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Search of human proteins with 157837979
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157837979 mediator complex subunit 8 isoform 1 [Homo
sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|155030190 mediator complex subunit 8 isoform 3 [Homo sapiens] 530 e-151
gi|157837979 mediator complex subunit 8 isoform 1 [Homo sapiens] 530 e-151
gi|110349717 titin isoform novex-2 [Homo sapiens] 37 0.014
gi|110349713 titin isoform novex-1 [Homo sapiens] 37 0.014
gi|110349715 titin isoform N2-B [Homo sapiens] 37 0.014
gi|239755298 PREDICTED: hypothetical protein [Homo sapiens] 37 0.024
gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo ... 37 0.024
gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo ... 37 0.024
gi|50345997 E1A binding protein p300 [Homo sapiens] 36 0.031
gi|91208420 bassoon protein [Homo sapiens] 35 0.090
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 33 0.26
gi|50428940 mediator complex subunit 25 [Homo sapiens] 33 0.26
gi|46358366 zinc finger protein 746 [Homo sapiens] 33 0.26
gi|44955929 calmodulin regulated spectrin-associated protein 1-l... 33 0.26
gi|223941846 zinc finger protein 652 [Homo sapiens] 32 0.45
gi|7662384 zinc finger protein 652 [Homo sapiens] 32 0.45
gi|168693669 zinc finger protein 683 [Homo sapiens] 32 0.45
gi|148727315 zinc finger protein 683 [Homo sapiens] 32 0.45
gi|156104874 envoplakin [Homo sapiens] 32 0.58
gi|239755020 PREDICTED: similar to solute carrier family 4 (anio... 32 0.76
gi|239749546 PREDICTED: similar to solute carrier family 4 (anio... 32 0.76
gi|239743698 PREDICTED: hypothetical protein XP_002342928 [Homo ... 32 0.76
gi|38569411 AP1 gamma subunit binding protein 1 isoform 2 [Homo ... 31 0.99
gi|38569409 AP1 gamma subunit binding protein 1 isoform 1 [Homo ... 31 0.99
gi|22202611 carboxypeptidase D precursor [Homo sapiens] 31 0.99
gi|38570058 hypothetical protein LOC80129 [Homo sapiens] 31 1.3
gi|12707580 paired-like homeobox 2b [Homo sapiens] 31 1.3
gi|94400925 synaptonemal complex protein 2-like [Homo sapiens] 31 1.3
gi|11761629 fibrinogen, alpha polypeptide isoform alpha prepropr... 30 1.7
gi|4503689 fibrinogen, alpha polypeptide isoform alpha-E preprop... 30 1.7
>gi|155030190 mediator complex subunit 8 isoform 3 [Homo sapiens]
Length = 301
Score = 530 bits (1366), Expect = e-151
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MQREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLN 60
MQREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLN
Sbjct: 1 MQREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLN 60
Query: 61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120
KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ
Sbjct: 61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120
Query: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTNA 180
EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTNA
Sbjct: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTNA 180
Query: 181 LVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQ 240
LVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQ
Sbjct: 181 LVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQ 240
Query: 241 MAQAGQPGKMPSGIKTNIKSASMHPYQR 268
MAQAGQPGKMPSGIKTNIKSASMHPYQR
Sbjct: 241 MAQAGQPGKMPSGIKTNIKSASMHPYQR 268
>gi|157837979 mediator complex subunit 8 isoform 1 [Homo sapiens]
Length = 268
Score = 530 bits (1366), Expect = e-151
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MQREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLN 60
MQREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLN
Sbjct: 1 MQREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLN 60
Query: 61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120
KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ
