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Search of human proteins with 157266269
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157266269 GATA like protein-1 [Homo sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157266269 GATA like protein-1 [Homo sapiens] 578 e-165
gi|224611701 GATA binding protein 2 isoform 2 [Homo sapiens] 53 2e-07
gi|224611699 GATA binding protein 2 isoform 1 [Homo sapiens] 52 4e-07
gi|20070352 GATA binding protein 2 isoform 1 [Homo sapiens] 52 4e-07
gi|4503925 GATA binding protein 1 [Homo sapiens] 49 4e-06
gi|50541959 GATA binding protein 3 isoform 1 [Homo sapiens] 48 8e-06
gi|40288197 GATA binding protein 6 [Homo sapiens] 47 2e-05
gi|33188461 GATA binding protein 4 [Homo sapiens] 46 3e-05
gi|4503929 GATA binding protein 3 isoform 2 [Homo sapiens] 46 4e-05
gi|17998698 GATA binding protein 5 [Homo sapiens] 45 7e-05
gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens] 43 3e-04
gi|239757609 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|239752116 PREDICTED: hypothetical protein XP_002348117 [Homo ... 39 0.005
gi|239746618 PREDICTED: hypothetical protein XP_002344233 [Homo ... 39 0.005
gi|148612829 RUN and TBC1 domain containing 1 isoform 2 [Homo sa... 37 0.024
gi|148612795 RUN and TBC1 domain containing 1 isoform 1 [Homo sa... 37 0.024
gi|157743252 pecanex-like 3 [Homo sapiens] 36 0.031
gi|21218438 GATA zinc finger domain containing 2B [Homo sapiens] 36 0.031
gi|239756083 PREDICTED: hypothetical protein [Homo sapiens] 35 0.069
gi|239750612 PREDICTED: hypothetical protein [Homo sapiens] 35 0.069
gi|239744919 PREDICTED: hypothetical protein XP_002343307 [Homo ... 35 0.069
gi|50083287 LIM homeobox 8 [Homo sapiens] 34 0.12
gi|95147559 ankyrin repeat domain 43 [Homo sapiens] 34 0.15
gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Ho... 33 0.20
gi|164519146 GATA zinc finger domain containing 2A [Homo sapiens] 33 0.26
gi|38373671 SEC24-related protein C [Homo sapiens] 33 0.26
gi|38373669 SEC24-related protein C [Homo sapiens] 33 0.26
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 32 0.77
gi|4502249 ArfGAP with SH3 domain, ankyrin repeat and PH domain ... 32 0.77
gi|50838795 metastasis associated 1 family, member 3 [Homo sapiens] 32 0.77
>gi|157266269 GATA like protein-1 [Homo sapiens]
Length = 271
Score = 578 bits (1491), Expect = e-165
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MTEPQVGCVACPRVHKEPAQVGTPWPAKPRSHPRKRDPTALLPRSLWPACQESVTALCFL 60
MTEPQVGCVACPRVHKEPAQVGTPWPAKPRSHPRKRDPTALLPRSLWPACQESVTALCFL
Sbjct: 1 MTEPQVGCVACPRVHKEPAQVGTPWPAKPRSHPRKRDPTALLPRSLWPACQESVTALCFL 60
Query: 61 QETVERLGQSPAQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPS 120
QETVERLGQSPAQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPS
Sbjct: 61 QETVERLGQSPAQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPS 120
Query: 121 APPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRSQESPADA 180
APPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRSQESPADA
Sbjct: 121 APPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRSQESPADA 180
Query: 181 VGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYKKYGTR 240
VGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYKKYGTR
Sbjct: 181 VGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYKKYGTR 240
Query: 241 CSSCWLVPRKNVQPKRLCGRCGVSLDPIQEG 271
CSSCWLVPRKNVQPKRLCGRCGVSLDPIQEG
Sbjct: 241 CSSCWLVPRKNVQPKRLCGRCGVSLDPIQEG 271
>gi|224611701 GATA binding protein 2 isoform 2 [Homo sapiens]
Length = 466
Score = 53.1 bits (126), Expect = 2e-07
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 162 IPTYS--LPCSSRSQES----PADAVGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTP 215
IPTY +P ++ S P +GGPA+ + A S E R C +C TP
Sbjct: 246 IPTYPSYVPAAAHDYSSGLFHPGGFLGGPASSFTPKQRSKARS-CSEGRECVNCGATATP 304
Query: 216 LWRDAEDGTPLCNACGIRYKKYG---------TRCSSCWLVPRKNVQPKRLCGRCGV 263
LWR G LCNACG+ +K G R ++ + R+N +C CG+
Sbjct: 305 LWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLTTTTTLWRRNANGDPVCNACGL 361
Score = 36.2 bits (82), Expect = 0.031
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 211 TQRTPLWRDAEDGTPLCNACGIRYK 235
T T LWR +G P+CNACG+ YK
Sbjct: 340 TTTTTLWRRNANGDPVCNACGLYYK 364
>gi|224611699 GATA binding protein 2 isoform 1 [Homo sapiens]
Length = 480
Score = 52.4 bits (124), Expect = 4e-07
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 30/131 (22%)
Query: 162 IPTYS--LPCSSRSQES----PADAVGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTP 215
IPTY +P ++ S P +GGPA+ + A S E R C +C TP
Sbjct: 246 IPTYPSYVPAAAHDYSSGLFHPGGFLGGPASSFTPKQRSKARS-CSEGRECVNCGATATP 304
Query: 216 LWRDAEDGTPLCNACGIRYK-------------------KYGTRCSSCWLVP----RKNV 252
LWR G LCNACG+ +K + GT C++C R+N
Sbjct: 305 LWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTCCANCQTTTTTLWRRNA 364
Query: 253 QPKRLCGRCGV 263
+C CG+
Sbjct: 365 NGDPVCNACGL 375
Score = 45.4 bits (106), Expect = 5e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 206 CASCRTQRTPLWRDAEDGTPLCNACGIRYK 235
CA+C+T T LWR +G P+CNACG+ YK
Sbjct: 349 CANCQTTTTTLWRRNANGDPVCNACGLYYK 378
>gi|20070352 GATA binding protein 2 isoform 1 [Homo sapiens]
Length = 480
Score = 52.4 bits (124), Expect = 4e-07
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 30/131 (22%)
Query: 162 IPTYS--LPCSSRSQES----PADAVGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTP 215
IPTY +P ++ S P +GGPA+ + A S E R C +C TP
Sbjct: 246 IPTYPSYVPAAAHDYSSGLFHPGGFLGGPASSFTPKQRSKARS-CSEGRECVNCGATATP 304
Query: 216 LWRDAEDGTPLCNACGIRYK-------------------KYGTRCSSCWLVP----RKNV 252
LWR G LCNACG+ +K + GT C++C R+N
Sbjct: 305 LWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTCCANCQTTTTTLWRRNA 364
Query: 253 QPKRLCGRCGV 263
+C CG+
Sbjct: 365 NGDPVCNACGL 375
Score = 45.4 bits (106), Expect = 5e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 206 CASCRTQRTPLWRDAEDGTPLCNACGIRYK 235
CA+C+T T LWR +G P+CNACG+ YK
Sbjct: 349 CANCQTTTTTLWRRNANGDPVCNACGLYYK 378
>gi|4503925 GATA binding protein 1 [Homo sapiens]
Length = 413
Score = 49.3 bits (116), Expect = 4e-06
Identities = 37/135 (27%), Positives = 50/135 (37%), Gaps = 39/135 (28%)
Query: 168 PCSSRSQESPADAVGGPAAH-----PGGTEAHSAGSEA-----------LEPRRCASCRT 211
P S P A GGP P G+ +SA + E R C +C
Sbjct: 150 PALPSSLPVPNSAYGGPDFSSTFFSPTGSPLNSAAYSSPKLRGTLPLPPCEARECVNCGA 209
