Search of human proteins with 157743259

Search of human proteins with 157743259

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|157743259 H6 family homeobox 3 [Homo sapiens]
         (357 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|157743259 H6 family homeobox 3 [Homo sapiens]                      721   0.0  
gi|116805350 homeo box (H6 family) 1 [Homo sapiens]                   181   7e-46
gi|70608170 H6 family homeobox 2 [Homo sapiens]                       162   6e-40
gi|4502365 NK3 homeobox 2 [Homo sapiens]                              102   5e-22
gi|39930383 BarH-like homeobox 2 [Homo sapiens]                       100   3e-21
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap...    96   6e-20
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]             92   5e-19
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap...    91   1e-18
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]                90   4e-18
gi|24497589 aristaless related homeobox [Homo sapiens]                 90   4e-18
gi|226437602 NK1 homeobox 2 [Homo sapiens]                             89   6e-18
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  88   1e-17
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  87   2e-17
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  87   3e-17
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  87   3e-17
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]                  87   3e-17
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]                  86   4e-17
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]                   85   1e-16
gi|31377777 NK2 homeobox 8 [Homo sapiens]                              84   1e-16
gi|14149728 BarH-like homeobox 1 [Homo sapiens]                        84   1e-16
gi|27886557 msh homeobox 2 [Homo sapiens]                              83   4e-16
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap...    82   6e-16
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]    82   7e-16
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]                   82   7e-16
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]              82   7e-16
gi|148613882 homeobox A4 [Homo sapiens]                                82   1e-15
gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi...    82   1e-15
gi|118582284 msh homeobox 1 [Homo sapiens]                             81   1e-15
gi|89257348 homeo box HB9 [Homo sapiens]                               80   2e-15
gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]    80   3e-15

>gi|157743259 H6 family homeobox 3 [Homo sapiens]
          Length = 357

 Score =  721 bits (1860), Expect = 0.0
 Identities = 357/357 (100%), Positives = 357/357 (100%)

Query: 1   MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPAS 60
           MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPAS
Sbjct: 1   MPEPGPDAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPAS 60

Query: 61  AAAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPY 120
           AAAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPY
Sbjct: 61  AAAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPY 120

Query: 121 TLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEES 180
           TLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEES
Sbjct: 121 TLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEES 180

Query: 181 DSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVF 240
           DSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVF
Sbjct: 181 DSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVF 240

Query: 241 QLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAA 300
           QLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAA
Sbjct: 241 QLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAA 300

Query: 301 QRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSVPLLRPV 357
           QRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSVPLLRPV
Sbjct: 301 QRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSVPLLRPV 357


>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
          Length = 348

 Score =  181 bits (460), Expect = 7e-46
 Identities = 117/251 (46%), Positives = 139/251 (55%), Gaps = 33/251 (13%)

Query: 115 AWWYPYTLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDE 174
           A WYP      GG L  P+ S++      SP +G +    E      P    +  ++ + 
Sbjct: 114 ARWYPRAHGGYGGGLS-PDTSDR-----DSPETGEEMGRAEGAWPRGPGPGAVQREAAEL 167

Query: 175 IILEESDSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVF 234
                +   E   E    P AAG + G      G                 RKKKTRTVF
Sbjct: 168 AARGPAAGTEEASELAEVPAAAGETRGGVGVGGG-----------------RKKKTRTVF 210

Query: 235 SRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAAN 294
           SRSQVFQLESTFD+KRYLSS+ERAGLAASL LTETQVKIWFQNRRNKWKRQLAAELEAA+
Sbjct: 211 SRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAAS 270

Query: 295 LSHAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVS-------QPLLTFPHPVYY---S 344
           LS   AQR+VRVP+LYHE+  A  AA   A  P P++        PLL F   + Y   +
Sbjct: 271 LSPPGAQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPLLGFSGALAYPLAA 330

Query: 345 HPVVSSVPLLR 355
            P  +SVP LR
Sbjct: 331 FPAAASVPFLR 341


>gi|70608170 H6 family homeobox 2 [Homo sapiens]
          Length = 273

 Score =  162 bits (409), Expect = 6e-40
 Identities = 88/152 (57%), Positives = 111/152 (73%), Gaps = 13/152 (8%)

Query: 202 AAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 261
           A + +PG+E  + G    E++    KKKTRTVFSRSQV+QLESTFDMKRYLSSSERA LA
Sbjct: 126 AGSPSPGSERPRDGGA--ERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLA 183

Query: 262 ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAA 321
           +SL LTETQVK WFQNRRNKWKRQL+AELEAAN++HA+AQ +V +P+++ ++S       
Sbjct: 184 SSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVSMPLVFRDSSLLR---- 239

Query: 322 AAAGAPVPVSQPLLTFPHPVYYSHPVVSSVPL 353
                PVP S   L FP P+YY    +S++PL
Sbjct: 240 ----VPVPRS---LAFPAPLYYPGSNLSALPL 264


>gi|4502365 NK3 homeobox 2 [Homo sapiens]
          Length = 333

 Score =  102 bits (254), Expect = 5e-22
 Identities = 106/308 (34%), Positives = 135/308 (43%), Gaps = 55/308 (17%)

