Search of human proteins with 15812180

Search of human proteins with 15812180

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15812180 butyrate response factor 1 [Homo sapiens]
         (338 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|15812180 butyrate response factor 1 [Homo sapiens]                 691   0.0  
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]    246   2e-65
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]   155   4e-38
gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo sapi...    45   9e-05
gi|73695473 roquin [Homo sapiens]                                      45   9e-05
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]         44   2e-04
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap...    44   3e-04
gi|156105697 ring finger and CCCH-type zinc finger domains 2 iso...    42   8e-04
gi|156105699 ring finger and CCCH-type zinc finger domains 2 iso...    42   8e-04
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]    41   0.001
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]    41   0.001
gi|193788659 cleavage and polyadenylation specific factor 4-like...    40   0.003
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         40   0.003
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]         38   0.011
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]         38   0.015
gi|125987603 cleavage and polyadenylation specific factor 4, 30k...    37   0.019
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa...    37   0.019
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap...    37   0.019
gi|169211258 PREDICTED: similar to hCG2036610 [Homo sapiens]           37   0.033
gi|169211651 PREDICTED: similar to protein phosphatase 1, regula...    37   0.033
gi|169210870 PREDICTED: similar to hCG2036610 [Homo sapiens]           37   0.033
gi|32880199 makorin ring finger protein 2 [Homo sapiens]               37   0.033
gi|54792138 helicase with zinc finger domain [Homo sapiens]            36   0.056
gi|12669915 E2F transcription factor 4 [Homo sapiens]                  36   0.056
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         36   0.056
gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens]          36   0.056
gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens]         35   0.073
gi|5902158 ring finger protein 113A [Homo sapiens]                     35   0.096
gi|30578416 ring finger protein 113B [Homo sapiens]                    35   0.096
gi|21389577 hypothetical protein LOC146705 [Homo sapiens]              35   0.12 

>gi|15812180 butyrate response factor 1 [Homo sapiens]
          Length = 338

 Score =  691 bits (1783), Expect = 0.0
 Identities = 338/338 (100%), Positives = 338/338 (100%)

Query: 1   MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSS 60
           MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSS
Sbjct: 1   MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSS 60

Query: 61  KFHQNQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELC 120
           KFHQNQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELC
Sbjct: 61  KFHQNQLLSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELC 120

Query: 121 RPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAE 180
           RPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAE
Sbjct: 121 RPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAE 180

Query: 181 ERRALAGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPILSADDLLGS 240
           ERRALAGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPILSADDLLGS
Sbjct: 181 ERRALAGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPILSADDLLGS 240

Query: 241 PTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLS 300
           PTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLS
Sbjct: 241 PTLPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLS 300

Query: 301 DQEGYLSSSSSSHSGSDSPTLDNSRRLPIFSRLSISDD 338
           DQEGYLSSSSSSHSGSDSPTLDNSRRLPIFSRLSISDD
Sbjct: 301 DQEGYLSSSSSSHSGSDSPTLDNSRRLPIFSRLSISDD 338


>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
          Length = 494

 Score =  246 bits (629), Expect = 2e-65
 Identities = 196/503 (38%), Positives = 229/503 (45%), Gaps = 174/503 (34%)

Query: 1   MTTTLVSATIFDLSEVLCKGNKMLNYSAPSAGGCLLDRKAVGTPAGG--------GFPRR 52
           M+TTL+SA  +D+ + LCK  K L   A      +LD+KAVGTP           GF RR
Sbjct: 1   MSTTLLSA-FYDV-DFLCKTEKSL---ANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRR 55

Query: 53  HSVTLPSSKFHQNQ------------------------------LLSSLKGEPAPALSSR 82
           HS +   +  H                                  L    G    AL ++
Sbjct: 56  HSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNK 115

Query: 83  DSRFRDRSFSEGGER------LLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQ 136
           +++FRDRSFSE G+R      L   QK  GG Q+NS+RYKTELCRPFEE+G CKYG+KCQ
Sbjct: 116 ENKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQ 175