Query: 212 QRTPLWRDAEDGTPLCNACGIRY-------------------KKYGTRCSSCWLVP---- 248
TPLWR G LCNACG+ + K+ GT+C++C
Sbjct: 210 TATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRLIVSKRAGTQCTNCQTTTTTLW 269
Query: 249 RKNVQPKRLCGRCGV 263
R+N +C CG+
Sbjct: 270 RRNASGDPVCNACGL 284
Score = 43.9 bits (102), Expect = 1e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 205 RCASCRTQRTPLWRDAEDGTPLCNACGIRYK 235
+C +C+T T LWR G P+CNACG+ YK
Sbjct: 257 QCTNCQTTTTTLWRRNASGDPVCNACGLYYK 287
>gi|50541959 GATA binding protein 3 isoform 1 [Homo sapiens]
Length = 444
Score = 48.1 bits (113), Expect = 8e-06
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 24/110 (21%)
Query: 177 PADAVGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYK- 235
P+ +GG G A S E R C +C TPLWR G LCNACG+ +K
Sbjct: 236 PSSLLGGSPTGFGCKSRPKARSST-EGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKM 294
Query: 236 ------------------KYGTRCSSCWLVP----RKNVQPKRLCGRCGV 263
+ GT C++C R+N +C CG+
Sbjct: 295 NGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGL 344
Score = 45.4 bits (106), Expect = 5e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 206 CASCRTQRTPLWRDAEDGTPLCNACGIRYK 235
CA+C+T T LWR +G P+CNACG+ YK
Sbjct: 318 CANCQTTTTTLWRRNANGDPVCNACGLYYK 347
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 47.0 bits (110), Expect = 2e-05
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 24/105 (22%)
Query: 182 GGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYK------ 235
G P P G A + E R C +C + +TPLWR G LCNACG+ K
Sbjct: 367 GAPLPVPRGPSADLL-EDLSESRECVNCGSIQTPLWRRDGTGHYLCNACGLYSKMNGLSR 425
Query: 236 -------------KYGTRCSSCWLVP----RKNVQPKRLCGRCGV 263
+ G C++C R+N + + +C CG+
Sbjct: 426 PLIKPQKRVPSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNACGL 470
Score = 44.7 bits (104), Expect = 9e-05
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 206 CASCRTQRTPLWRDAEDGTPLCNACGIRYKKYG 238
CA+C T T LWR +G P+CNACG+ K +G
Sbjct: 444 CANCHTTTTTLWRRNAEGEPVCNACGLYMKLHG 476
>gi|33188461 GATA binding protein 4 [Homo sapiens]
Length = 442
Score = 46.2 bits (108), Expect = 3e-05
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 23/85 (27%)
Query: 202 EPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYK-------------------KYGTRCS 242
E R C +C TPLWR G LCNACG+ +K + G C+
Sbjct: 213 EGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSASRRVGLSCA 272
Query: 243 SCWLVP----RKNVQPKRLCGRCGV 263
+C R+N + + +C CG+
Sbjct: 273 NCQTTTTTLWRRNAEGEPVCNACGL 297
Score = 45.1 bits (105), Expect = 7e-05
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 206 CASCRTQRTPLWRDAEDGTPLCNACGIRYKKYG 238
CA+C+T T LWR +G P+CNACG+ K +G
Sbjct: 271 CANCQTTTTTLWRRNAEGEPVCNACGLYMKLHG 303
>gi|4503929 GATA binding protein 3 isoform 2 [Homo sapiens]
Length = 443
Score = 45.8 bits (107), Expect = 4e-05
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 25/110 (22%)
Query: 177 PADAVGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYK- 235
P+ +GG G A S R C +C TPLWR G LCNACG+ +K
Sbjct: 236 PSSLLGGSPTGFGCKSRPKARSST--GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKM 293
Query: 236 ------------------KYGTRCSSCWLVP----RKNVQPKRLCGRCGV 263
+ GT C++C R+N +C CG+
