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Search of human proteins with 156104906
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156104906 myogenic factor 5 [Homo sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156104906 myogenic factor 5 [Homo sapiens] 526 e-150
gi|23111009 myogenic differentiation 1 [Homo sapiens] 224 7e-59
gi|4505299 myogenic factor 6 [Homo sapiens] 146 1e-35
gi|18765727 myogenin [Homo sapiens] 134 1e-31
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 50 2e-06
gi|68989258 neurogenin 3 [Homo sapiens] 48 7e-06
gi|116517330 factor in the germline alpha [Homo sapiens] 48 7e-06
gi|23097242 nephew of atonal 3 [Homo sapiens] 48 9e-06
gi|4507741 twist [Homo sapiens] 47 2e-05
gi|17981708 twist homolog 2 [Homo sapiens] 47 2e-05
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 46 3e-05
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 45 5e-05
gi|21553337 atonal homolog 7 [Homo sapiens] 45 5e-05
gi|55743094 achaete-scute complex homolog 1 [Homo sapiens] 45 6e-05
gi|206597481 achaete-scute complex-like 4 [Homo sapiens] 44 1e-04
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 44 1e-04
gi|121114306 neurogenic differentiation 1 [Homo sapiens] 44 1e-04
gi|27475985 neurogenic differentiation 6 [Homo sapiens] 44 1e-04
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 44 1e-04
gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 43 2e-04
gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 43 2e-04
gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo sa... 43 2e-04
gi|161484632 nescient helix loop helix 2 [Homo sapiens] 43 2e-04
gi|5031945 nescient helix loop helix 2 [Homo sapiens] 43 2e-04
gi|239756681 PREDICTED: basic helix-loop-helix family, member a9... 43 3e-04
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 43 3e-04
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 43 3e-04
gi|4885075 atonal homolog 1 [Homo sapiens] 43 3e-04
gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens] 43 3e-04
gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens] 43 3e-04
>gi|156104906 myogenic factor 5 [Homo sapiens]
Length = 255
Score = 526 bits (1356), Expect = e-150
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MDVMDGCQFSPSEYFYDGSCIPSPEGEFGDEFVPRVAAFGAHKAELQGSDEDEHVRAPTG 60
MDVMDGCQFSPSEYFYDGSCIPSPEGEFGDEFVPRVAAFGAHKAELQGSDEDEHVRAPTG
Sbjct: 1 MDVMDGCQFSPSEYFYDGSCIPSPEGEFGDEFVPRVAAFGAHKAELQGSDEDEHVRAPTG 60
Query: 61 HHQAGHCLMWACKACKRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTTNPNQRLPK 120
HHQAGHCLMWACKACKRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTTNPNQRLPK
Sbjct: 61 HHQAGHCLMWACKACKRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTTNPNQRLPK 120
Query: 121 VEILRNAIRYIESLQELLREQVENYYSLPGQSCSEPTSPTSNCSDGMPECNSPVWSRKSS 180
VEILRNAIRYIESLQELLREQVENYYSLPGQSCSEPTSPTSNCSDGMPECNSPVWSRKSS
Sbjct: 121 VEILRNAIRYIESLQELLREQVENYYSLPGQSCSEPTSPTSNCSDGMPECNSPVWSRKSS 180
Query: 181 TFDSIYCPDVSNVYATDKNSLSSLDCLSNIVDRITSSEQPGLPLQDLASLSPVASTDSQP 240