Query: 137 FAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA---------- 186
           FAHG HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA+ERR             
Sbjct: 176 FAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRA 235

Query: 187 -GARDL------SADRPRLQHSFSFAGFPSA----AATAAATGLLDSPTSITPPP----- 230
            G RD          RP+L HS SF+GFPS          +  LLDSPTS TPPP     
Sbjct: 236 FGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSS 295

Query: 231 -----------------------------------------ILSADDLL--GSP----TL 243
                                                       A+DLL  G+P    + 
Sbjct: 296 ASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSS 355

Query: 244 PDGTNNPFAFSSQELASLFAP------------------------SMGLPGGGSPTTFLF 279
               NN FAF   EL+SL  P                          GL     P     
Sbjct: 356 ASCANNAFAF-GPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPA--- 411

Query: 280 RPMSESPHMFDSPPSPQDS------LSD----------------QEGYLSS--SSSSHSG 315
            P +  P    +PPSP  S      LSD                ++ YLS   SS S SG
Sbjct: 412 PPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSG 471

Query: 316 SDSPTLDNSRRLPIFSRLSISDD 338
           S+SP+LD  RRLPIFSRLSISDD
Sbjct: 472 SESPSLDPGRRLPIFSRLSISDD 494


>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
          Length = 326

 Score =  155 bits (393), Expect = 4e-38
 Identities = 104/266 (39%), Positives = 125/266 (46%), Gaps = 46/266 (17%)

Query: 95  GERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYK 154
           G  L P+   P       SRYKTELCR F E+G C+YG KCQFAHG+ ELR   RHPKYK
Sbjct: 84  GPELSPSPTSPTATSTTPSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYK 143

Query: 155 TELCRTFHTIGFCPYGPRCHFIHNAEERRALAGARDLSADRPRLQHSFSFAGFPSAAATA 214
           TELC  F+  G CPYG RCHFIHN  E  A  G        P L+ S SF+G PS   T+
Sbjct: 144 TELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPG------HPPVLRQSISFSGLPSGRRTS 197

Query: 215 ---------AATGLLDSPTSITPPP---ILSADDLLGSPTLPDGTNNPFAFSSQELASLF 262
                    + +    SP+S  PPP    LS      +P  P    +P            
Sbjct: 198 PPPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCRRAT 257

Query: 263 APSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLSDQEGYLSSSSSSHSGSDSPTLD 322
             S+  P GG   T                PS Q   SD + Y +SS SS  GSDSP  +
Sbjct: 258 PISVWGPLGGLVRT----------------PSVQSLGSDPDEY-ASSGSSLGGSDSPVFE 300

Query: 323 NS-----------RRLPIFSRLSISD 337
                        RRLPIF+R+S+S+
Sbjct: 301 AGVFAPPQPVAAPRRLPIFNRISVSE 326


>gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo
           sapiens]
          Length = 650

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 92  SEGGERLLPTQKQPGGGQ-----VNSSRY-KTELCRPFEENGA--CKYGDKCQFAHGIHE 143
           +E GE+L  TQK+  G       V  + Y K  LC    +  A  C +GD+C+F H +  
Sbjct: 91  AEPGEQL-QTQKRARGQNKGRPHVKPTNYDKNRLCPSLIQESAAKCFFGDRCRFLHDVG- 148

Query: 144 LRSLTRHPKYKTELCRTFHTIGFCPYGPRCHF 175
            R L   P      C  F T G CPYG  C F
Sbjct: 149 -RYLETKPADLGPRCVLFETFGRCPYGVTCRF 179


>gi|73695473 roquin [Homo sapiens]
          Length = 1133

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 52/169 (30%), Positives = 67/169 (39%), Gaps = 31/169 (18%)

Query: 149 RHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE-------RRALAGARDLSADRPRLQHS 201
           +H KYKT +CR     G CP G  C F H+ EE        + L   R LSA   +L   
Sbjct: 410 QHSKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNE- 468

