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Search of human proteins with 15812188
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15812188 F-box only protein 3 isoform 2 [Homo sapiens]
(415 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15812188 F-box only protein 3 isoform 2 [Homo sapiens] 863 0.0
gi|15812186 F-box only protein 3 isoform 1 [Homo sapiens] 860 0.0
gi|7661672 DNA polymerase delta interacting protein 2 [Homo sapi... 60 5e-09
gi|111185922 F-box protein 36 [Homo sapiens] 39 0.009
gi|118402584 F-box and WD repeat domain containing 2 [Homo sapiens] 38 0.015
gi|11545739 F-box and WD repeat domain containing 4 [Homo sapiens] 37 0.043
gi|27312027 F-box only protein 16 [Homo sapiens] 37 0.043
gi|15812198 F-box only protein 2 [Homo sapiens] 35 0.096
gi|16306574 F-box and leucine-rich repeat protein 5 isoform 2 [H... 35 0.13
gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [H... 35 0.13
gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [H... 35 0.13
gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [H... 35 0.13
gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens] 34 0.21
gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens] 34 0.21
gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens] 34 0.21
gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [H... 34 0.28
gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [H... 34 0.28
gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [H... 34 0.28
gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens] 33 0.48
gi|11024696 F-box only protein 24 isoform 2 [Homo sapiens] 33 0.48
gi|48928044 F-box only protein 8 [Homo sapiens] 32 1.1
gi|118150678 epithelial cell transforming sequence 2 oncogene-li... 32 1.4
gi|27734755 F-box and leucine-rich repeat protein 20 [Homo sapiens] 31 1.8
gi|62988344 P antigen family, member 3 (prostate associated) [Ho... 31 2.4
gi|154816198 transcription elongation factor B polypeptide 3C-li... 30 3.1
gi|156938279 transcription elongation factor B polypeptide 3C [H... 30 3.1
gi|229576894 F-box and WD repeat domain containing 12 isoform 2 ... 30 4.0
gi|229576873 F-box and WD repeat domain containing 12 isoform 1 ... 30 4.0
gi|83035136 F-box protein 31 [Homo sapiens] 30 5.3
gi|219281831 F-box protein 15 isoform 2 [Homo sapiens] 30 5.3
>gi|15812188 F-box only protein 3 isoform 2 [Homo sapiens]
Length = 415
Score = 863 bits (2229), Expect = 0.0
Identities = 415/415 (100%), Positives = 415/415 (100%)
Query: 1 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY 60
MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
Sbjct: 1 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY 60
Query: 61 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE 120
WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
Sbjct: 61 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE 120
Query: 121 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA 180
GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
Sbjct: 121 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA 180
Query: 181 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI 240
AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
Sbjct: 181 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI 240
Query: 241 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH 300
IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
Sbjct: 241 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH 300
Query: 301 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV 360
PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
Sbjct: 301 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV 360
Query: 361 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLVS 415
YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLVS
Sbjct: 361 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARLVS 415
>gi|15812186 F-box only protein 3 isoform 1 [Homo sapiens]
Length = 471
Score = 860 bits (2221), Expect = 0.0
Identities = 413/413 (100%), Positives = 413/413 (100%)
Query: 1 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY 60
MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY
Sbjct: 1 MAAMETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY 60