Sbjct: 294 NGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGL 343
Score = 45.4 bits (106), Expect = 5e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 206 CASCRTQRTPLWRDAEDGTPLCNACGIRYK 235
CA+C+T T LWR +G P+CNACG+ YK
Sbjct: 317 CANCQTTTTTLWRRNANGDPVCNACGLYYK 346
>gi|17998698 GATA binding protein 5 [Homo sapiens]
Length = 397
Score = 45.1 bits (105), Expect = 7e-05
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 202 EPRRCASCRTQRTPLWRDAEDGTPLCNACGIRYKKYGTRCSSCWLVPRKNVQPKRLCGRC 261
E R C +C TPLWR G LCNACG+ +K G + + P+K + R G C
Sbjct: 185 EGRECVNCGALSTPLWRRDGTGHYLCNACGLYHKMNGV--NRPLVRPQKRLSSSRRAGLC 242
Score = 43.9 bits (102), Expect = 1e-04
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 206 CASCRTQRTPLWRDAEDGTPLCNACGIRYKKYG 238
C +C T T LWR +G P+CNACG+ K +G
Sbjct: 243 CTNCHTTNTTLWRRNSEGEPVCNACGLYMKLHG 275
>gi|90652851 zinc finger transcription factor TRPS1 [Homo sapiens]
Length = 1294
Score = 43.1 bits (100), Expect = 3e-04
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 131 LNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRSQESPADAVGG-----PA 185
L P GT+ + TL+ +++ P Y L ++ A A G P
Sbjct: 827 LTPVSGTQE-----QTKTLRDSPNVEAAHLARPIYGLAVETKGFLQGAPAGGEKSGALPQ 881
Query: 186 AHPGGTEAHSAG-SEALEPRR------CASCRTQRTPLWRDAEDGTPLCNACGIRYKKYG 238
+P E S S++L RR CA+C T +T LWR +G +CNACG+ K +
Sbjct: 882 QYPASGENKSKDESQSLLRRRRGSGVFCANCLTTKTSLWRKNANGGYVCNACGLYQKLHS 941
Query: 239 T 239
T
Sbjct: 942 T 942
>gi|239757609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 571
Score = 38.9 bits (89), Expect = 0.005
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 114 QPPGTPSAPPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRS 173
QPP P P + L P R + VDPG G + +P S+PCS
Sbjct: 196 QPPRGPEKPTSVHAEEALRPSRLHQAVDPGSRGQS------RSKCAAGLPAASMPCS--R 247
Query: 174 QESPADAVGGPAAHPGGTEAHSAGSEAL 201
PAD + P AH E G+ +L
Sbjct: 248 GHIPADQIPSPQAHARCLETGGKGAPSL 275
>gi|239752116 PREDICTED: hypothetical protein XP_002348117 [Homo
sapiens]
Length = 571
Score = 38.9 bits (89), Expect = 0.005
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 114 QPPGTPSAPPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRS 173
QPP P P + L P R + VDPG G + +P S+PCS
Sbjct: 196 QPPRGPEKPTSVHAEEALRPSRLHQAVDPGSRGQS------RSKCAAGLPAASMPCS--R 247
Query: 174 QESPADAVGGPAAHPGGTEAHSAGSEAL 201
PAD + P AH E G+ +L
Sbjct: 248 GHIPADQIPSPQAHARCLETGGKGAPSL 275
>gi|239746618 PREDICTED: hypothetical protein XP_002344233 [Homo
sapiens]
Length = 571
Score = 38.9 bits (89), Expect = 0.005
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 114 QPPGTPSAPPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSRS 173
QPP P P + L P R + VDPG G + +P S+PCS
Sbjct: 196 QPPRGPEKPTSVHAEEALRPSRLHQAVDPGSRGQS------RSKCAAGLPAASMPCS--R 247
Query: 174 QESPADAVGGPAAHPGGTEAHSAGSEAL 201
PAD + P AH E G+ +L
Sbjct: 248 GHIPADQIPSPQAHARCLETGGKGAPSL 275
>gi|148612829 RUN and TBC1 domain containing 1 isoform 2 [Homo
sapiens]
Length = 1006
Score = 36.6 bits (83), Expect = 0.024
Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 8/125 (6%)
Query: 113 LQPPGTPSAPPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIK---PDSSLQIIPTYSLPC 169