Query: 31  FSIKNLLNGDHHR---PPPKPQPPPRTLFAPASAAAAAAAAAAAAA--------KGALEG 79
           FSI+ +LN    R     P+ +P      AP   AA+ AAA A            GAL G
Sbjct: 12  FSIQAILNKKEERGGLAAPEGRP------APGGTAASVAAAPAVCCWRLFGERDAGALGG 65

Query: 80  AAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGGHLPRPEASEKAL 139
           A    L+            PA          E    W     L+         E   +  
Sbjct: 66  AEDSLLAS-----------PAGTRTAAGRTAESPEGWDSDSALSE--------ENESRRR 106

Query: 140 LRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESKK-EGEAAP----- 193
             D+  ASG        L    P  +   SK  +E     SDSE S    G+ +P     
Sbjct: 107 CADARGASGAGLAGGS-LSLGQPVCELAASKDLEEEAAGRSDSEMSASVSGDRSPRTEDD 165

Query: 194 --GAAGASVGA--AAATPGAEDWKKGAESPEKKPAC---RKKKTRTVFSRSQVFQLESTF 246
             G  GA V A  + A  G      G    E++PA    RKK++R  FS +QVF+LE  F
Sbjct: 166 GVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRSRAAFSHAQVFELERRF 225

Query: 247 DMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWK-RQLAAELEAANLSHAAAQRIVR 305
           + +RYLS  ERA LAASL LTETQVKIWFQNRR K K RQ+AA+L    L+ A A + V 
Sbjct: 226 NHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADL----LASAPAAKKVA 281

Query: 306 VPILYHEN 313
           V +L  ++
Sbjct: 282 VKVLVRDD 289


>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
          Length = 387

 Score =  100 bits (248), Expect = 3e-21
 Identities = 101/343 (29%), Positives = 141/343 (41%), Gaps = 57/343 (16%)

Query: 7   DAAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAA 66
           D  GTA + P      PP P     + ++     HH      QPPP              
Sbjct: 56  DTVGTAPSSPISVTMEPPEPHLVADATQH-----HHHLHHSQQPPP-------------- 96

Query: 67  AAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAG 126
              AAA   +L+                   +P Q+  LP       P    P  L  A 
Sbjct: 97  --PAAAPTQSLQ------------------PLPQQQQPLPPQQPPPPP----PQQLGSAA 132

Query: 127 GHLPRPEASE---KALLRDSSPASGTDRDSPEPLLKADPDHK-ELDSKSPDEIILEESDS 182
              PR   S    K +L DS P +     +P     + P H  + +S +  E    + + 
Sbjct: 133 S-APRTSTSSFLIKDILGDSKPLAAC---APYSTSVSSPHHTPKQESNAVHESFRPKLEQ 188

Query: 183 EESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQL 242
           E+SK + +    +            G  +     ESP  + A + +K RT FS  Q+ QL
Sbjct: 189 EDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVR-AKKPRKARTAFSDHQLNQL 247

Query: 243 ESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELE--AANLSHAAA 300
           E +F+ ++YLS  +R  LAA+L+LT+TQVK W+QNRR KWKRQ A  LE  A   +++A 
Sbjct: 248 ERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSAL 307

Query: 301 QRIVRVPILYHEN---SAAEGAAAAAAGAPVPVSQPLLTFPHP 340
           QR+   P  YH +   S     AAAAA A           PHP
Sbjct: 308 QRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHP 350


>gi|148746211 NK2 transcription factor related, locus 3 [Homo
           sapiens]
          Length = 364

 Score = 95.5 bits (236), Expect = 6e-20
 Identities = 63/152 (41%), Positives = 81/152 (53%), Gaps = 2/152 (1%)

Query: 180 SDSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQV 239
           S+ +E ++E E     +  S     +   A D K   ES   KP  R+K  R +FS++QV
Sbjct: 102 SEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKP-RVLFSQAQV 160

Query: 240 FQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA-AELEAANLSHA 298
           F+LE  F  +RYLS+ ER  LA+SL LT TQVKIWFQNRR K KRQ     LE    +  
Sbjct: 161 FELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPP 220

Query: 299 AAQRIVRVPILYHENSAAEGAAAAAAGAPVPV 330
              R V VP+L  +       +A A GAP  V
Sbjct: 221 PPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSV 252



 Score = 30.4 bits (67), Expect = 2.5
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 15/78 (19%)

Query: 20  PPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPA-------------SAAAAAA 66
           PPPPP     P  +++        P  +    P ++ A A             SAAAAAA
Sbjct: 219 PPPPPRRVAVPVLVRD--GKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAA 276

Query: 67  AAAAAAAKGALEGAAGFA 84
           AAAAAAA  A   + G A
Sbjct: 277 AAAAAAAAAAYSSSYGCA 294


>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
          Length = 363

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 82/278 (29%), Positives = 118/278 (42%), Gaps = 41/278 (14%)