Query: 202 FSFAGFPSAAATAAATGLLDSPTSITPPPILSADDLLGSPT---LPDGTNNPFAFSSQEL 258
               G PS AA     G +D P S  PP + +     G+     +P GT +P   SS + 
Sbjct: 469 ---VGLPS-AAILPDEGAVDLP-SRKPPALPNGIVSTGNTVTQLIPRGT-DPSYDSSLKP 522

Query: 259 ASLFAPSMGLPGGGSPTTFL------FRPMSESPHMF------DSPPSP 295
             +   S   P  GSP   L         +  +PH        D PP P
Sbjct: 523 GKIDHLSSSAP--GSPPDLLESVPKSISALPVNPHSIPPRGPADLPPMP 569



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 113 SRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPK 152
           S+YKT +CR  ++ G C  G  C FAH   EL    +  K
Sbjct: 412 SKYKTYMCRDMKQRGGCPRGASCTFAHSQEELEKFRKMNK 451


>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
          Length = 1303

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 65/272 (23%), Positives = 92/272 (33%), Gaps = 67/272 (24%)

Query: 83  DSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIH 142
           D  F D    +GG     ++      Q +  + K  +C+ F E G C +GD C F+H I 
Sbjct: 360 DEDFYDEDMGDGGGGSYRSRDHDKPHQQSDKKGKV-ICKYFVE-GRCTWGDHCNFSHDIE 417

Query: 143 ELRSLTRHPKYKTELC---------------RTFHTIGFCPYGPRCHFIHN--AEERR-- 183
             +       Y T  C               + +HT G C  G  C F H+   EE R  
Sbjct: 418 LPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHTTGNCINGDDCMFSHDPLTEETREL 477

Query: 184 ---ALAGARDLSADRPRLQHSFSFAGFPSAAATAAATGLL---------DSPTSIT---- 227
               LA   +  A+  +        G           GLL          +PTS      
Sbjct: 478 LDKMLADDAEAGAEDEKEVEELKKQGINPLPKPPPGVGLLPTPPRPPGPQAPTSPNGRPM 537

Query: 228 ----PPPILSADDLLGSPTLPDGTNNPFA--------FSSQELASLF----------APS 265
               PPP        G P +P   + P +          ++++ SLF          A  
Sbjct: 538 QGGPPPPPPPPPPPPGPPQMPMPVHEPLSPQQLQQQDMYNKKIPSLFEIVVRPTGQLAEK 597

Query: 266 MGL--PGGGSPTTFLFRPMSESPHMFDSPPSP 295
           +G+  PG G P      PM   P+M   PP P
Sbjct: 598 LGVRFPGPGGPP----GPMGPGPNM--GPPGP 623


>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
           sapiens]
          Length = 886

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 49/185 (26%), Positives = 72/185 (38%), Gaps = 44/185 (23%)

Query: 127 GACKYGDKCQFAHGIHELRSLTRHPK-YKTELCRTFHTIGFCPYGPRCHFIHNAEERRAL 185
           G C+ GD CQ+ H   E +    HP+ YK+  C      G CP GP C F H        
Sbjct: 346 GKCENGDACQYCHTRTEQQF---HPEIYKSTKCNDMQQSGSCPRGPFCAFAH-------- 394

Query: 186 AGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPILSADDLLGSPTLPD 245
                   ++P L         PS+A        + SPT   P P+L      G  ++P 
Sbjct: 395 -------VEQPPLSDDLQ----PSSA--------VSSPTQ--PGPVLYMPSAAGD-SVPV 432

Query: 246 GTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLSDQEGY 305
             ++P A    +L++L   +  L   GSP+     P    P     PP+ +  +   E  
Sbjct: 433 SPSSPHA---PDLSALLCRNSSL---GSPSNLCGSP----PGSIRKPPNLEGIVFPGESG 482

Query: 306 LSSSS 310
           L+  S
Sbjct: 483 LAPGS 487



 Score = 37.0 bits (84), Expect = 0.025
 Identities = 62/262 (23%), Positives = 89/262 (33%), Gaps = 64/262 (24%)