Query: 61 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE 120
WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE
Sbjct: 61 WLISEEEKTQKNQCWKSLFIDTYSDVGRYIDHYAAIKKAWDDLKKYLEPRCPRMVLSLKE 120
Query: 121 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA 180
GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA
Sbjct: 121 GAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQKLVVPGLLGSMALSNHYRSEDLLDVDTA 180
Query: 181 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI 240
AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI
Sbjct: 181 AGGFQQRQGLKYCLPLTFCIHTGLSQYIAVEAAEGRNKNEVFYQCPDQMARNPAAIDMFI 240
Query: 241 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH 300
IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH
Sbjct: 241 IGATFTDWFTSYVKNVVSGGFPIIRDQIFRYVHDPECVATTGDITVSVSTSFLPELSSVH 300
Query: 301 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV 360
PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV
Sbjct: 301 PPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEFPIISPGRV 360
Query: 361 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARL 413
YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARL
Sbjct: 361 YEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPRFHMACPTFRVSIARL 413
>gi|7661672 DNA polymerase delta interacting protein 2 [Homo
sapiens]
Length = 368
Score = 59.7 bits (143), Expect = 5e-09
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 280 TTGDITVSVSTSFLPELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGD 339
TT +I V+V ++ + + Y++ Y IR+E L QL R+WRI + G
Sbjct: 237 TTENIRVTVIPFYMGMREAQNSHVYWWRYCIRLEN----LDSDVVQLRERHWRIFSLSGT 292
Query: 340 VEEVQGPGVVGEFPIISPGR-VYEYTSCTTFSTTSGYMEGYYTFHFLYFKDKIFNVAIPR 398
+E V+G GVVG P++S + ++Y+S + +SG+M G TF F F+V IP
Sbjct: 293 LETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWG--TFRFERPDGSHFDVRIPP 350
Query: 399 FHM 401
F +
Sbjct: 351 FSL 353
>gi|111185922 F-box protein 36 [Homo sapiens]
Length = 188
Score = 38.9 bits (89), Expect = 0.009
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 13 LESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRR 55
LE L D LL I+S+LD D+ C S R ++L D LW +
Sbjct: 94 LERLSDDLLLTIISYLDLEDIARLCQTSHRFAKLCMSDKLWEQ 136
>gi|118402584 F-box and WD repeat domain containing 2 [Homo sapiens]
Length = 454
Score = 38.1 bits (87), Expect = 0.015
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 13 LESLPTDPLLLILSFLDYRDLINCCYVSRRLSQ-LSSHDPLWRRHCKKY-WLISEEEKTQ 70
L+ LP + +L +LD + L+ CC VS++ ++ +S+ +W+ CK W I ++ Q
Sbjct: 57 LKLLPLELSFYLLKWLDPQTLLTCCLVSKQWNKVISACTEVWQTACKNLGWQI--DDSVQ 114
Query: 71 KNQCWKSLFIDTYSDVGRYIDHYA 94
WK +++ + + DH A
Sbjct: 115 DALHWKKVYLKAILRMKQLEDHEA 138
>gi|11545739 F-box and WD repeat domain containing 4 [Homo
sapiens]
Length = 412
Score = 36.6 bits (83), Expect = 0.043
Identities = 25/57 (43%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 2 AAMETETAPLT---LESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRR 55
AA E+ P L LP + LLLI S+LD R L V R L + +S D LWRR
Sbjct: 14 AARESAARPAAGPALWRLPEELLLLICSYLDMRALGRLAQVCRWLRRFTSCDLLWRR 70
>gi|27312027 F-box only protein 16 [Homo sapiens]
Length = 292
Score = 36.6 bits (83), Expect = 0.043
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 16 LPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY-WLISEEEKTQKNQC 74
LP L I SFLD R L C V L+ D LW C ++ W I+ +
Sbjct: 92 LPRVLSLYIFSFLDPRSLCRCAQVCWHWKNLAELDQLWMLKCLRFNWYINFSPTPFEQGI 151
Query: 75 WKSLFIDTYSDV 86
WK +I ++
Sbjct: 152 WKKHYIQMVKEL 163
>gi|15812198 F-box only protein 2 [Homo sapiens]
Length = 296
Score = 35.4 bits (80), Expect = 0.096
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 5 ETETAPLTLESLPTDPLLLILSFLDYRDLINCC-YVSRRLSQLSSHDPLWRRHCKKYWLI 63
E A L+ LP LL +L+ L +L+ C V R +L PLW C++ L+
Sbjct: 39 EAAAAAAYLDELPEPLLLRVLAALPAAELVQACRLVCLRWKELVDGAPLWLLKCQQEGLV 98
Query: 64 SEEEKTQKNQCWKSLF 79
E ++ W+ +
Sbjct: 99 PEGGVEEERDHWQQFY 114
>gi|16306574 F-box and leucine-rich repeat protein 5 isoform 2 [Homo
sapiens]
Length = 565
Score = 35.0 bits (79), Expect = 0.13
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 16 LPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKYW 61
LP + +L I S+L+ ++L C VS + SQL+ LW+ +W