Query: 46  PKPQPPPRTLFAPASAAAAAAAAAAAAAKGALE--GAAGFALSQVGDLAFPRFEIPAQRF 103
           P    PP   + P   AAAAAAAAA AA+   E  G       +  +L   R ++     
Sbjct: 106 PSFAEPPDAFYGPQELAAAAAAAAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPP 165

Query: 104 ALPAHYLERSPAWWYPYTLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPD 163
             P H+ E  P+        PA G +   +  EK       PA     +        D  
Sbjct: 166 PPPPHFSETFPS-------LPAEGKVYSSD-EEKLEASAGDPAGSEQEEEGSGGDSEDDG 217

Query: 164 HKELDSKSPDEIILEESDSEESKKEGEAAPGA-AGASVGAAAATPGAEDWKKGAESPEKK 222
             +  +  P  ++       + K +G    GA  GA V A    PG              
Sbjct: 218 FLDSSAGGPGALL-----GPKPKLKGSLGTGAEEGAPVTAGVTAPGG------------- 259

Query: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
              + ++ RT F+  Q+ +LE  F  K+YLS +ER+ +A +L L+E QVKIWFQNRR KW
Sbjct: 260 ---KSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKW 316

Query: 283 KRQLAAELEAANLSHAAAQRI----VRVPILYHENSAA 316
           KR     ++A N+S  + + +    + VPI  H N  A
Sbjct: 317 KR-----IKAGNVSSRSGEPVRNPKIVVPIPVHVNRFA 349


>gi|210147470 NK2 transcription factor related, locus 6 [Homo
           sapiens]
          Length = 219

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 62/155 (40%), Positives = 82/155 (52%), Gaps = 10/155 (6%)

Query: 184 ESKKEGEAAPGAAGAS-VGAAAATP-----GAEDWKKGAESPEKKPACRKKKTRTVFSRS 237
           ++++ GE  PG   AS +G     P      + D  +G  S + K A +++K R +FS++
Sbjct: 2   DAERMGEPQPGLNAASPLGGGTRVPERGVGNSGDSVRGGRSEQPK-ARQRRKPRVLFSQA 60

Query: 238 QVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA-AELEAANLS 296
           QV  LE  F  +RYLS+ ER  LA++L LT TQVKIWFQNRR K KRQ     LE A   
Sbjct: 61  QVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELA--G 118

Query: 297 HAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVS 331
           H    R V VP+L  +     G    A   P P S
Sbjct: 119 HPLTPRRVAVPVLVRDGKPCLGPGPGAPAFPSPYS 153


>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
          Length = 411

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 88/307 (28%), Positives = 123/307 (40%), Gaps = 38/307 (12%)

Query: 8   AAGTASAQPQPPPPPPPAPKESP--FSIKNLLN----GDHHRPPPKPQPPPRTLFAPASA 61
           A+ T  A P+      PA    P  FS+ ++L+        R      P      AP ++
Sbjct: 20  ASDTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCAS 79

Query: 62  AAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYT 121
           A  A A AA+      E     AL+  G +     E P       A   E +    Y   
Sbjct: 80  APCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYS-- 137

Query: 122 LTPAGGHLPRPEASEKALL-----RDSSPASGTDRDSPEPL------------------L 158
            +  GGH P  ++ ++         D +P +   R + E                     
Sbjct: 138 -SGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAET 196

Query: 159 KADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAES 218
            A P     ++ +P     E S   +    G AAPG AG +    A     +  + G++S
Sbjct: 197 DASPGATVDEAAAPGP--RENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDS 254

Query: 219 PEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNR 278
              KP    ++ RT F+  Q+  LE+ F   RYLS  ER  LA SL LTETQVKIWFQNR
Sbjct: 255 KSGKP----RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNR 310

Query: 279 RNKWKRQ 285
           R KWK+Q
Sbjct: 311 RTKWKKQ 317


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 107/369 (28%), Positives = 150/369 (40%), Gaps = 78/369 (21%)

Query: 8   AAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAAA 67
           AA TA+A P+   PPPP P                RP  +P           + AAAAAA
Sbjct: 113 AAATATAGPRGEAPPPPPPTA--------------RPGERPD---------GAGAAAAAA 149

Query: 68  AAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGG 127
           AAAAAA   L+      +SQ   ++  R +   +     A ++   PA      L   GG
Sbjct: 150 AAAAAAWDTLK------ISQAPQVSISRSKSYREN---GAPFVPPPPAL---DELGGPGG 197

Query: 128 HLPRPEASEKALLRDSSPASG----TDRDSPEPLLKADPDHKELDSKSPDEIILEESDSE 183
                E    A    S+PA+G    T+ D  E L   + + +E +    DE  L E D+ 
Sbjct: 198 VTHPEERLGVAGGPGSAPAAGGGTGTEDDEEELLEDEEDEDEEEELLEDDEEELLEDDAR 257

Query: 184 ESKKEGE----AAPGAAGASVGAAAATPGAEDWKK-----------------------GA 216
              KE      AA GA  A+  AA AT G E   K                       G+
Sbjct: 258 ALLKEPRRCPVAATGAVAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGS 317

