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Search of human proteins with 156523264
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156523264 hypothetical protein LOC112752 isoform 2 [Homo
sapiens]
(208 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156523264 hypothetical protein LOC112752 isoform 2 [Homo sapi... 418 e-117
gi|156523262 hypothetical protein LOC112752 isoform 1 [Homo sapi... 357 5e-99
gi|41281907 StAR-related lipid transfer (START) domain containin... 33 0.17
gi|16445031 StAR-related lipid transfer (START) domain containin... 33 0.17
gi|41281898 StAR-related lipid transfer (START) domain containin... 33 0.17
gi|5729862 stem-loop (histone) binding protein [Homo sapiens] 32 0.29
gi|81295809 pericentrin [Homo sapiens] 32 0.50
gi|40254949 erythrocyte membrane protein band 4.1 like 5 [Homo s... 30 1.5
gi|215820652 StAR-related lipid transfer (START) domain containi... 30 1.9
gi|215820650 StAR-related lipid transfer (START) domain containi... 30 1.9
gi|31543659 StAR-related lipid transfer (START) domain containin... 30 1.9
gi|24497497 solute carrier family 22 member 7 isoform a [Homo sa... 29 2.5
gi|30794372 polybromo 1 isoform 1 [Homo sapiens] 29 2.5
gi|41281917 polybromo 1 isoform 4 [Homo sapiens] 29 2.5
gi|120587019 zinc finger protein 318 [Homo sapiens] 28 4.2
gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 28 5.5
gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... 28 5.5
gi|4758422 glucosaminyl (N-acetyl) transferase 3, mucin type [Ho... 28 7.2
gi|239747068 PREDICTED: hypothetical protein XP_002344271 [Homo ... 28 7.2
gi|239747066 PREDICTED: hypothetical protein XP_002344270 [Homo ... 28 7.2
gi|239747064 PREDICTED: hypothetical protein XP_002344269 [Homo ... 28 7.2
gi|239747060 PREDICTED: hypothetical protein XP_002344267 [Homo ... 28 7.2
gi|239747056 PREDICTED: hypothetical protein XP_002344265 [Homo ... 28 7.2
gi|239747050 PREDICTED: hypothetical protein XP_002344262 [Homo ... 28 7.2
gi|239747048 PREDICTED: hypothetical protein XP_002344261 [Homo ... 28 7.2
gi|239747046 PREDICTED: hypothetical protein XP_002344260 [Homo ... 28 7.2
gi|239747044 PREDICTED: hypothetical protein XP_002344259 [Homo ... 28 7.2
gi|239747038 PREDICTED: hypothetical protein XP_002344256 [Homo ... 28 7.2
gi|45827729 scribble isoform b [Homo sapiens] 28 7.2
gi|45827731 scribble isoform a [Homo sapiens] 28 7.2
>gi|156523264 hypothetical protein LOC112752 isoform 2 [Homo
sapiens]
Length = 208
Score = 418 bits (1075), Expect = e-117
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ 60
MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
Sbjct: 1 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ 60
Query: 61 GGWAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAA 120
GGWAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAA
Sbjct: 61 GGWAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAA 120
Query: 121 PPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLF 180
PPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLF
Sbjct: 121 PPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLF 180
Query: 181 TEVSSEVLTEWDPLQTEKEDPAGQARHT 208
TEVSSEVLTEWDPLQTEKEDPAGQARHT
Sbjct: 181 TEVSSEVLTEWDPLQTEKEDPAGQARHT 208
>gi|156523262 hypothetical protein LOC112752 isoform 1 [Homo
sapiens]
Length = 213
Score = 357 bits (915), Expect = 5e-99
Identities = 184/214 (85%), Positives = 189/214 (88%), Gaps = 7/214 (3%)
Query: 1 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ 60
MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ
Sbjct: 1 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQ 60