Sbjct: 82 LPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTKTGSLWKHLYPVHW 127
>gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [Homo
sapiens]
Length = 691
Score = 35.0 bits (79), Expect = 0.13
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 16 LPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKYW 61
LP + +L I S+L+ ++L C VS + SQL+ LW+ +W
Sbjct: 208 LPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTKTGSLWKHLYPVHW 253
>gi|30795121 F-box and WD repeat domain containing 8 isoform 2 [Homo
sapiens]
Length = 532
Score = 35.0 bits (79), Expect = 0.13
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 5 ETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKYWLIS 64
E P LP + + I +LD ++L C VS+ ++ + LW R C++ +
Sbjct: 42 EMNDVPFFDIQLPYELAINIFQYLDRKELGRCAQVSKTWKVIAEDEVLWYRLCQQEGHLP 101
Query: 65 EEEKTQKNQCWKSLF 79
+ + + CWK +F
Sbjct: 102 DSSISDYS-CWKLIF 115
>gi|30795123 F-box and WD repeat domain containing 8 isoform 1 [Homo
sapiens]
Length = 598
Score = 35.0 bits (79), Expect = 0.13
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 5 ETETAPLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKYWLIS 64
E P LP + + I +LD ++L C VS+ ++ + LW R C++ +
Sbjct: 108 EMNDVPFFDIQLPYELAINIFQYLDRKELGRCAQVSKTWKVIAEDEVLWYRLCQQEGHLP 167
Query: 65 EEEKTQKNQCWKSLF 79
+ + + CWK +F
Sbjct: 168 DSSISDYS-CWKLIF 181
>gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]
Length = 843
Score = 34.3 bits (77), Expect = 0.21
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 14 ESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRR---------------HCK 58
E LP + +L I S+L +DL V +R S+L++ LW+R
Sbjct: 73 EKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPG 132
Query: 59 KYWLISEEEKTQKNQCWKSLFIDTY 83
K++ I+ EE N WK F Y
Sbjct: 133 KFYQINPEEYEHPNP-WKESFQQLY 156
>gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens]
Length = 686
Score = 34.3 bits (77), Expect = 0.21
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 14 ESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRR---------------HCK 58
E LP + +L I S+L +DL V +R S+L++ LW+R
Sbjct: 73 EKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPG 132
Query: 59 KYWLISEEEKTQKNQCWKSLFIDTY 83
K++ I+ EE N WK F Y
Sbjct: 133 KFYQINPEEYEHPNP-WKESFQQLY 156
>gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens]
Length = 585
Score = 34.3 bits (77), Expect = 0.21
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 14 ESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRR---------------HCK 58
E LP + +L I S+L +DL V +R S+L++ LW+R
Sbjct: 73 EKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPG 132
Query: 59 KYWLISEEEKTQKNQCWKSLFIDTY 83
K++ I+ EE N WK F Y
Sbjct: 133 KFYQINPEEYEHPNP-WKESFQQLY 156
>gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [Homo
sapiens]
Length = 589
Score = 33.9 bits (76), Expect = 0.28
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 16 LPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKK 59
LP + L +LSFL+ +DL+ R L+ + LWR CK+
Sbjct: 166 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE 209
>gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [Homo
sapiens]
Length = 707
Score = 33.9 bits (76), Expect = 0.28
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 16 LPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKK 59
LP + L +LSFL+ +DL+ R L+ + LWR CK+
Sbjct: 284 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE 327
>gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [Homo
sapiens]
Length = 627
Score = 33.9 bits (76), Expect = 0.28
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 16 LPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKK 59
LP + L +LSFL+ +DL+ R L+ + LWR CK+
Sbjct: 204 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE 247
>gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens]
Length = 580
Score = 33.1 bits (74), Expect = 0.48
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 10 PLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKK 59
P++++ P + + I+SFL RDL+ R ++ + +WRR C++
Sbjct: 36 PISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRR 85
>gi|11024696 F-box only protein 24 isoform 2 [Homo sapiens]
Length = 318
Score = 33.1 bits (74), Expect = 0.48
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 10 PLTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKK 59