TFDSIYCPDVSNVYATDKNSLSSLDCLSNIVDRITSSEQPGLPLQDLASLSPVASTDSQP
Sbjct: 181 TFDSIYCPDVSNVYATDKNSLSSLDCLSNIVDRITSSEQPGLPLQDLASLSPVASTDSQP 240
Query: 241 ATPGASSSRLIYHVL 255
ATPGASSSRLIYHVL
Sbjct: 241 ATPGASSSRLIYHVL 255
>gi|23111009 myogenic differentiation 1 [Homo sapiens]
Length = 320
Score = 224 bits (570), Expect = 7e-59
Identities = 132/276 (47%), Positives = 169/276 (61%), Gaps = 37/276 (13%)
Query: 7 CQFSPSEYFYDGSCIPSPEGEFGDEFVPRVAAFGA--------------HKAELQGSDED 52
C F+ ++ FYD C SP+ F ++ PR+ GA H A G+ ED
Sbjct: 21 CSFATTDDFYDDPCFDSPDLRFFEDLDPRLMHVGALLKPEEHSHFPAAVHPAP--GARED 78
Query: 53 EHVRAPTGHHQAGHCLMWACKACKRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTT 112
EHVRAP+GHHQAG CL+WACKACKRK+T DRRKAATMRERRRL KVN+AFETLKRCT++
Sbjct: 79 EHVRAPSGHHQAGRCLLWACKACKRKTTNADRRKAATMRERRRLSKVNEAFETLKRCTSS 138
Query: 113 NPNQRLPKVEILRNAIRYIESLQELLREQ------VENYYSLPG-----------QSCSE 155
NPNQRLPKVEILRNAIRYIE LQ LLR+Q + PG S+
Sbjct: 139 NPNQRLPKVEILRNAIRYIEGLQALLRDQDAAPPGAAAAFYAPGPLPPGRGGEHYSGDSD 198
Query: 156 PTSPTSNCSDGMPECNS-PVWSRKSSTFDSIYCPDVSNVYATDKN-SLSSLDCLSNIVDR 213
+SP SNCSDGM + + P +R+ + ++ Y + + K+ ++SSLDCLS+IV+R
Sbjct: 199 ASSPRSNCSDGMMDYSGPPSGARRRNCYEGAYYNEAPSEPRPGKSAAVSSLDCLSSIVER 258
Query: 214 IT--SSEQPGLPLQDLASLSPVASTDSQPATPGASS 247
I+ S P L L D+ S SP ++ + G SS
Sbjct: 259 ISTESPAAPALLLADVPSESPPRRQEAAAPSEGESS 294
>gi|4505299 myogenic factor 6 [Homo sapiens]
Length = 242
Score = 146 bits (369), Expect = 1e-35
Identities = 90/180 (50%), Positives = 108/180 (60%), Gaps = 9/180 (5%)
Query: 48 GSDE--DEHVRAPTG---HHQAGHCLMWACKACKRKSTTMDRRKAATMRERRRLKKVNQA 102
GSD +EHV AP G H G CL+WACK CKRKS DRRKAAT+RERRRLKK+N+A
Sbjct: 53 GSDSSGEEHVLAPPGLQPPHCPGQCLIWACKTCKRKSAPTDRRKAATLRERRRLKKINEA 112
Query: 103 FETLKRCTTTNPNQRLPKVEILRNAIRYIESLQELLR--EQVENYYSLPGQSCS-EPTSP 159
FE LKR T NPNQRLPKVEILR+AI YIE LQ+LL +Q E L S P
Sbjct: 113 FEALKRRTVANPNQRLPKVEILRSAISYIERLQDLLHRLDQQEKMQELGVDPFSYRPKQE 172
Query: 160 TSNCSDGMPECNSPVWSRKSSTFDSIYCPDVSNVYATDKNSLSSLDCLSNIVDRITSSEQ 219
+D + C+S W S + + D ++ SSL CLS+IVD I+S E+
Sbjct: 173 NLEGADFLRTCSSQ-WPSVSDHSRGLVITAKEGGASIDSSASSSLRCLSSIVDSISSEER 231
>gi|18765727 myogenin [Homo sapiens]
Length = 224
Score = 134 bits (336), Expect = 1e-31
Identities = 94/217 (43%), Positives = 115/217 (52%), Gaps = 21/217 (9%)
Query: 9 FSPSEYFYDGSCIPSPEGEFGDEFVP-RVAAF---GAHKAELQGSDED----EHVRAPTG 60
+ S YFY P G+ ++P + F G + EL S E E T
Sbjct: 4 YETSPYFYQ-----EPRFYDGENYLPVHLQGFEPPGYERTELTLSPEAPGPLEDKGLGTP 58
Query: 61 HHQAGHCLMWACKACKRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTTNPNQRLPK 120
H G CL WACK CKRKS ++DRR+AAT+RE+RRLKKVN+AFE LKR T NPNQRLPK
Sbjct: 59 EHCPGQCLPWACKVCKRKSVSVDRRRAATLREKRRLKKVNEAFEALKRSTLLNPNQRLPK 118
Query: 121 VEILRNAIRYIESLQELLR--EQVENYYSLPGQSCSEPTSPTSNCSDGMPECNSPVWSRK 178
VEILR+AI+YIE LQ LL Q E G +P P S CS C SP W
Sbjct: 119 VEILRSAIQYIERLQALLSSLNQEERDLRYRGGGGPQPGVP-SECSSHSASC-SPEW--- 173
Query: 179 SSTFDSIYCPDVSNVYATDKNSLSSLDCLSNIVDRIT 215
S + P ++ D +L L++IVD IT