Query: 61 GGWAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYG------GDIPIIPDLEEVQEEDF 114
GGWAGDSVKAS + +++ D + D G DIPIIPDLEEVQEEDF
Sbjct: 61 GGWAGDSVKASNGTQTGKQQL-DLNACYHKTHHRDLGLASLEEADIPIIPDLEEVQEEDF 119
Query: 115 VLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGW 174
VLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGW
Sbjct: 120 VLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTLDGEIDLKLLTKVLAPEHEVREDDVGW 179
Query: 175 DWDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT 208
DWDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT
Sbjct: 180 DWDHLFTEVSSEVLTEWDPLQTEKEDPAGQARHT 213
>gi|41281907 StAR-related lipid transfer (START) domain containing
13 isoform beta [Homo sapiens]
Length = 1105
Score = 33.1 bits (74), Expect = 0.17
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 116 LQVAAPPSIQIKRVMTYRDL-DNDLMKYSAIQTLDGEIDL 154
++V APPS+ + RV+ R L D D +++ ++TLD + ++
Sbjct: 949 VEVEAPPSVVLNRVLRERHLWDEDFVQWKVVETLDRQTEI 988
>gi|16445031 StAR-related lipid transfer (START) domain containing
13 isoform gamma [Homo sapiens]
Length = 995
Score = 33.1 bits (74), Expect = 0.17
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 116 LQVAAPPSIQIKRVMTYRDL-DNDLMKYSAIQTLDGEIDL 154
++V APPS+ + RV+ R L D D +++ ++TLD + ++
Sbjct: 839 VEVEAPPSVVLNRVLRERHLWDEDFVQWKVVETLDRQTEI 878
>gi|41281898 StAR-related lipid transfer (START) domain containing
13 isoform alpha [Homo sapiens]
Length = 1113
Score = 33.1 bits (74), Expect = 0.17
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 116 LQVAAPPSIQIKRVMTYRDL-DNDLMKYSAIQTLDGEIDL 154
++V APPS+ + RV+ R L D D +++ ++TLD + ++
Sbjct: 957 VEVEAPPSVVLNRVLRERHLWDEDFVQWKVVETLDRQTEI 996
>gi|5729862 stem-loop (histone) binding protein [Homo sapiens]
Length = 270
Score = 32.3 bits (72), Expect = 0.29
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 13/110 (11%)
Query: 12 RYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQGGWAGDSVKAS 71
R+SL R GRR + E A+ H + + T T PR R WA +V+
Sbjct: 26 RWSLGRKRRADGRRWRPEDAEEAEHRGAERRPESFT--TPEGPKPRSRCSDWA-SAVEED 82
Query: 72 KFRRKASEE---------IEDF-RLRPQSLNGSDYGGDIPIIPDLEEVQE 111
+ R + ++E I DF R R S SD + +P E E
Sbjct: 83 EMRTRVNKEMARYKRKLLINDFGRERKSSSGSSDSKESMSTVPADFETDE 132
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 31.6 bits (70), Expect = 0.50
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 63 WAGDSVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQ 117
W GD ++ + + +E++ L+P+ L+GSD GG ++ LE++ E LQ
Sbjct: 2449 WRGDLLQVVQEAFEKEQEMQGVELQPR-LSGSDLGGHSSLLERLEKIIREQGDLQ 2502
>gi|40254949 erythrocyte membrane protein band 4.1 like 5 [Homo
sapiens]
Length = 733
Score = 30.0 bits (66), Expect = 1.5
Identities = 43/204 (21%), Positives = 87/204 (42%), Gaps = 21/204 (10%)
Query: 15 LATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQGGWAGDSVKASKFR 74
L+ R +GRR+ ++ A+ E + ++ + S + CR G V +
Sbjct: 2 LSFFRRTLGRRSMRKHAEKERLREAQRAATHIPAAGDSKSIITCRVSLLDGTDVSVDLPK 61
Query: 75 RKASEEIEDFRLRPQSLNGSDYGG-----DIPIIPDLEEVQEEDFVLQVAAPPSIQIKRV 129
+ +E+ D + L SDY G + L+ + +++ +P + + RV
Sbjct: 62 KAKGQELFDQIMYHLDLIESDYFGLRFMDSAQVAHWLDGTKSIKKQVKIGSPYCLHL-RV 120
Query: 130 MTY----RDLDNDLMKYSAI-----QTLDGEIDLKLLTKVLAPEHEVREDDVGWDWDHLF 180
Y +L +L +Y + L G++D T V + + + ++G D+
Sbjct: 121 KFYSSEPNNLREELTRYLFVLQLKQDILSGKLDCPFDTAVQLAAYNL-QAELG---DYDL 176
Query: 181 TEVSSEVLTEWD--PLQTEKEDPA 202
E S E+++E+ P+QTE+ + A
Sbjct: 177 AEHSPELVSEFRFVPIQTEEMELA 200
>gi|215820652 StAR-related lipid transfer (START) domain containing
8 isoform b [Homo sapiens]
Length = 1023
Score = 29.6 bits (65), Expect = 1.9