L+PP P P RP+ + GT PG V + ++ PDS L YS+
Sbjct: 663 LEPP-EPQDPEDSRPKPEQEAGPGT----PGTAVVEQQHSVEFDSPDSGLPSSRNYSVAS 717
Query: 170 SSRSQESPADAVGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNA 229
+S +VG GG E S A R +Q P + E G L
Sbjct: 718 GIQSSLDEGQSVGFEEEDGGGEEGSSGPGPAAHTLREPQDPSQEKPQAGELEAGEELAAV 777
Query: 230 CGIRY 234
C Y
Sbjct: 778 CAAAY 782
>gi|148612795 RUN and TBC1 domain containing 1 isoform 1 [Homo
sapiens]
Length = 1051
Score = 36.6 bits (83), Expect = 0.024
Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 8/125 (6%)
Query: 113 LQPPGTPSAPPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIK---PDSSLQIIPTYSLPC 169
L+PP P P RP+ + GT PG V + ++ PDS L YS+
Sbjct: 708 LEPP-EPQDPEDSRPKPEQEAGPGT----PGTAVVEQQHSVEFDSPDSGLPSSRNYSVAS 762
Query: 170 SSRSQESPADAVGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAEDGTPLCNA 229
+S +VG GG E S A R +Q P + E G L
Sbjct: 763 GIQSSLDEGQSVGFEEEDGGGEEGSSGPGPAAHTLREPQDPSQEKPQAGELEAGEELAAV 822
Query: 230 CGIRY 234
C Y
Sbjct: 823 CAAAY 827
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 36.2 bits (82), Expect = 0.031
Identities = 38/108 (35%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 114 QPPGTPSAPPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTYSLPCSSR- 172
QPP +PP R PR+ L G + EG ++ P SSL+ YS SS
Sbjct: 395 QPPLRRHSPPGRAPRRPLLEGGGFFEDEDTSEG----SELSPASSLRSQRRYSTDSSSST 450
Query: 173 ---SQESPADAVGGPAAH--PGGTEAHSAGSEALEPRRCASCRTQRTP 215
S ES A GGP P G E A+ P+R TQRTP
Sbjct: 451 SCYSPESSRGAAGGPRKRRAPHGAEE----GTAVPPKR--PYGTQRTP 492
>gi|21218438 GATA zinc finger domain containing 2B [Homo sapiens]
Length = 593
Score = 36.2 bits (82), Expect = 0.031
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 201 LEPRRCASCRTQRTPLWRDAEDGTPLCNAC 230
+EP CA CRT TP W+ ++G LC C
Sbjct: 415 VEPFVCAQCRTDFTPHWKQEKNGKILCEQC 444
>gi|239756083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 35.0 bits (79), Expect = 0.069
Identities = 39/140 (27%), Positives = 48/140 (34%), Gaps = 37/140 (26%)
Query: 18 PAQVGTPWPAKPRSHPRKR----------DPTALLPRSLWPACQESVTALCFLQETVERL 67
P PWP P S P + DPTA PR L L L
Sbjct: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVL--------RGLRLLAHRCPPS 54
Query: 68 GQSPAQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPSAPP-QRR 126
G++ P G R + ++R SQ R+ PP +P APP R
Sbjct: 55 GEAKLLARPGTG-----------------RPRRSPRSR-SQSVVRVAPPVSPRAPPLPLR 96
Query: 127 PRKQLNPCRGTERVDPGFEG 146
PR +L C G GF G
Sbjct: 97 PRLELQGCPGPGDTSGGFPG 116
>gi|239750612 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 35.0 bits (79), Expect = 0.069
Identities = 39/140 (27%), Positives = 48/140 (34%), Gaps = 37/140 (26%)
Query: 18 PAQVGTPWPAKPRSHPRKR----------DPTALLPRSLWPACQESVTALCFLQETVERL 67
P PWP P S P + DPTA PR L L L
Sbjct: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVL--------RGLRLLAHRCPPS 54
Query: 68 GQSPAQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPSAPP-QRR 126
G++ P G R + ++R SQ R+ PP +P APP R
Sbjct: 55 GEAKLLARPGTG-----------------RPRRSPRSR-SQSVVRVAPPVSPRAPPLPLR 96
Query: 127 PRKQLNPCRGTERVDPGFEG 146
PR +L C G GF G
Sbjct: 97 PRLELQGCPGPGDTSGGFPG 116
>gi|239744919 PREDICTED: hypothetical protein XP_002343307 [Homo