Query: 115 YKTELC-RPFEENGAC-KYGDKCQFAHGIHELRS-------------------------- 146
           YKT +C    +  G C K G  C FAHG H+LRS                          
Sbjct: 201 YKTGICIHETDSKGNCTKNGLHCAFAHGPHDLRSPVYDIRELQAMEALQNGQTTVEGSIE 260

Query: 147 ---------------LTRHPK----------YKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
                          L+  P+          YKTE C+    +  C  G  C + HN+++
Sbjct: 261 GQSAGAASHAMIEKILSEEPRWQETAYVLGNYKTEPCKKPPRL--CRQGYACPYYHNSKD 318

Query: 182 RRALAGARDL-SADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPPIL----SADD 236
           RR         S+  P ++H   + G P       A     + T     P +      +D
Sbjct: 319 RRRSPRKHKYRSSPCPNVKHGDEW-GDPGKCENGDACQYCHTRTEQQFHPEIYKSTKCND 377

Query: 237 LLGSPTLPDGTNNPFAFSSQ-ELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSP 295
           +  S + P G    FA   Q  L+    PS  +     P   L+ P +    +  SP SP
Sbjct: 378 MQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAAGDSVPVSPSSP 437

Query: 296 QDSLSDQEGYLSSSSSSHSGSD 317
                D    L  +SS  S S+
Sbjct: 438 H--APDLSALLCRNSSLGSPSN 457



 Score = 30.0 bits (66), Expect = 3.1
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 120 CRPFEE-NGACKYGDKCQFAH---GIHELRSLTRHPKYKTELC-RTFHTIGFC-PYGPRC 173
           C  ++E  G C  GD+C F H   G  E R   R+  YKT +C     + G C   G  C
Sbjct: 166 CTKYDEATGLCPEGDECPFLHRTTGDTERRYHLRY--YKTGICIHETDSKGNCTKNGLHC 223

Query: 174 HFIHNAEERRA 184
            F H   + R+
Sbjct: 224 AFAHGPHDLRS 234



 Score = 29.6 bits (65), Expect = 4.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 109 QVNSSRYKTELCRPFEENGACKYGDKCQFAH 139
           Q +   YK+  C   +++G+C  G  C FAH
Sbjct: 364 QFHPEIYKSTKCNDMQQSGSCPRGPFCAFAH 394


>gi|156105697 ring finger and CCCH-type zinc finger domains 2
           isoform 1 [Homo sapiens]
          Length = 1191

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 19/50 (38%), Positives = 23/50 (46%)

Query: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTF 161
           +S+YKT +CR   + G C  G  C FAH   EL       K      RTF
Sbjct: 408 NSKYKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTF 457



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 17/40 (42%), Positives = 20/40 (50%)

Query: 142 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
           HE      + KYKT +CR     G CP G  C F H+ EE
Sbjct: 400 HETPQPQPNSKYKTSMCRDLRQQGGCPRGTNCTFAHSQEE 439


>gi|156105699 ring finger and CCCH-type zinc finger domains 2
           isoform 2 [Homo sapiens]
          Length = 1064

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 19/50 (38%), Positives = 23/50 (46%)

Query: 112 SSRYKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTF 161
           +S+YKT +CR   + G C  G  C FAH   EL       K      RTF
Sbjct: 408 NSKYKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTF 457



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 17/40 (42%), Positives = 20/40 (50%)

Query: 142 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
           HE      + KYKT +CR     G CP G  C F H+ EE
Sbjct: 400 HETPQPQPNSKYKTSMCRDLRQQGGCPRGTNCTFAHSQEE 439


>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
          Length = 329

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 106 GGGQVNSSRYKTE--LCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHT 163
           GGG   S    T+   CR F  +G CK GD C+++H + +           + +C+ F  
Sbjct: 45  GGGSDGSGGGWTKQVTCRYFM-HGVCKEGDNCRYSHDLSD--------SPYSVVCKYFQR 95