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 117 QVAAPPSIQIKRVMTYRDL-DNDLMKYSAIQTLDGEIDL-KLLTKVLAPEHEVRE 169
+VAAPP++ + RV+ R L D DL++ ++ L ++L +T +AP H R+
Sbjct: 868 EVAAPPAVVLHRVLRERALWDEDLLRAQVLEALMPGVELYHYVTDSMAP-HPCRD 921
>gi|215820650 StAR-related lipid transfer (START) domain containing 8
isoform a [Homo sapiens]
Length = 1103
Score = 29.6 bits (65), Expect = 1.9
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 117 QVAAPPSIQIKRVMTYRDL-DNDLMKYSAIQTLDGEIDL-KLLTKVLAPEHEVRE 169
+VAAPP++ + RV+ R L D DL++ ++ L ++L +T +AP H R+
Sbjct: 948 EVAAPPAVVLHRVLRERALWDEDLLRAQVLEALMPGVELYHYVTDSMAP-HPCRD 1001
>gi|31543659 StAR-related lipid transfer (START) domain containing 8
isoform b [Homo sapiens]
Length = 1023
Score = 29.6 bits (65), Expect = 1.9
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 117 QVAAPPSIQIKRVMTYRDL-DNDLMKYSAIQTLDGEIDL-KLLTKVLAPEHEVRE 169
+VAAPP++ + RV+ R L D DL++ ++ L ++L +T +AP H R+
Sbjct: 868 EVAAPPAVVLHRVLRERALWDEDLLRAQVLEALMPGVELYHYVTDSMAP-HPCRD 921
>gi|24497497 solute carrier family 22 member 7 isoform a [Homo
sapiens]
Length = 546
Score = 29.3 bits (64), Expect = 2.5
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 173 GWDWDHLFTEVSSEVLTEWDPLQTEK 198
GW++DH +E SS + TEWD + +K
Sbjct: 116 GWEYDH--SEFSSTIATEWDLVCEQK 139
>gi|30794372 polybromo 1 isoform 1 [Homo sapiens]
Length = 1602
Score = 29.3 bits (64), Expect = 2.5
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 97 GGDIPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTL-------- 148
GGD D+EE+ EED +V PPS+ ++ T + DLM Y+ Q+
Sbjct: 1289 GGD----DDIEEMGEEDS--EVIEPPSLP--QLQTPLASELDLMPYTPPQSTPKSAKGSA 1340
Query: 149 --DGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEWDPLQTEKE 199
+G ++ + E+R D+ F E+S V TEW L+T K+
Sbjct: 1341 KKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKK 1393
>gi|41281917 polybromo 1 isoform 4 [Homo sapiens]
Length = 1582
Score = 29.3 bits (64), Expect = 2.5
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 97 GGDIPIIPDLEEVQEEDFVLQVAAPPSIQIKRVMTYRDLDNDLMKYSAIQTL-------- 148
GGD D+EE+ EED +V PPS+ ++ T + DLM Y+ Q+
Sbjct: 1321 GGD----DDIEEMGEEDS--EVIEPPSLP--QLQTPLASELDLMPYTPPQSTPKSAKGSA 1372
Query: 149 --DGEIDLKLLTKVLAPEHEVREDDVGWDWDHLFTEVSSEVLTEWDPLQTEKE 199
+G ++ + E+R D+ F E+S V TEW L+T K+
Sbjct: 1373 KKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWRNLETAKK 1425
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 28.5 bits (62), Expect = 4.2
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 74 RRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEV---QEEDFVLQVAAPPSIQIKRVM 130
RRK EE E R Q L G D GG IP L V E + L S+ K+ +
Sbjct: 322 RRKREEEEERSRSLSQELVGVDGGGTGCSIPGLSGVLTASEPGYSLHRPEEVSVMPKKSI 381
Query: 131 TYRDLDNDLMKYS 143
+ ++ D+M+ S
Sbjct: 382 LKKRIEVDIMEPS 394
>gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 2 [Homo sapiens]
Length = 2472
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 65 GDSVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAA 120
G + + +F R A E E + Q+LN +YG D+ + L+ + E F +AA
Sbjct: 1230 GSAHEVQRFHRDADETKEWIEEKNQALNTDNYGHDLASVQALQR-KHEGFERDLAA 1284
>gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
isoform 1 [Homo sapiens]
Length = 2477
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 65 GDSVKASKFRRKASEEIEDFRLRPQSLNGSDYGGDIPIIPDLEEVQEEDFVLQVAA 120
G + + +F R A E E + Q+LN +YG D+ + L+ + E F +AA
Sbjct: 1230 GSAHEVQRFHRDADETKEWIEEKNQALNTDNYGHDLASVQALQR-KHEGFERDLAA 1284
>gi|4758422 glucosaminyl (N-acetyl) transferase 3, mucin type [Homo
sapiens]
Length = 438
Score = 27.7 bits (60), Expect = 7.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 1 MEDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNS 42