Sbjct: 61 KVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120
Query: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTNA 180
EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTNA
Sbjct: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTNA 180
Query: 181 LVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQ 240
LVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQ
Sbjct: 181 LVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQ 240
Query: 241 MAQAGQPGKMPSGIKTNIKSASMHPYQR 268
MAQAGQPGKMPSGIKTNIKSASMHPYQR
Sbjct: 241 MAQAGQPGKMPSGIKTNIKSASMHPYQR 268
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 37.4 bits (85), Expect = 0.014
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 10 ASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLNKVLKHEKTP 69
+SL+ L +QV D G + CK NEYG ++ + L + G + K+L E+ P
Sbjct: 4584 SSLEILRTQVVDC----GEYTCKASNEYGSVSCTATLT--VTVPGGEKKVRKLLP-ERKP 4636
Query: 70 LFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVE 118
+ +V++ VL +E+ + ++ VP+ KP EVE
Sbjct: 4637 EPKEEVVLKSVLRKRPEEEEPKVEPKKLEKVKKPAVPEPPPPKPVEEVE 4685
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 37.4 bits (85), Expect = 0.014
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 10 ASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLNKVLKHEKTP 69
+SL+ L +QV D G + CK NEYG ++ + L + G + K+L E+ P
Sbjct: 4517 SSLEILRTQVVDC----GEYTCKASNEYGSVSCTATLT--VTVPGGEKKVRKLLP-ERKP 4569
Query: 70 LFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVE 118
+ +V++ VL +E+ + ++ VP+ KP EVE
Sbjct: 4570 EPKEEVVLKSVLRKRPEEEEPKVEPKKLEKVKKPAVPEPPPPKPVEEVE 4618
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 37.4 bits (85), Expect = 0.014
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 10 ASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLNKVLKHEKTP 69
+SL+ L +QV D G + CK NEYG ++ + L + G + K+L E+ P
Sbjct: 4392 SSLEILRTQVVDC----GEYTCKASNEYGSVSCTATLT--VTVPGGEKKVRKLLP-ERKP 4444
Query: 70 LFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVE 118
+ +V++ VL +E+ + ++ VP+ KP EVE
Sbjct: 4445 EPKEEVVLKSVLRKRPEEEEPKVEPKKLEKVKKPAVPEPPPPKPVEEVE 4493
>gi|239755298 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 36.6 bits (83), Expect = 0.024
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 149 NLLEKISKEERESESGGLR----PNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQ 204
NL + ++ +SE R P + P TNA A GKG R GSSG Q
Sbjct: 82 NLEDSSPRDNSDSEISTRRESRVPVEAGVTPKGTNA--RACVLGKGGPPLRSPGSSGRRQ 139
Query: 205 AGQPGAGTIL---AGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSG 253
A + GAGT L A ++ P+ ++P + + A PG P+G
Sbjct: 140 AARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSPGAPPAG 191
>gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo
sapiens]
Length = 250
Score = 36.6 bits (83), Expect = 0.024
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 149 NLLEKISKEERESESGGLR----PNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQ 204
NL + ++ +SE R P + P TNA A GKG R GSSG Q
Sbjct: 35 NLEDSSPRDNSDSEISTRRESRVPVEAGVTPKGTNA--RACVLGKGGPPLRSPGSSGRRQ 92
Query: 205 AGQPGAGTIL---AGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSG 253
A + GAGT L A ++ P+ ++P + + A PG P+G
Sbjct: 93 AARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSPGAPPAG 144
>gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo
sapiens]
Length = 250
Score = 36.6 bits (83), Expect = 0.024
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 149 NLLEKISKEERESESGGLR----PNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQ 204
NL + ++ +SE R P + P TNA A GKG R GSSG Q
Sbjct: 35 NLEDSSPRDNSDSEISTRRESRVPVEAGVTPKGTNA--RACVLGKGGPPLRSPGSSGRRQ 92
Query: 205 AGQPGAGTIL---AGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSG 253
A + GAGT L A ++ P+ ++P + + A PG P+G
Sbjct: 93 AARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSPGAPPAG 144