Query: 164 IGFCPYGPRCHFIHNAEERRALAGARDLS 192
            G+C YG RC + H+   ++  A A +L+
Sbjct: 96  -GYCIYGDRCRYEHSKPLKQEEATATELT 123



 Score = 30.0 bits (66), Expect = 3.1
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 116 KTELCRPFEENGACKYGDKCQFAHG 140
           K +LC P+   G C+YG+ C + HG
Sbjct: 210 KKQLC-PYAAVGECRYGENCVYLHG 233


>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
          Length = 482

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 106 GGGQVNSSRYKTE--LCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHT 163
           GGG   S    T+   CR F  +G CK GD C+++H + +           + +C+ F  
Sbjct: 45  GGGSDGSGGGWTKQVTCRYFM-HGVCKEGDNCRYSHDLSD--------SPYSVVCKYFQR 95

Query: 164 IGFCPYGPRCHFIHNAEERRALAGARDLS 192
            G+C YG RC + H+   ++  A A +L+
Sbjct: 96  -GYCIYGDRCRYEHSKPLKQEEATATELT 123



 Score = 30.0 bits (66), Expect = 3.1
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 116 KTELCRPFEENGACKYGDKCQFAHG 140
           K +LC P+   G C+YG+ C + HG
Sbjct: 210 KKQLC-PYAAVGECRYGENCVYLHG 233


>gi|193788659 cleavage and polyadenylation specific factor 4-like
           [Homo sapiens]
          Length = 179

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 15/75 (20%)

Query: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCH 174
           +K++ C P+ + G CK G  C++ H +  +  L              + +GFCP GP+C 
Sbjct: 119 FKSQDC-PWYDQGFCKDGPLCKYRH-VPRIMCLN-------------YLVGFCPEGPKCQ 163

Query: 175 FIHNAEERRALAGAR 189
           F     E + L G++
Sbjct: 164 FAQKIREFKLLPGSK 178


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 40/139 (28%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 208 PSAAATAAATGLLDSPTSITPPPILSADDLLGSPTLPDGTN-----NPFAFSSQELASLF 262
           PS   +  A     SP S   PP+    D L  P LP   N      P +      A++ 
Sbjct: 239 PSDLGSPPAPHASSSPPS--DPPLFHCSDALTPPPLPPSNNLPAHPGPASQPPVSSATMH 296

Query: 263 APSMGLPGGGSPTT-------FLFRPMSESPHMFDSPPSPQDS-LSDQEGYLSSSSSSHS 314
            P +  P GG+PT        FL   +  +      PP P  S L  +     + S+SHS
Sbjct: 297 LPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHS 356

Query: 315 GSDSPTLDNSRRLPIFSRL 333
            S  P+    RR P   RL
Sbjct: 357 SSLRPSQRRPRRPPTVFRL 375


>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
          Length = 291

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 18/122 (14%)

Query: 63  HQNQLLSSLKGE-PAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTE--- 118
           H+N     +K + P P     ++  R+    E   +  P +KQ    Q   +++  E   
Sbjct: 136 HKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGK--PKEKQQHLSQAFINQHTVERKG 193

Query: 119 --LCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFI 176
             +C+ F E   C  GD+C+F H     +        K E+C+ F+  G+C  G  C ++
Sbjct: 194 KQICKYFLER-KCIKGDQCKFDHDAEIEK--------KKEMCK-FYVQGYCTRGENCLYL 243

Query: 177 HN 178
           HN
Sbjct: 244 HN 245



 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 15/62 (24%)

Query: 116 KTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHF 175
           K E+C+ F   G C  G+ C + H  +               C+ +HT   C  G  C F
Sbjct: 222 KKEMCK-FYVQGYCTRGENCLYLHNEYP--------------CKFYHTGTKCYQGEYCKF 266

Query: 176 IH 177
            H
Sbjct: 267 SH 268


>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
          Length = 948

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 45/162 (27%), Positives = 63/162 (38%), Gaps = 38/162 (23%)