MEDLL +Y L T ++ E QA LNG+NS
Sbjct: 210 MEDLLQSSVPWKYFLNTCGTDFPIKSNAEMVQALKMLNGRNS 251
>gi|239747068 PREDICTED: hypothetical protein XP_002344271 [Homo
sapiens]
Length = 97
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 170 DDVGWDWDHLFTEVSSEVLTEWDPLQ 195
D +GWDW+ ++ + TEW+ L+
Sbjct: 20 DGIGWDWNEMYWKGLEFHETEWNELE 45
>gi|239747066 PREDICTED: hypothetical protein XP_002344270 [Homo
sapiens]
Length = 97
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 170 DDVGWDWDHLFTEVSSEVLTEWDPLQ 195
D +GWDW+ ++ + TEW+ L+
Sbjct: 20 DGIGWDWNEMYWKGLEFHETEWNELE 45
>gi|239747064 PREDICTED: hypothetical protein XP_002344269 [Homo
sapiens]
Length = 97
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 170 DDVGWDWDHLFTEVSSEVLTEWDPLQ 195
D +GWDW+ ++ + TEW+ L+
Sbjct: 20 DGIGWDWNEMYWKGLEFHETEWNELE 45
>gi|239747060 PREDICTED: hypothetical protein XP_002344267 [Homo
sapiens]
Length = 97
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 170 DDVGWDWDHLFTEVSSEVLTEWDPLQ 195
D +GWDW+ ++ + TEW+ L+
Sbjct: 20 DGIGWDWNEMYWKGLEFHETEWNELE 45
>gi|239747056 PREDICTED: hypothetical protein XP_002344265 [Homo
sapiens]
Length = 97
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 170 DDVGWDWDHLFTEVSSEVLTEWDPLQ 195
D +GWDW+ ++ + TEW+ L+
Sbjct: 20 DGIGWDWNEMYWKGLEFHETEWNELE 45
>gi|239747050 PREDICTED: hypothetical protein XP_002344262 [Homo
sapiens]
Length = 97
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 170 DDVGWDWDHLFTEVSSEVLTEWDPLQ 195
D +GWDW+ ++ + TEW+ L+
Sbjct: 20 DGIGWDWNEMYWKGLEFHETEWNELE 45
>gi|239747048 PREDICTED: hypothetical protein XP_002344261 [Homo
sapiens]
Length = 97
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 170 DDVGWDWDHLFTEVSSEVLTEWDPLQ 195
D +GWDW+ ++ + TEW+ L+
Sbjct: 20 DGIGWDWNEMYWKGLEFDETEWNELE 45
>gi|239747046 PREDICTED: hypothetical protein XP_002344260 [Homo
sapiens]
Length = 97
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 170 DDVGWDWDHLFTEVSSEVLTEWDPLQ 195
D +GWDW+ ++ + TEW+ L+
Sbjct: 20 DGIGWDWNEMYWKGLEFHETEWNELE 45
>gi|239747044 PREDICTED: hypothetical protein XP_002344259 [Homo
sapiens]
Length = 97
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 170 DDVGWDWDHLFTEVSSEVLTEWDPLQ 195
D +GWDW+ ++ + TEW+ L+
Sbjct: 20 DGIGWDWNEMYWKGLEFHETEWNELE 45
>gi|239747038 PREDICTED: hypothetical protein XP_002344256 [Homo
sapiens]
Length = 97
Score = 27.7 bits (60), Expect = 7.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 170 DDVGWDWDHLFTEVSSEVLTEWDPLQ 195
D +GWDW+ ++ + TEW+ L+
Sbjct: 20 DGIGWDWNEMYWKGLEFHETEWNELE 45
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 27.7 bits (60), Expect = 7.2
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 2 EDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQG 61
+DL + EE L RA+M R A + A+A L L GET + Q
Sbjct: 1383 DDLRKMQEEEARKLQQKRAQMLREAAEAGAEAR---------LALDGETLGEEEQEDEQP 1433
Query: 62 GWAGDS 67
WA S
Sbjct: 1434 PWASPS 1439
>gi|45827731 scribble isoform a [Homo sapiens]
Length = 1655
Score = 27.7 bits (60), Expect = 7.2
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 2 EDLLDLDEELRYSLATSRAKMGRRAQQESAQAENHLNGKNSSLTLTGETSSAKLPRCRQG 61
+DL + EE L RA+M R A + A+A L L GET + Q
Sbjct: 1383 DDLRKMQEEEARKLQQKRAQMLREAAEAGAEAR---------LALDGETLGEEEQEDEQP 1433
Query: 62 GWAGDS 67
WA S
Sbjct: 1434 PWASPS 1439
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,575,613
Number of Sequences: 37866
Number of extensions: 305014
Number of successful extensions: 693
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 40
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.