P++++ P + + I+SFL RDL+ R ++ + +WRR C++
Sbjct: 36 PISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRR 85
>gi|48928044 F-box only protein 8 [Homo sapiens]
Length = 319
Score = 32.0 bits (71), Expect = 1.1
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 11 LTLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKYW 61
+ LE LP + ILS+L+ DL C S L++ + LW+ CK W
Sbjct: 69 INLEMLPPELSFTILSYLNATDL---CLASCVWQDLANDELLWQGLCKSTW 116
>gi|118150678 epithelial cell transforming sequence 2 oncogene-like
[Homo sapiens]
Length = 904
Score = 31.6 bits (70), Expect = 1.4
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 16 LPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKY-WLISEEEKTQKNQC 74
LP L I SFL +DL VS L+ D LW C K+ W + +
Sbjct: 81 LPRFISLYIFSFLSPKDLCAAAQVSWPWKFLTEQDCLWMPKCVKFGWFLPYTPTDNEYGA 140
Query: 75 WKSLFI 80
WK +I
Sbjct: 141 WKRHYI 146
>gi|27734755 F-box and leucine-rich repeat protein 20 [Homo
sapiens]
Length = 436
Score = 31.2 bits (69), Expect = 1.8
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 14 ESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRR 55
+ LP + LL I SFLD L C VSR + L+ W+R
Sbjct: 26 KKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQR 67
>gi|62988344 P antigen family, member 3 (prostate associated) [Homo
sapiens]
Length = 113
Score = 30.8 bits (68), Expect = 2.4
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 295 ELSSVHPPHYFFTYRIRIEMSKDALPEKACQLDSRYWRITNAKGDVEEVQGPGVVGEF-P 353
+L PP Y E + AL + L + W +T +K E GP V GEF P
Sbjct: 37 QLQQEEPPIESQDYTPGQERDEGALDFQVLGLAAYLWELTRSKTGGERGDGPNVKGEFLP 96
Query: 354 IISPGRVYE 362
+ P ++ E
Sbjct: 97 NLEPVKIPE 105
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 30.4 bits (67), Expect = 3.1
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 50 DPLWRRHCKKYWLISEEEKTQKNQCWKSLFI 80
D LWR HC + + +EEK Q+++ W+ L++
Sbjct: 390 DELWRIHCLQDF---KEEKPQEHESWRELYL 417
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 30.4 bits (67), Expect = 3.1
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 50 DPLWRRHCKKYWLISEEEKTQKNQCWKSLFI 80
D LWR HC + + +EEK Q+++ W+ L++
Sbjct: 390 DELWRIHCLQDF---KEEKPQEHESWRELYL 417
>gi|229576894 F-box and WD repeat domain containing 12 isoform 2
[Homo sapiens]
Length = 394
Score = 30.0 bits (66), Expect = 4.0
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 16 LPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKYWLISE-EEKTQKNQC 74
LP L I SFLD L+ V++ ++++ D LWR + W S +
Sbjct: 5 LPDLALKRIFSFLDLFGLLQVSQVNKHWNRIADSDYLWRSLSLQRWDCSNFTNQHLGTHT 64
Query: 75 WKSLFI 80
WK F+
Sbjct: 65 WKQFFL 70
>gi|229576873 F-box and WD repeat domain containing 12 isoform 1
[Homo sapiens]
Length = 464
Score = 30.0 bits (66), Expect = 4.0
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 16 LPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKYWLISE-EEKTQKNQC 74
LP L I SFLD L+ V++ ++++ D LWR + W S +
Sbjct: 5 LPDLALKRIFSFLDLFGLLQVSQVNKHWNRIADSDYLWRSLSLQRWDCSNFTNQHLGTHT 64
Query: 75 WKSLFI 80
WK F+
Sbjct: 65 WKQFFL 70
>gi|83035136 F-box protein 31 [Homo sapiens]
Length = 539
Score = 29.6 bits (65), Expect = 5.3
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 12 TLESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLWRRHCKKYWLISE 65
+L LP + L+ I + L DL + V + ++ D +WRR C++ + + E
Sbjct: 66 SLLELPPELLVEIFASLPGTDLPSLAQVCTKFRRILHTDTIWRRRCREEYGVCE 119
>gi|219281831 F-box protein 15 isoform 2 [Homo sapiens]
Length = 510
Score = 29.6 bits (65), Expect = 5.3
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 13 LESLPTDPLLLILSFLDYRDLINCCYVSRRLSQLSSHDPLW 53
L+ +P++ LL I S+LD L+ VSRR L++ + +W
Sbjct: 74 LDGMPSEILLKIFSYLDAVSLLCTGCVSRRFYHLANDNFIW 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,412,673
Number of Sequences: 37866
Number of extensions: 726749
Number of successful extensions: 1351
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1323
Number of HSP's gapped (non-prelim): 40
length of query: 415
length of database: 18,247,518
effective HSP length: 105
effective length of query: 310
effective length of database: 14,271,588
effective search space: 4424192280
effective search space used: 4424192280
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.