Query: 217 ESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQ 276
           +S E     ++++ RT F+  Q+ +LE  F    Y     R  LA  L LTE +V++WFQ
Sbjct: 318 DSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQ 377

Query: 277 NRRNKWKRQLAAELEA----------ANLSHAAAQRIVRVPILYHENS--AAEGAAAAAA 324
           NRR KW+++  A  +            + +H  +  +   P   H  +  +A  AAAAAA
Sbjct: 378 NRRAKWRKREKAGAQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAA 437

Query: 325 GAPVPVSQP 333
            A  P   P
Sbjct: 438 AAAFPSLPP 446



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 8   AAGTASAQPQPPPPPPPA---PKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPASAAAA 64
           AA  A+A P  PPPP  A   P  +P  +   L     R P    P    LF+  +   +
Sbjct: 434 AAAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLGAAVFRHPAFISPAFGRLFSTMAPLTS 493

Query: 65  AAAAAAAAAK--GALEGA 80
           A+ AAA   +   A+EGA
Sbjct: 494 ASTAAALLRQPTPAVEGA 511


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score = 89.0 bits (219), Expect = 6e-18
 Identities = 78/254 (30%), Positives = 100/254 (39%), Gaps = 40/254 (15%)

Query: 130 PRPEASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDE--IILEESDSEESKK 187
           P P  + K+L    +    + RD    L   D         SP E     EE D+E+ ++
Sbjct: 41  PAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQASPLEGSEAEEEEDAEDPRR 100

Query: 188 E------GEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPA----------------C 225
                      PG A +    A A    E  + G   P + P                 C
Sbjct: 101 PRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNC 160

Query: 226 RK-KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR 284
            K ++ RT F+  Q+  LE+ F   RYLS  ER  LA SL LTETQVKIWFQNRR KWK+
Sbjct: 161 AKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 220

Query: 285 QLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYS 344
           Q      AA +   A Q            +A  G    + G+P P     L F     YS
Sbjct: 221 QNPGADGAAQVGGGAPQ----------PGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYS 270

Query: 345 -----HPVVSSVPL 353
                 P  +S PL
Sbjct: 271 AANVLFPSAASFPL 284


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score = 88.2 bits (217), Expect = 1e-17
 Identities = 86/303 (28%), Positives = 121/303 (39%), Gaps = 42/303 (13%)

Query: 10  GTASAQPQPPPPPPPAPKESPFSIKNLLN----GDHHRPPPKPQPPPRTLFAPASAAAAA 65
           G  +A+P  P  P      + FS+ ++L+        R      P      AP ++A  A
Sbjct: 433 GAGAARPAAPLRP------TSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASAPCA 486

Query: 66  AAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPA 125
            A AA+      E     AL+  G +     E P       A   E +    Y    +  
Sbjct: 487 PAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKAGEAETNDTNGYS---SGG 543

Query: 126 GGHLPRPEASEKALL-----RDSSPASGTDRDSPEPL------------------LKADP 162
           GGH P  ++ ++         D +P +   R + E                      A P
Sbjct: 544 GGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASP 603

Query: 163 DHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKK 222
                ++ +P     E S        G AAPG AG +    A     +  + G++S   K
Sbjct: 604 GATVDEAAAPGP--RENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGK 661

Query: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
           P    ++ RT F+  Q+  LE+ F   RYLS  ER  LA SL LTETQVKIWFQNRR KW
Sbjct: 662 P----RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKW 717

Query: 283 KRQ 285
           K+Q
Sbjct: 718 KKQ 720


>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 653

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 47/97 (48%), Positives = 58/97 (59%), Gaps = 4/97 (4%)

Query: 189 GEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDM 248
           G AAPG AG +    A     +  + G++S   KP    ++ RT F+  Q+  LE+ F  
Sbjct: 63  GAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKP----RRARTAFTYEQLVALENKFKA 118

Query: 249 KRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 285
            RYLS  ER  LA SL LTETQVKIWFQNRR KWK+Q
Sbjct: 119 TRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 155


>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 73/234 (31%), Positives = 96/234 (41%), Gaps = 40/234 (17%)

Query: 142 DSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVG 201
           D+  A+G       PL  ++ + +E D++ P    L E       +     PG A +   
Sbjct: 91  DARDAAGPGAGQASPLEGSEAEEEE-DAEDPRRPRLRE-------RAARLLPGLARSPDA 142

Query: 202 AAAATPGAEDWKKGAESPEKKPA----------------CRK-KKTRTVFSRSQVFQLES 244
            A A    E  + G   P + P                 C K ++ RT F+  Q+  LE+
Sbjct: 143 PAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALEN 202

Query: 245 TFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIV 304
            F   RYLS  ER  LA SL LTETQVKIWFQNRR KWK+Q      AA +   A Q   
Sbjct: 203 KFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQ--- 259

Query: 305 RVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYS-----HPVVSSVPL 353
                    +A  G    + G+P P     L F     YS      P  +S PL
Sbjct: 260 -------PGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPL 306


>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 73/234 (31%), Positives = 96/234 (41%), Gaps = 40/234 (17%)

