ZNF16                 0.381   zinc finger protein 16 
ZNF16                 0.381   zinc finger protein 16 
ZNF681                0.379   zinc finger protein 681 
ZNF420                0.376   zinc finger protein 420 
ZNF83                 0.376   zinc finger protein 83 isoform a 
ZNF83                 0.376   zinc finger protein 83 isoform a 
ZNF83                 0.376   zinc finger protein 83 isoform a 
ZNF83                 0.376   zinc finger protein 83 isoform a 
ZNF83                 0.376   zinc finger protein 83 isoform a 
ZNF678                0.375   zinc finger protein 678 
ZNF852                0.374   PREDICTED: zinc finger protein 852 
ZNF852                0.374   PREDICTED: zinc finger protein 852 
ZNF397                0.374   zinc finger protein 397 isoform 1 
ZNF184                0.372   zinc finger protein 184 
ZNF502                0.372   zinc finger protein 502 
ZNF502                0.372   zinc finger protein 502 
ZNF502                0.372   zinc finger protein 502 
ZNF502                0.372   zinc finger protein 502 
LOC647678             0.371   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC647678             0.371   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.371   PREDICTED: hypothetical protein XP_002343697 
ZNF570                0.369   zinc finger protein 570 
ZNF677                0.369   zinc finger protein 677 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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