Query: 116 KTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHF 175
           K E+C  F + G C  G KC+  H               T LC  F   G CP G +C  
Sbjct: 752 KAEVCSDFLK-GYCPLGAKCKKKH---------------TLLCPDFARRGACPRGAQCQL 795

Query: 176 IHNAEERRA-------LAGARDLSADRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITP 228
           +H  ++R +         G  D +A R R+  S      PSA+           PT  TP
Sbjct: 796 LHRTQKRHSRRAATSPAPGPSDATA-RSRVSASHG-PRKPSAS---------QRPTRQTP 844

Query: 229 -PPILSADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGLP 269
               L+A  +   P  P G+ +P   SS + +S  + S   P
Sbjct: 845 SSAALTAAAVAAPPHCPGGSASP---SSSKASSSSSSSSSPP 883



 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 144 LRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
           +R   +  + + E C  ++  G C  G RC +IH+ E+
Sbjct: 659 IRQARQRREKRKEYCMYYNRFGRCNRGERCPYIHDPEK 696


>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
           isoform 2 [Homo sapiens]
          Length = 244

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 14/56 (25%)

Query: 122 PFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
           P+ + G CK+G  C             RH   +  +C  +  +GFCP GP C F+H
Sbjct: 125 PWYDRGFCKHGPLC-------------RHRHTRRVICVNY-LVGFCPEGPSCKFMH 166


>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
           isoform 1 [Homo sapiens]
          Length = 269

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 14/56 (25%)

Query: 122 PFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
           P+ + G CK+G  C             RH   +  +C  +  +GFCP GP C F+H
Sbjct: 125 PWYDRGFCKHGPLC-------------RHRHTRRVICVNY-LVGFCPEGPSCKFMH 166


>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
           sapiens]
          Length = 1189

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 11/84 (13%)

Query: 118 ELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
           ++C+ F E G C  GD+C+F H   EL         + E+C+ F+  G+C  G  C ++H
Sbjct: 276 QICKYFLE-GRCIKGDQCKFDHDA-ELEK-------RKEICK-FYLQGYCTKGENCIYMH 325

Query: 178 NAEERRAL-AGARDLSADRPRLQH 200
           N    +   +GA+    D  +  H
Sbjct: 326 NEFPCKFYHSGAKCYQGDNCKFSH 349


>gi|169211258 PREDICTED: similar to hCG2036610 [Homo sapiens]
          Length = 387

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 209 SAAATAAATGLLDSPTSITPPPILSADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGL 268
           S  ++  + G++   +  +  P  +A+  LGS   P G N P   +S   AS        
Sbjct: 61  STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASS------- 113

Query: 269 PGGGSPTTFLFRPMSESPHMFDSPPSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNSRR 326
           PG G P          SPH   +  +PQ+S  D+   +   +SS+    SP ++N RR
Sbjct: 114 PGPGGPAGQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRR 171


>gi|169211651 PREDICTED: similar to protein phosphatase 1,
           regulatory (inhibitor) subunit 2 [Homo sapiens]
          Length = 387

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 209 SAAATAAATGLLDSPTSITPPPILSADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGL 268
           S  ++  + G++   +  +  P  +A+  LGS   P G N P   +S   AS        
Sbjct: 61  STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASS------- 113

Query: 269 PGGGSPTTFLFRPMSESPHMFDSPPSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNSRR 326
           PG G P          SPH   +  +PQ+S  D+   +   +SS+    SP ++N RR
Sbjct: 114 PGPGGPAGQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRR 171


>gi|169210870 PREDICTED: similar to hCG2036610 [Homo sapiens]
          Length = 387

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 209 SAAATAAATGLLDSPTSITPPPILSADDLLGSPTLPDGTNNPFAFSSQELASLFAPSMGL 268
           S  ++  + G++   +  +  P  +A+  LGS   P G N P   +S   AS        
Sbjct: 61  STGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPGPRTSVSRASS------- 113