Query: 142 DSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVG 201
           D+  A+G       PL  ++ + +E D++ P    L E       +     PG A +   
Sbjct: 91  DARDAAGPGAGQASPLEGSEAEEEE-DAEDPRRPRLRE-------RAARLLPGLARSPDA 142

Query: 202 AAAATPGAEDWKKGAESPEKKPA----------------CRK-KKTRTVFSRSQVFQLES 244
            A A    E  + G   P + P                 C K ++ RT F+  Q+  LE+
Sbjct: 143 PAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALEN 202

Query: 245 TFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIV 304
            F   RYLS  ER  LA SL LTETQVKIWFQNRR KWK+Q      AA +   A Q   
Sbjct: 203 KFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQ--- 259

Query: 305 RVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYS-----HPVVSSVPL 353
                    +A  G    + G+P P     L F     YS      P  +S PL
Sbjct: 260 -------PGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPL 306


>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
          Length = 332

 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 73/234 (31%), Positives = 96/234 (41%), Gaps = 40/234 (17%)

Query: 142 DSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVG 201
           D+  A+G       PL  ++ + +E D++ P    L E       +     PG A +   
Sbjct: 91  DARDAAGPGAGQASPLEGSEAEEEE-DAEDPRRPRLRE-------RAARLLPGLARSPDA 142

Query: 202 AAAATPGAEDWKKGAESPEKKPA----------------CRK-KKTRTVFSRSQVFQLES 244
            A A    E  + G   P + P                 C K ++ RT F+  Q+  LE+
Sbjct: 143 PAGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALEN 202

Query: 245 TFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIV 304
            F   RYLS  ER  LA SL LTETQVKIWFQNRR KWK+Q      AA +   A Q   
Sbjct: 203 KFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAAQVGGGAPQ--- 259

Query: 305 RVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYS-----HPVVSSVPL 353
                    +A  G    + G+P P     L F     YS      P  +S PL
Sbjct: 260 -------PGAAGGGGGGGSGGSPGPPGTGALHFQTFPSYSAANVLFPSAASFPL 306


>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
          Length = 291

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 1/91 (1%)

Query: 202 AAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 261
           AAA TP     + G     + P  ++KK RT FSR Q+ +LE  F  ++YL+S+ERA LA
Sbjct: 142 AAALTPFTVTRRIGHPYQNRTPP-KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALA 200

Query: 262 ASLHLTETQVKIWFQNRRNKWKRQLAAELEA 292
            SL +T+ QVK WFQNRR KW+RQ A E EA
Sbjct: 201 KSLKMTDAQVKTWFQNRRTKWRRQTAEEREA 231


>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
          Length = 284

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 1/90 (1%)

Query: 203 AAATPGAEDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAA 262
           AA +P +   + G     + P  ++KK RT FSRSQV +LE  F  ++YL+S+ERA LA 
Sbjct: 134 AALSPFSGTRRIGHPYQNRTPP-KRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAK 192

Query: 263 SLHLTETQVKIWFQNRRNKWKRQLAAELEA 292
           +L +T+ QVK WFQNRR KW+RQ A E EA
Sbjct: 193 ALRMTDAQVKTWFQNRRTKWRRQTAEEREA 222


>gi|31377777 NK2 homeobox 8 [Homo sapiens]
          Length = 239

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 72/206 (34%), Positives = 92/206 (44%), Gaps = 38/206 (18%)

Query: 151 RDSPEPLL-KADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVGAAAATPGA 209
           R  PEP   + DP    LDS+       +ES  E S  +    P A  AS G+ A     
Sbjct: 27  RREPEPRAPQPDPCAAWLDSERGHYPSSDESSLETSPPDSSQRPSARPASPGSDAE---- 82

Query: 210 EDWKKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTET 269
                           ++KK R +FS++Q  +LE  F  +RYLS+ ER  LA+ L LT T
Sbjct: 83  ----------------KRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPT 126

Query: 270 QVKIWFQNRRNKWKRQLA------AELEAANLSHAA--AQRIVRVPILYHENSAAEG--- 318
           QVKIWFQN R K KR  A       +L A+   HAA    R V VP+L  +     G   
Sbjct: 127 QVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQPCGGGGG 186

Query: 319 ------AAAAAAGAPVPVSQPLLTFP 338
                 AA    GAP   + PL  +P
Sbjct: 187 GEVGTAAAQEKCGAPPAAACPLPGYP 212


>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
          Length = 327

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 11/148 (7%)

Query: 196 AGASVGAAAATPGAEDWKKGAESPEKKPACRKKK---TRTVFSRSQVFQLESTFDMKRYL 252
           +G++  + +     E+  +   S    P  R KK    RT F+  Q+ QLE +F+ ++YL
Sbjct: 144 SGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFERQKYL 203

Query: 253 SSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELE--AANLSHAAAQRIVRVPILY 310
           S  +R  LAASL+LT+TQVK W+QNRR KWKRQ A  LE  A   +++A QR+   P  Y
Sbjct: 204 SVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFY 263

Query: 311 HENSAAE---GAAA---AAAGAPVPVSQ 332
            ++  +    GAA        AP P  Q
Sbjct: 264 PQSLVSNLDPGAALYLYRGPSAPPPALQ 291