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 36.2 bits (82), Expect = 0.031
Identities = 47/222 (21%), Positives = 89/222 (40%), Gaps = 19/222 (8%)
Query: 56 LNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDP 115
L L + L+ +PL + QV+ L +P ++Q + + + +P +P
Sbjct: 2051 LQNLLRTLRSPSSPLQQQQVLSILHANPQLLAAFIKQRAAKYANSNPQPIPG----QPGM 2106
Query: 116 EVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSN-----LLEKISKEERESESGGLRPNK 170
+ Q T + G + +Q++N M + L ++ +++ + GG+ P
Sbjct: 2107 PQGQPGLQPPTMPGQQGVHS-NPAMQNMNPMQAGVQRAGLPQQQPQQQLQPPMGGMSPQA 2165
Query: 171 QTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPS 230
Q N + N + + + + + Q PG G +A + QQ Q G P
Sbjct: 2166 QQMN-MNHNTMPSQF---RDILRRQQMMQQQQQQGAGPGIGPGMANHNQFQQPQGVGYPP 2221
Query: 231 QQQPM----LSGVQMAQAGQPGKMPSGIKTNIKSASMHPYQR 268
QQQ + +Q GQ G++P + AS+ YQ+
Sbjct: 2222 QQQQRMQHHMQQMQQGNMGQIGQLPQALGAE-AGASLQAYQQ 2262
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 34.7 bits (78), Expect = 0.090
Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 27/163 (16%)
Query: 106 PDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGG 165
P L++K +P+ + Q + Q Q S ++ S + + +++ + G
Sbjct: 3732 PAALQSKAEPQAQPQ-----LQGRQAAPGPQQSQSPSSRQIPSGAASRQPQTQQQQQGLG 3786
Query: 166 LRPNKQTFN---------PTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAG 216
L+P +Q PT T A + G PS ++GP AG P A G
Sbjct: 3787 LQPPQQALTQARLQQQSQPT-TRGSAPAASQPAGKPQPGPSTATGPQPAGPPRAEQ-TNG 3844
Query: 217 TSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIK 259
+ G + G Q QP PG P+G+K +
Sbjct: 3845 SKGTAKAPQQGRAPQAQP-----------APGPGPAGVKAGAR 3876
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 33.1 bits (74), Expect = 0.26
Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 20/139 (14%)
Query: 131 IGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTNALVAAVAFGKG 190
+GA + ++ L + + L S S+ P+ +F+ +A + G
Sbjct: 817 LGAGQTPRHLKRLQSLIPSALGSASPASSPSQVD--TPSSSSFHIQQ----LAGFSAPAG 870
Query: 191 LSNWRPSGSSGP--GQAGQPG--------AGTILAGTSGLQQVQMAGAPSQQQPMLS--- 237
LS PS SS P G G P A T +AG + S P+L+
Sbjct: 871 LSPLLPSSSSSPPPGACGSPSAPTPSAGVAATTIAGFGHFHKALGGSLSSSDSPLLTPLQ 930
Query: 238 -GVQMAQAGQPGKMPSGIK 255
G + QA QP P G +
Sbjct: 931 PGARSPQAAQPSPAPPGAR 949
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 33.1 bits (74), Expect = 0.26
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 157 EERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSG---PGQAGQPGAGTI 213
E +++ GL P P A F + + P G G P A QP +
Sbjct: 290 EAAKNQKAGLGPRFSPITPLQQAAPGVGPPFSQAPAPQLPPGPPGAPKPPPASQPSLVST 349
Query: 214 LAGTSGLQQVQMAGAPSQQQPM----LSGVQMAQAGQP 247
+A SGL GAPS + +SG AQ G P
Sbjct: 350 VAPGSGLAPTAQPGAPSMAGTVAPGGVSGPSPAQLGAP 387
>gi|46358366 zinc finger protein 746 [Homo sapiens]
Length = 644
Score = 33.1 bits (74), Expect = 0.26
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 153 KISKEERESESGGLRPNKQTFNPTD----TNALVAAVAFGKGLSNWRPSGSSGPGQA--G 206
K+ ++E +R N +T D +++ + GK NWR G P
Sbjct: 112 KLEDWQKELYKHVMRGNYETLVSLDYAISKPEVLSQIEQGKEPCNWRRPGPKIPDVPVDP 171
Query: 207 QPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQP--GKMPSGI 254
PG+G + L Q++ G Q+ GV+ AGQP G+ P G+
Sbjct: 172 SPGSGPPVPAPDLLMQIKQEGELQLQEQQALGVEAWAAGQPDIGEEPWGL 221
>gi|44955929 calmodulin regulated spectrin-associated protein 1-like 1
[Homo sapiens]
Length = 1478
Score = 33.1 bits (74), Expect = 0.26
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 29/178 (16%)
Query: 18 QVADLKNS----LGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLNKVLKHEKTPLFRN 73
Q+ D K S L S I ++ R T PS S + + +K ++TP
Sbjct: 929 QIRDFKPSKQAGLSSAIAPFSSDSPRPTHPSPQSS------NRKSASFSVKSQRTPRPNE 982
Query: 74 QVIIPL--VLSPDRDED----LMRQTEGRVPV-------FSHEVVPDHLRTKPDPEVEEQ 120
I PL L+P R D L R + +VP+ F + P +KP EV+++