sapiens]
Length = 174
Score = 35.0 bits (79), Expect = 0.069
Identities = 39/140 (27%), Positives = 48/140 (34%), Gaps = 37/140 (26%)
Query: 18 PAQVGTPWPAKPRSHPRKR----------DPTALLPRSLWPACQESVTALCFLQETVERL 67
P PWP P S P + DPTA PR L L L
Sbjct: 3 PVGSSPPWPLAPASGPGRPPERKDLVAPPDPTAQSPRVL--------RGLRLLAHRCPPS 54
Query: 68 GQSPAQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPSAPP-QRR 126
G++ P G R + ++R SQ R+ PP +P APP R
Sbjct: 55 GEAKLLARPGTG-----------------RPRRSPRSR-SQSVVRVAPPVSPRAPPLPLR 96
Query: 127 PRKQLNPCRGTERVDPGFEG 146
PR +L C G GF G
Sbjct: 97 PRLELQGCPGPGDTSGGFPG 116
>gi|50083287 LIM homeobox 8 [Homo sapiens]
Length = 356
Score = 34.3 bits (77), Expect = 0.12
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 21/95 (22%)
Query: 169 CSSRSQESPADA----VGGPAAHPGGTEAHSAGSEALEPR-----------RCASCRTQR 213
CSS + SP+ + G PG +S G E ++ RC SC R
Sbjct: 47 CSSSAPLSPSSSPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCR 106
Query: 214 TPLWRDA----EDGTPLCNACGIRYKKYGTRCSSC 244
T L R +D C +++YGTRCS C
Sbjct: 107 TSLGRHTSCYIKDKDIFCKLD--YFRRYGTRCSRC 139
>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
Length = 549
Score = 33.9 bits (76), Expect = 0.15
Identities = 36/131 (27%), Positives = 49/131 (37%), Gaps = 19/131 (14%)
Query: 17 EPAQVGTPWPAKPRSHPRKRDPTALLPRSLWPACQESVTALCFLQETVERLGQ----SPA 72
EPA G P A S P + +LPRS A L + VE G +
Sbjct: 89 EPAPFGPPGAAAQPSKPT----STVLPRS---ASAPGAPPLVRVPRPVEPPGDLGLPTEP 141
Query: 73 QDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTRISQKGRRLQPPGTPSAPPQRRPRKQLN 132
QDTP GP +P + S D + + + P +APP R P + +
Sbjct: 142 QDTPG-GPASEPAQPPGER-------SADPPLPALELAQATERPSADAAPPPRAPSEAAS 193
Query: 133 PCRGTERVDPG 143
PC +PG
Sbjct: 194 PCSDPPDAEPG 204
>gi|4505195 mitogen-activated protein kinase kinase kinase 11 [Homo
sapiens]
Length = 847
Score = 33.5 bits (75), Expect = 0.20
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 16/100 (16%)
Query: 110 GRRLQPPG--------TPSAPPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQI 161
GR LQPPG +P+ PP P PC TE +LK P + +
Sbjct: 658 GRDLQPPGGPGRERGESPTTPPTPTPA----PC-PTEPPPSPLICFSLKTPDSPPTPAPL 712
Query: 162 IPTYSLPCSSRSQESP---ADAVGGPAAHPGGTEAHSAGS 198
+ +P RS +SP + GG + P GT + G+
Sbjct: 713 LLDLGIPVGQRSAKSPRREEEPRGGTVSPPPGTSRSAPGT 752
>gi|164519146 GATA zinc finger domain containing 2A [Homo sapiens]
Length = 633
Score = 33.1 bits (74), Expect = 0.26
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 202 EPRRCASCRTQRTPLWRDAEDGTPLCNAC 230
EP CA C+T T WR+ + G +C C
Sbjct: 413 EPYMCAQCKTDFTCRWREEKSGAIMCENC 441
>gi|38373671 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 33.1 bits (74), Expect = 0.26
Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 29/136 (21%)
Query: 117 GTPSAPPQRRPRKQLNP---------------CRGTERVDPGFEG-----VTLKFQIKPD 156
G+ PPQ P K+L+P RGTE G G VT F +K
Sbjct: 307 GSQPGPPQPLPPKRLDPDAIPSPIQVIEDDRNNRGTEPFVTGVRGQVPPLVTTNFLVKDQ 366
Query: 157 SSLQ----IIPTYSLPCSS---RSQESPADAVGGPAAH--PGGTEAHSAGSEALEPRRCA 207
+ +Y++PC+S + + P AV P A P + P RC
Sbjct: 367 GNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCN 426
Query: 208 SCRTQRTPLWRDAEDG 223
C+ P + E G
Sbjct: 427 RCKAYMCPFMQFIEGG 442