>gi|27886557 msh homeobox 2 [Homo sapiens]
          Length = 267

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 91/295 (30%), Positives = 122/295 (41%), Gaps = 47/295 (15%)

Query: 55  LFAPASAAAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSP 114
           LF+P     A  A       GA EGAA     +V  L F          ++ A   ++ P
Sbjct: 10  LFSPDEEGPAVVAGPGPGPGGA-EGAAEERRVKVSSLPF----------SVEALMSDKKP 58

Query: 115 AWWYPYTLTPAGGHLPRPEASEKALLRDS--SPASGTDRDSPEPLLKADPDHKELDSKSP 172
               P   +P    LP   AS  A LR    S     +  SP PL+K            P
Sbjct: 59  ----PKEASP----LPAESASAGATLRPLLLSGHGAREAHSPGPLVK------------P 98

Query: 173 DEIILEESDSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRT 232
            E    +S++ E        PG         + T       K             +K RT
Sbjct: 99  FETASVKSENSEDGAAWMQEPGRYSPPPRHMSPTTCTLRKHK-----------TNRKPRT 147

Query: 233 VFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEA 292
            F+ SQ+  LE  F  K+YLS +ERA  ++SL+LTETQVKIWFQNRR K KR   AELE 
Sbjct: 148 PFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEK 207

Query: 293 ANLSHAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPV 347
             +   AA+ ++          ++   AA+  GA  P  +P+L  P    Y+ PV
Sbjct: 208 LKM---AAKPMLPSSFSLPFPISSPLQAASIYGASYPFHRPVLPIPPVGLYATPV 259


>gi|111120318 NK6 transcription factor related, locus 1 [Homo
           sapiens]
          Length = 367

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 80/280 (28%), Positives = 113/280 (40%), Gaps = 49/280 (17%)

Query: 45  PPKPQPPPRTLFAPASAAAAAAAAAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFA 104
           PP P  PP +  + +S++++ +        G L+  A   LS +G         P Q  A
Sbjct: 41  PPLPAGPPSSS-SSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGSP-------PQQLSA 92

Query: 105 LPAHYLERSPAWWYPYTLTPAGGHLPRPEASEKALLRDSSP-------------ASGTDR 151
              H +    +   P     +G  LP    S  +    SS              A+    
Sbjct: 93  ATPHGINDILS--RPSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAA 150

Query: 152 DSPEPLLKADPDHKELDSKSPDEIILEESDSEESKKEGEAAPGAAGASVGAAAATPGAED 211
            SP  LL   P    L    P   +     +        AA  A G      A  PG   
Sbjct: 151 SSPAGLLAGLPRFSSLSPPPPPPGLYFSPSA--------AAVAAVGRYPKPLAELPGRTP 202

Query: 212 --WKKGAESP---EKKPAC-------------RKKKTRTVFSRSQVFQLESTFDMKRYLS 253
             W    +SP   + + AC             ++K TR  FS  Q+F LE TF+  +YL+
Sbjct: 203 IFWPGVMQSPPWRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLA 262

Query: 254 SSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293
             ERA LA SL +TE+QVK+WFQNRR KW+++ AAE+  A
Sbjct: 263 GPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATA 302



 Score = 33.5 bits (75), Expect = 0.30
 Identities = 43/137 (31%), Positives = 55/137 (40%), Gaps = 23/137 (16%)

Query: 6   PDAAGTASAQPQPPPPPPPAPKESPFSIKNLLN-------GDHHRPPPKPQPPPRTLFAP 58
           P A G  S+   PP     A   +P  I ++L+            P   P     +  + 
Sbjct: 74  PPATGGLSSLGSPPQQLSAA---TPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSS 130

Query: 59  ASAAAAAAAAAAAAAKGALEGAAGFALSQVGDLA-FPRFEIPAQRFALPAHYLERSPAWW 117
           ASA++A+AAAAAAAA      AA  A S  G LA  PRF   +     P  Y   S A  
Sbjct: 131 ASASSASAAAAAAAA------AAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAA-- 182

Query: 118 YPYTLTPAGGHLPRPEA 134
                  A G  P+P A
Sbjct: 183 ----AVAAVGRYPKPLA 195


>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
          Length = 324

 Score = 82.0 bits (201), Expect = 7e-16
 Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 3/117 (2%)

Query: 213 KKGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVK 272
           K  A++ E+  A R++K R +FS++QV++LE  F  +RYLS+ ER  LA+ L LT TQVK
Sbjct: 124 KTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVK 183

Query: 273 IWFQNRRNKWKRQ---LAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAAGA 326
           IWFQNRR K KRQ      EL           R + VP+L  +     G +A  A A
Sbjct: 184 IWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVRDGKPCLGDSAPYAPA 240



 Score = 29.3 bits (64), Expect = 5.7
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 15/139 (10%)

Query: 22  PPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPA--SAAAAAAAAAAAAAKGALEG 79
           P PA   +PFS+K++LN +  +         R+L A    SA   A  A ++    A + 
Sbjct: 3   PSPALTPTPFSVKDILNLEQQQ---------RSLAAAGELSARLEATLAPSSCMLAAFKP 53