Sbjct: 983 LKITPLNRTLTPPRSVDSLPRLRRFSPSQVPIQTRSFVCFGDDGEPQLKESKPKEEVKKE 1042
Query: 121 EKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFN-PTD 177
E + + G + +K+I+ S +L +E+ L PN+ N PT+
Sbjct: 1043 ELESKGTLEQRGHNPEEKEIKPFESTVSEVLSL-----PVTETVCLTPNEDQLNQPTE 1095
>gi|223941846 zinc finger protein 652 [Homo sapiens]
Length = 606
Score = 32.3 bits (72), Expect = 0.45
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 34 ENEYGRLTWPSVLDSFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQT 93
E Y R T +V D A+ + N+ + + E+ R Q+I+ + L+ + +
Sbjct: 77 EQPYFRET-RAVSDVHAVKEDRENSDDTEEEEEEVSYKREQIIVEVNLN----NQTLNVS 131
Query: 94 EGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEK 153
+G V S L+T + E EE E++ T D+ G + QK+ + ++EK
Sbjct: 132 KGEKGVSSQSKETPVLKTSSEEEEEESEEEATDDSNDYGENEKQKKKE-------KIVEK 184
Query: 154 ISKEERES 161
+S +R +
Sbjct: 185 VSVTQRRT 192
>gi|7662384 zinc finger protein 652 [Homo sapiens]
Length = 606
Score = 32.3 bits (72), Expect = 0.45
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 12/128 (9%)
Query: 34 ENEYGRLTWPSVLDSFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQT 93
E Y R T +V D A+ + N+ + + E+ R Q+I+ + L+ + +
Sbjct: 77 EQPYFRET-RAVSDVHAVKEDRENSDDTEEEEEEVSYKREQIIVEVNLN----NQTLNVS 131
Query: 94 EGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEK 153
+G V S L+T + E EE E++ T D+ G + QK+ + ++EK
Sbjct: 132 KGEKGVSSQSKETPVLKTSSEEEEEESEEEATDDSNDYGENEKQKKKE-------KIVEK 184
Query: 154 ISKEERES 161
+S +R +
Sbjct: 185 VSVTQRRT 192
>gi|168693669 zinc finger protein 683 [Homo sapiens]
Length = 504
Score = 32.3 bits (72), Expect = 0.45
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 194 WRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSG 253
++ SG + P QA PGAG + GL++ MA +P+++ P+ S A P K +G
Sbjct: 260 FQASGQALPSQARNPGAGAAPTDSPGLERGGMA-SPAKRVPLSSQTGTAALPYPLKKKNG 318
>gi|148727315 zinc finger protein 683 [Homo sapiens]
Length = 504
Score = 32.3 bits (72), Expect = 0.45
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 194 WRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSG 253
++ SG + P QA PGAG + GL++ MA +P+++ P+ S A P K +G
Sbjct: 260 FQASGQALPSQARNPGAGAAPTDSPGLERGGMA-SPAKRVPLSSQTGTAALPYPLKKKNG 318
>gi|156104874 envoplakin [Homo sapiens]
Length = 2033
Score = 32.0 bits (71), Expect = 0.58
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 90 MRQTEGRVPVFSHEVVPDHL-RTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCS 148
+++ E R P +++ + + + + DP++E+ +T+A R D + Q+ LN+ C
Sbjct: 1446 IQELEKRPPTVQEKIIMEEVVKLEKDPDLEK-----STEALRWDLDQEKTQVTELNRECK 1500
Query: 149 NL------LEKISKEER 159
NL L+K +E+
Sbjct: 1501 NLQVQIDVLQKAKSQEK 1517
>gi|239755020 PREDICTED: similar to solute carrier family 4 (anion
exchanger), member 1, adaptor protein [Homo sapiens]
Length = 210
Score = 31.6 bits (70), Expect = 0.76
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 89 LMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQ 123
L +T G++P E+ P +R K +PEVEE+E++
Sbjct: 9 LKTRTAGKLPPKHPELPPTLMRMKDEPEVEEEEEE 43
>gi|239749546 PREDICTED: similar to solute carrier family 4 (anion
exchanger), member 1, adaptor protein [Homo sapiens]
Length = 210
Score = 31.6 bits (70), Expect = 0.76
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 89 LMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQ 123
L +T G++P E+ P +R K +PEVEE+E++
Sbjct: 9 LKTRTAGKLPPKHPELPPTLMRMKDEPEVEEEEEE 43
>gi|239743698 PREDICTED: hypothetical protein XP_002342928 [Homo
sapiens]
Length = 210
Score = 31.6 bits (70), Expect = 0.76
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 89 LMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQ 123
L +T G++P E+ P +R K +PEVEE+E++
Sbjct: 9 LKTRTAGKLPPKHPELPPTLMRMKDEPEVEEEEEE 43
>gi|38569411 AP1 gamma subunit binding protein 1 isoform 2 [Homo
sapiens]
Length = 1302
Score = 31.2 bits (69), Expect = 0.99