Query: 269 PGGGSPTTFLFRPMSESPHMFDSPPSPQDSLSDQEGYLSSSSSSHSGSDSPTLDNSRR 326
           PG G P          SPH   +  +PQ+S  D+   +   +SS+    SP ++N RR
Sbjct: 114 PGPGGPAGQEVNSPGCSPHSGPTCLNPQNSQQDRPRSILRKNSSNLMQKSPNVENPRR 171


>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
          Length = 416

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 120 CRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIH 177
           CR F  +G C+ G +C F+H +   +  T        +C+ ++  G+C YG RC + H
Sbjct: 8   CRYFM-HGVCREGSQCLFSHDLANSKPST--------ICK-YYQKGYCAYGTRCRYDH 55



 Score = 30.0 bits (66), Expect = 3.1
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 112 SSRYKTE--LCRPFEENGACKYGDKCQFAHG 140
           SS Y  E  LC P+   G C++GD C + HG
Sbjct: 161 SSSYSNEQQLC-PYAAAGECRFGDACVYLHG 190


>gi|54792138 helicase with zinc finger domain [Homo sapiens]
          Length = 1942

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 68  LSSLKGEPAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENG 127
           L +L  E   A S+  S +      EG       +  P G  + SS   T LC+ F E G
Sbjct: 135 LKTLLSETETATSNALSGYHVEDLDEGSCNGWHFRPPPRG--ITSSEEYT-LCKRFLEQG 191

Query: 128 ACKYGDKCQFAHGIHEL 144
            C+YG +C  AH   EL
Sbjct: 192 ICRYGAQCTSAHSQEEL 208



 Score = 29.3 bits (64), Expect = 5.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 145 RSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
           R +T   +Y   LC+ F   G C YG +C   H+ EE
Sbjct: 173 RGITSSEEYT--LCKRFLEQGICRYGAQCTSAHSQEE 207


>gi|12669915 E2F transcription factor 4 [Homo sapiens]
          Length = 413

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 11/121 (9%)

Query: 208 PSAAATAAATGLLDSPTSI-TPPPI----LSADDLLGSPTLPDGTNNPFAFSSQELASLF 262
           P A        LL SP+++ TPPP+    L+       P  P  T       S E+  + 
Sbjct: 204 PVAVPVPPPEDLLQSPSAVSTPPPLPKPALAQSQEASRPNSPQLTPTAVP-GSAEVQGMA 262

Query: 263 APSM-----GLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLSDQEGYLSSSSSSHSGSD 317
            P+      G PG  S  +     +   P   D+ P    +L D     SSSSSS S S+
Sbjct: 263 GPAAEITVSGGPGTDSKDSGELSSLPLGPTTLDTRPLQSSALLDSSSSSSSSSSSSSNSN 322

Query: 318 S 318
           S
Sbjct: 323 S 323


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 23/71 (32%), Positives = 32/71 (45%)

Query: 207  FPSAAATAAATGLLDSPTSITPPPILSADDLLGSPTLPDGTNNPFAFSSQELASLFAPSM 266
            FP AAAT  +T    + T+  P P  +   L+ SP +     +    S  +LASL    +
Sbjct: 1139 FPPAAATTTSTTTATATTTAVPAPTPAPQRLILSPDMQARLPSGEVVSIGQLASLAQRPV 1198

Query: 267  GLPGGGSPTTF 277
               GG  P TF
Sbjct: 1199 ANAGGSKPLTF 1209


>gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens]
          Length = 1693

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 10/130 (7%)

Query: 146  SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGARDLSADRPRLQ-HSFSF 204
            S  R P+  T +C+   + G   +GP+CH  + A+E+ AL   + L +        S  F
Sbjct: 1461 SFLRMPQTMT-VCQVKLSNGLLVHGPQCHSENEAKEKAALFALQQLGSLGMNFPLPSQVF 1519