Query: 80  AAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPA--WWYPYTLT-PAGGHLPRPEASE 136
            A +A  +      P       R   PA      PA   +YP   + P     PR E  E
Sbjct: 54  EA-YAGPEAAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKE 112

Query: 137 KALLRDSSPASGTDRDSPE 155
              L+ +     T+ D+ E
Sbjct: 113 LCALQKAVELEKTEADNAE 131


>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
          Length = 330

 Score = 82.0 bits (201), Expect = 7e-16
 Identities = 38/67 (56%), Positives = 50/67 (74%)

Query: 226 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 285
           +KKK RT F+R Q+ +LE  F  ++YL+S+ERA LA +L +T+ QVK WFQNRR KW+RQ
Sbjct: 200 KKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQ 259

Query: 286 LAAELEA 292
            A E EA
Sbjct: 260 TAEEREA 266


>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
          Length = 348

 Score = 82.0 bits (201), Expect = 7e-16
 Identities = 89/320 (27%), Positives = 127/320 (39%), Gaps = 72/320 (22%)

Query: 18  PPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAAAAAAAAAKGAL 77
           PPPPPPPA  ++           HH+ P  P     T F  + A   A  +   A     
Sbjct: 57  PPPPPPPALPQAALQPALPPAHPHHQIPSLP-----TGFCSSLAQGMALTSTLMAT---- 107

Query: 78  EGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGGHLPRPEASEK 137
                               +P    A P H    +   + P  L P GG+  + EA + 
Sbjct: 108 --------------------LPGGFSASPQHQEAAAARKFAPQPL-PGGGNFDKAEALQA 146

Query: 138 A-------LLRDSSPASGTDRDSPEPLLKA-------DPDHKELDSKSPDEIILEESDSE 183
                   L ++ S  + +  ++ +  L         D    E D K  +E    ESD +
Sbjct: 147 DAEDGKGFLAKEGSLLAFSAAETVQASLVGAVRGQGKDESKVEDDPKGKEESFSLESDVD 206

Query: 184 ESKKE---GEAA-----PGAA----GASVGAAAATPGAEDWKKGAESPEKKPACRKKKTR 231
            S  +   G+AA     PG A      S GAA +T                   + ++ R
Sbjct: 207 YSSDDNLTGQAAHKEEDPGHALEETPPSSGAAGSTTSTG---------------KNRRRR 251

Query: 232 TVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELE 291
           T F+  Q+ +LE  F  K+YLS +ER+ +A +L L+E QVKIWFQNRR KWKR  A    
Sbjct: 252 TAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAGNAN 311

Query: 292 AANLSHAAAQRIVRVPILYH 311
           +     +   +IV VPI  H
Sbjct: 312 SKTGEPSRNPKIV-VPIPVH 330


>gi|148613882 homeobox A4 [Homo sapiens]
          Length = 320

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 100/350 (28%), Positives = 124/350 (35%), Gaps = 67/350 (19%)

Query: 8   AAGTASAQPQPPPPPPPAPKESPFSIKNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAAA 67
           A G     P    PP P  +  P     L +    R P      PRT   PA  AAA   
Sbjct: 32  ADGGPGGGPGYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYP 91

Query: 68  AAAAAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWW--YPYTLTPA 125
           A  AA      G  G A         P+ E P  +   PAH L  S       P  L P 
Sbjct: 92  AHGAADTAYPYGYRGGASPGRP----PQPEQPPAQAKGPAHGLHASHVLQPQLPPPLQPR 147

Query: 126 GGHLPRPEASEKALLRDSSPASGTDRDSPE-PLLKADPDHKELDSKSPDEIILEESDSEE 184
                 P   E A      PA G+   +P  PLL AD        KSP            
Sbjct: 148 AVPPAAPRRCEAAPATPGVPAGGS---APACPLLLAD--------KSP------------ 184

Query: 185 SKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACR---KKKTRTVFSRSQVFQ 241
                          +G     P    W K        P+      K++RT ++R QV +
Sbjct: 185 ---------------LGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLE 229

Query: 242 LESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQ 301
           LE  F   RYL+   R  +A +L L+E QVKIWFQNRR KWK+                 
Sbjct: 230 LEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKD---------------- 273

Query: 302 RIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSV 351
              ++P     +S +  A+A   G     S  L   PHP   S PV SS+
Sbjct: 274 --HKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHP-STSTPVPSSI 320


>gi|28912912 NK6 transcription factor related, locus 2 [Homo
           sapiens]
          Length = 277

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 37/68 (54%), Positives = 51/68 (75%)

Query: 226 RKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQ 285
           +KK +R  FS  Q+F LE TF+  +YL+  ERA LA SL +TE+QVK+WFQNRR KW+++
Sbjct: 147 KKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKR 206

Query: 286 LAAELEAA 293
            AAE+ +A
Sbjct: 207 HAAEMASA 214


>gi|118582284 msh homeobox 1 [Homo sapiens]
          Length = 303

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 85/254 (33%), Positives = 110/254 (43%), Gaps = 61/254 (24%)