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 180 ALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAP--SQQQPMLS 237
AL G G + +GS+G G P AG I +GL +Q G P S QP +
Sbjct: 2 ALRPGAGSGGGGAAGAGAGSAGGGGFMFPVAGGIRPPQAGLMPMQQQGFPMVSVMQPNMQ 61
Query: 238 GV-------QMAQAGQPGKMPSGIKTNIKSASMHPY 266
G+ QM+Q P M +GI A+ PY
Sbjct: 62 GIMGMNYSSQMSQG--PIAMQAGIPMGPMPAAGMPY 95
>gi|38569409 AP1 gamma subunit binding protein 1 isoform 1 [Homo
sapiens]
Length = 1314
Score = 31.2 bits (69), Expect = 0.99
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 180 ALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAP--SQQQPMLS 237
AL G G + +GS+G G P AG I +GL +Q G P S QP +
Sbjct: 2 ALRPGAGSGGGGAAGAGAGSAGGGGFMFPVAGGIRPPQAGLMPMQQQGFPMVSVMQPNMQ 61
Query: 238 GV-------QMAQAGQPGKMPSGIKTNIKSASMHPY 266
G+ QM+Q P M +GI A+ PY
Sbjct: 62 GIMGMNYSSQMSQG--PIAMQAGIPMGPMPAAGMPY 95
>gi|22202611 carboxypeptidase D precursor [Homo sapiens]
Length = 1380
Score = 31.2 bits (69), Expect = 0.99
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 120 QEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFN--PTD 177
++ + TT GA+AA+ Q E++ RE+ + GL + F+ +
Sbjct: 35 KKAEATTTTTSAGAEAAEGQFDRYYHE-----EELESALREAAAAGLPGLARLFSIGRSV 89
Query: 178 TNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQMAG 227
+ + GL + P G +GP AG AG +L G QV++ G
Sbjct: 90 EGRPLWVLRLTAGLGSLIPEGDAGPDAAGPDAAGPLLPGR---PQVKLVG 136
>gi|38570058 hypothetical protein LOC80129 [Homo sapiens]
Length = 715
Score = 30.8 bits (68), Expect = 1.3
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 116 EVEEQEKQLTTDAAR--IGADAAQKQIQSLNKMCSNLLEKISKEERESESGGLRPNK 170
E+EE+ L+T R I A AA K+ Q L K L EK+ K +E+E + +K
Sbjct: 107 ELEEESAALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSK 163
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 30.8 bits (68), Expect = 1.3
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 133 ADAAQKQIQSLNKMCSNLLEKISKEERESE---SGGLRPNKQTFNPTDTNALVAAVAFGK 189
A AA + S K + + SKE + ++ +GG PN P T + A G
Sbjct: 162 AAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPN-----PNPTPSCGANGGGGG 216
Query: 190 GLSNWRPSGSSGPG-QAGQPGAGTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPG 248
G S G++GPG G+PG G A + A A + + + Q PG
Sbjct: 217 GPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPG 276
Query: 249 KMP 251
P
Sbjct: 277 PGP 279
>gi|94400925 synaptonemal complex protein 2-like [Homo sapiens]
Length = 812
Score = 30.8 bits (68), Expect = 1.3
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 137 QKQIQSLNKMCSNLLEKISKEERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRP 196
++ + K+ S L K KE+RES SG R +Q T+ ++A + L
Sbjct: 405 KQMLPDQTKISSELFSKSDKEDRESPSGLERETEQAEESTNMVEFMSA-EDDRCLITLHL 463
Query: 197 SGSSGPGQAGQPGAGTILAGTSGLQQVQMAGAPS-QQQP 234
+ S P G+P A S LQ V G P QQP
Sbjct: 464 NDQSEPPVIGEP------ASDSHLQPVPPFGVPDFPQQP 496
>gi|11761629 fibrinogen, alpha polypeptide isoform alpha
preproprotein [Homo sapiens]
Length = 644
Score = 30.4 bits (67), Expect = 1.7
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 190 GLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQ 221
G + W+P GSSGPG G +G+ G++G Q
Sbjct: 317 GTATWKP-GSSGPGSTGSWNSGSSGTGSTGNQ 347
>gi|4503689 fibrinogen, alpha polypeptide isoform alpha-E
preproprotein [Homo sapiens]
Length = 866
Score = 30.4 bits (67), Expect = 1.7
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 190 GLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQ 221
G + W+P GSSGPG G +G+ G++G Q
Sbjct: 317 GTATWKP-GSSGPGSTGSWNSGSSGTGSTGNQ 347
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,527,953
Number of Sequences: 37866
Number of extensions: 529014
Number of successful extensions: 2257
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 2171
Number of HSP's gapped (non-prelim): 172
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.