>gi|38373669 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 33.1 bits (74), Expect = 0.26
Identities = 35/136 (25%), Positives = 49/136 (36%), Gaps = 29/136 (21%)
Query: 117 GTPSAPPQRRPRKQLNP---------------CRGTERVDPGFEG-----VTLKFQIKPD 156
G+ PPQ P K+L+P RGTE G G VT F +K
Sbjct: 307 GSQPGPPQPLPPKRLDPDAIPSPIQVIEDDRNNRGTEPFVTGVRGQVPPLVTTNFLVKDQ 366
Query: 157 SSLQ----IIPTYSLPCSS---RSQESPADAVGGPAAH--PGGTEAHSAGSEALEPRRCA 207
+ +Y++PC+S + + P AV P A P + P RC
Sbjct: 367 GNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCN 426
Query: 208 SCRTQRTPLWRDAEDG 223
C+ P + E G
Sbjct: 427 RCKAYMCPFMQFIEGG 442
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 31.6 bits (70), Expect = 0.77
Identities = 73/296 (24%), Positives = 100/296 (33%), Gaps = 60/296 (20%)
Query: 4 PQVGCVACPRVHKEPAQVGTPWPAKPRSHPRKRDPTALLPR-------------SLWPAC 50
P+ CP V +P P PA P R P +LP + W A
Sbjct: 11 PRTPAPGCPEVAPQPEGTDAPGPAV--CSPTARAPPPILPAPQRPPTRAREWEGAAWAAG 68
Query: 51 QESVTALCFLQETVERLGQSP-----AQDTPVLGPCWDPMALGTQGRLLLDRDSKDTQTR 105
V A RLG+ P A P G P A G+ GR +
Sbjct: 69 ATGVGAALLALPGSRRLGRVPLTFREASPGPAPGA---PRARGSCGR----EPGPRRRRA 121
Query: 106 ISQKGRRLQPPGTPSAPPQRRPRKQLNPCRGTERVDPGFEGVTLKFQIKPDSSLQIIPTY 165
S G+R P+A + P +Q R R P G ++ + P + +
Sbjct: 122 PSSAGKR------PAAAARAAPPRQ----RSLARCLPRSVGSCVRPSVGPSLPRRHCRRH 171
Query: 166 SLPCSSRSQESPADAVGGP---AAHPGGTEAHSAGSEALE----PRRCASCRTQRTPLWR 218
C R + P P +A P A AGS A PRRC R +R+P
Sbjct: 172 -CRCHCRRRPLPKPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRR-RAERSP--- 226
Query: 219 DAEDGTPLCNACGIRYKKYGTRCSSCWLVPRKNVQPKRLCGR---CGVSLDPIQEG 271
A G PL + + G R R+ + +R+ GR C + PI G
Sbjct: 227 -AGHGLPLPRSLSRGGEVVGAR-------RRRGGEERRVRGRRQGCALGSPPIPAG 274
>gi|4502249 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
isoform a [Homo sapiens]
Length = 1006
Score = 31.6 bits (70), Expect = 0.77
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 26/140 (18%)
Query: 22 GTPWPAKPRSHPRKRDPTALLPRSLWPACQESVTALCFLQETVERLG---QSPAQDTPVL 78
G+P PA+P + P L PR++ S + +V G Q + D P +
Sbjct: 769 GSPPPAQPAA-PSTTSAPPLPPRNVGKVQTASSANTLWKTNSVSVDGGSRQRSSSDPPAV 827
Query: 79 GPCWDPMALGTQGRLL----------------LDRDSKDTQTRISQKGRRLQPPGTPSAP 122
P P+ + + L L + SK ISQ ++PP P P
Sbjct: 828 HPPLPPLRVTSTNPLTPTPPPPVAKTPSVMEALSQPSKPAPPGISQ----IRPPPLPPQP 883
Query: 123 PQRRPRKQLNPCRGTERVDP 142
P R P+K+ P G ++ P
Sbjct: 884 PSRLPQKK--PAPGADKSTP 901
>gi|50838795 metastasis associated 1 family, member 3 [Homo sapiens]
Length = 515
Score = 31.6 bits (70), Expect = 0.77
Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 162 IPTYSLPCSSRSQESPADAVGGPAAHPGGTEAHSAGSEALEPRRCASCRTQRTPLWRDAE 221
IPTYS P ++ S G P A G L R C SC ++ W
Sbjct: 339 IPTYSKPNPNQISTSN----GKPGAVNGAVGTTFQPQNPLLGRACESCYATQSHQWYSW- 393
Query: 222 DGTP-----LCNACGIRYKKYG 238
G P LC C + +KKYG
Sbjct: 394 -GPPNMQCRLCAICWLYWKKYG 414
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,916,369
Number of Sequences: 37866
Number of extensions: 777126
Number of successful extensions: 3883
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 3774
Number of HSP's gapped (non-prelim): 216
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.