Query: 124 PAGGHLPRPEASEKALLRDSSPASGTDRDSPEP-----LLKADPDHKELDSKSPDEIILE 178
           PAGG   +  ++  A    ++ A G D +  +P     LL    +    D + P      
Sbjct: 24  PAGGGAGQAPSAAAA----TAAAMGADEEGAKPKVSPSLLPFSVEALMADHRKPGAKESA 79

Query: 179 ESDSEESKKEGEAA------PGAAGA-------------SVGAAAATPGAEDWKKGAESP 219
            + SE  +  G +A      PG+ GA             SVG     P  ED    AESP
Sbjct: 80  LAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLKLP--EDALVKAESP 137

Query: 220 EKK---------------------PAC--RKKKT----RTVFSRSQVFQLESTFDMKRYL 252
           EK                      PAC  RK KT    RT F+ +Q+  LE  F  K+YL
Sbjct: 138 EKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYL 197

Query: 253 SSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQRIVRVPILYHE 312
           S +ERA  ++SL LTETQVKIWFQNRR K KR   AELE   +    A + +  P  +  
Sbjct: 198 SIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM----AAKPMLPPAAFGL 253

Query: 313 NSAAEGAAAAAAGA 326
           +    G AA AA A
Sbjct: 254 SFPLGGPAAVAAAA 267


>gi|89257348 homeo box HB9 [Homo sapiens]
          Length = 401

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 90/284 (31%), Positives = 114/284 (40%), Gaps = 64/284 (22%)

Query: 58  PASAAAAAAAAAAAAAKGALEGA-AGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAW 116
           P +AAAAAAAAAAAAA G   G   G A    G        +PAQ  AL  H +      
Sbjct: 119 PGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAG--------LPAQA-ALYGHPV------ 163

Query: 117 WYPYTLTPAGGHLPRPEASEKALLRDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEII 176
            Y Y+   A   L    A +   L  S P          P   ADP      +   D+ +
Sbjct: 164 -YGYSAAAAAAAL----AGQHPALSYSYPQV----QGAHPAHPADPIKLGAGTFQLDQWL 214

Query: 177 LEESDSEESKKEGEAAPGAAGASVGAAAATPGAEDWKKGAESPEKKPACRKKKTRTVFSR 236
              +                     A    P   D+   A+S      CR+   RT F+ 
Sbjct: 215 RAST---------------------AGMILPKMPDFNSQAQS-NLLGKCRRP--RTAFTS 250

Query: 237 SQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLS 296
            Q+ +LE  F + +YLS  +R  +A SL LTETQVKIWFQNRR KWKR   A+ +AA  +
Sbjct: 251 QQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEA 310

Query: 297 HAAAQRIVRVPILYHENSAAEGAAAAAAGAPVPVSQPLLTFPHP 340
                          E     G  A   GA  P ++ LL  P P
Sbjct: 311 ---------------EKQKGGGGGAGKGGAEEPGAEELLGPPAP 339


>gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]
          Length = 273

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 74/247 (29%), Positives = 111/247 (44%), Gaps = 37/247 (14%)

Query: 142 DSSPASGTDRDS--PEPLLKADP-------DHKELDSKSPDEIILEESDSEESKKEGEAA 192
           + S A G + ++  PEP  +A P         + L  K+P     + SD+  ++    + 
Sbjct: 25  EGSVAEGPEEENEGPEPAKRAGPLGQGALDAVQSLPLKNP---FYDSSDNPYTRWLA-ST 80

Query: 193 PGAAGASVGAAAATPGAEDWKKGAE-SPEKKP------------ACRKKKTRTVFSRSQV 239
            G   +  G AA  P  +   K  E S ++ P            A +K+K R +FS++Q 
Sbjct: 81  EGLQYSLHGLAAGAPPQDSSSKSPEPSADESPDNDKETPGGGGDAGKKRKRRVLFSKAQT 140

Query: 240 FQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAA 299
           ++LE  F  +RYLS+ ER  LA+ + LT TQVKIWFQN R K KR  A   +   ++   
Sbjct: 141 YELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAE--KGMEVTPLP 198

Query: 300 AQRIVRVPILYHENS-----AAEGAAAAAAGAPVPVS----QPLLTFPHPVYYSHPVVSS 350
           + R V VP+L  +        A+  AAA   A +P S    Q L    +   YS      
Sbjct: 199 SPRRVAVPVLVRDGKPCHALKAQDLAAATFQAGIPFSAYSAQSLQHMQYNAQYSSASTPQ 258

Query: 351 VPLLRPV 357
            P   P+
Sbjct: 259 YPTAHPL 265


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.127    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,691,189
Number of Sequences: 37866
Number of extensions: 1236320
Number of successful extensions: 30119
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 967
Number of HSP's that attempted gapping in prelim test: 13081
Number of HSP's gapped (non-prelim): 10506
length of query: 357
length of database: 18,247,518
effective HSP length: 103
effective length of query: 254
effective length of database: 14,347,320
effective search space: 3644219280
effective search space used: 3644219280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.