Query: 205  AGFPSAAATAAATGLLDSPTSITPPPILSADDLLGSPTLPDGTNNPF---AFSSQELASL 261
            A +PSA            PT+   P   S+  L GS  +P G + P     F     +  
Sbjct: 1520 ANYPSAVPPGTIPPAFPPPTANIMP---SSSHLFGS--MPWGPSVPVPGKPFHHTLYSGT 1574

Query: 262  FAPSMGLPGG 271
               + G+PGG
Sbjct: 1575 MPMAGGIPGG 1584


>gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens]
          Length = 977

 Score = 35.4 bits (80), Expect = 0.073
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 96  ERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHELRS-LTRHPKYK 154
           E++  +     G        +  LC   ++  AC  GDKC+ AHG  EL   L R    K
Sbjct: 868 EKVFTSDSDASGWAFRFPMGEFRLCDRLQKGKACPDGDKCRCAHGQEELNEWLDRREVLK 927

Query: 155 TELCRTFHTIGFCP 168
            +L +    +  CP
Sbjct: 928 QKLAKARKDMLLCP 941



 Score = 29.3 bits (64), Expect = 5.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 119 LCRPFEENGACKYGDKCQFAHGIHELRSLTRHPK 152
           LC+       CKYGD C FA+   E+   T   K
Sbjct: 484 LCKDMINKQDCKYGDNCTFAYHQEEIDVWTEERK 517


>gi|5902158 ring finger protein 113A [Homo sapiens]
          Length = 343

 Score = 35.0 bits (79), Expect = 0.096
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 115 YKTELCRPFEENGACKYGDKCQFAH 139
           Y+ ++C+ ++E G C +GD C+F H
Sbjct: 197 YQPDICKDYKETGFCGFGDSCKFLH 221



 Score = 32.7 bits (73), Expect = 0.47
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
           Y+ ++C+ +   GFC +G  C F+H+  +
Sbjct: 197 YQPDICKDYKETGFCGFGDSCKFLHDRSD 225


>gi|30578416 ring finger protein 113B [Homo sapiens]
          Length = 322

 Score = 35.0 bits (79), Expect = 0.096
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 115 YKTELCRPFEENGACKYGDKCQFAH 139
           Y+ ++C+ ++E G C +GD C+F H
Sbjct: 191 YQPDICKDYKETGFCGFGDSCKFLH 215



 Score = 32.7 bits (73), Expect = 0.47
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
           Y+ ++C+ +   GFC +G  C F+H+  +
Sbjct: 191 YQPDICKDYKETGFCGFGDSCKFLHDRSD 219


>gi|21389577 hypothetical protein LOC146705 [Homo sapiens]
          Length = 525

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 38/136 (27%), Positives = 51/136 (37%), Gaps = 28/136 (20%)

Query: 198 LQHSFSFAGFPSAA--------ATAAATGLLDSPTSITPPPILSADDL-------LGSPT 242
           +Q + +FAG P             AAA  L  +  S T  P+  +  L       +GS  
Sbjct: 98  IQEAAAFAGPPDPLHGNSLYQKVRAAAQDLGSTLFSDTVLPLAPSQPLGTPPATGMGSQA 157

Query: 243 LPDGTNNPFAFSSQELASLFAPSMGLPGGGSPTTFLFRPMSESPHMFDSPPSPQDSLSDQ 302
            P  T   F +S +   +      G  GGG                 DS PS Q+S  + 
Sbjct: 158 RPHSTLQGFGYSKEHGRTAVRHQPGQAGGGWDE-------------LDSGPSSQNSSQNS 204

Query: 303 EGYLSSSSSSHSGSDS 318
           +    S S SHSGSDS
Sbjct: 205 DLSRVSDSGSHSGSDS 220


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,613,173
Number of Sequences: 37866
Number of extensions: 881343
Number of successful extensions: 3938
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 154
Number of HSP's that attempted gapping in prelim test: 3596
Number of HSP's gapped (non-prelim): 418
length of query: 338
length of database: 18,247,518
effective HSP length: 103
effective length of query: 235
effective length of database: 14,347,320
effective search space: 3371620200
effective search space used: 3371620200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.