Sbjct: 174 GSALEFSANPG-DHLLTADPTDAHNLHSLTSIVDSIT 209
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 85 RKAATMRERRRLKKVNQAFETLKRCTTTNP-NQRLPKVEILRNAIRYIESLQELLR 139
R+AA +RERRR++ +N AFE L+ T P +RL KV+ LR AI YI L EL++
Sbjct: 165 RQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSELVQ 220
>gi|68989258 neurogenin 3 [Homo sapiens]
Length = 214
Score = 48.1 bits (113), Expect = 7e-06
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 84 RRKAATMRERRRLKKVNQAFETLKRCTTTNPNQ-RLPKVEILRNAIRYIESLQELLREQV 142
RRK A RER R+ +N A + L+ T P+ +L K+E LR A YI +L + LR
Sbjct: 84 RRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQTLRIAD 143
Query: 143 ENYYSL--PGQSCSEPTSPTSNCSD 165
+ Y+L P C E SP + D
Sbjct: 144 HSLYALEPPAPHCGELGSPGGSPGD 168
>gi|116517330 factor in the germline alpha [Homo sapiens]
Length = 219
Score = 48.1 bits (113), Expect = 7e-06
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 82 MDRRKAATMRERRRLKKVNQAFETLKRCTTTNPNQRLP-KVEILRNAIRYIESLQELLRE 140
++RR+ A +ER R+K +N+ F LK P R P KV+IL+ A YI+ L +LL
Sbjct: 64 LERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEG 123
Query: 141 QVENYYSLPGQSCSEPTSPTSNCS 164
++ P + S S+ S
Sbjct: 124 AKDSKKQDPDEQSYSNNSSESHTS 147
>gi|23097242 nephew of atonal 3 [Homo sapiens]
Length = 166
Score = 47.8 bits (112), Expect = 9e-06
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 7 CQFSPSEYFYDGSCIPSPEGEFGDEFVPRVAAFGAHKAELQGSDEDEHVRAPTGHHQAGH 66
C F+P G + P + R+A F E + + D+ + G
Sbjct: 31 CDFAP------GVSLGDPALALREGRPRRMARFEEGDPEEEECEVDQGDGEEEEEEERGR 84
Query: 67 CLMWACKACKRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTTNP-NQRLPKVEILR 125
+ + +++ T +R+AA +RER+R+ +N+AF+ L+R T +RL ++E LR
Sbjct: 85 GVSLLGRPKRKRVITYAQRQAANIRERKRMFNLNEAFDQLRRKVPTFAYEKRLSRIETLR 144
Query: 126 NAIRYIESLQELL 138
AI YI + ELL
Sbjct: 145 LAIVYISFMTELL 157
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 46.6 bits (109), Expect = 2e-05
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 84 RRKAATMRERRRLKKVNQAFETLKRCTTTNPNQRLPKVEILRNAIRYIESLQELLR 139
+R A +RER+R + +N+AF L++ T P+ +L K++ L+ A RYI+ L ++L+
Sbjct: 109 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 164
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 46.6 bits (109), Expect = 2e-05
Identities = 22/62 (35%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 84 RRKAATMRERRRLKKVNQAFETLKRCTTTNPNQRLPKVEILRNAIRYIESLQELLR-EQV 142
+R A +RER+R + +N+AF L++ T P+ +L K++ L+ A RYI+ L ++L+ +++
Sbjct: 67 QRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEM 126
Query: 143 EN 144
+N
Sbjct: 127 DN 128
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 46.2 bits (108), Expect = 3e-05
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 84 RRKAATMRERRRLKKVNQAFETLKRCTTT-NPNQRLPKVEILRNAIRYIESLQELLRE-Q 141
RR+ A RER R+ +N A + L++ + Q+L K+E LR A YI +L E+LR +
Sbjct: 122 RRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGK 181
Query: 142 VENYYSLPGQSCSEPTSPTSNCSDGMPECNS 172
+ S C + PT+N G + NS
Sbjct: 182 RPDLVSYVQTLCKGLSQPTTNLVAGCLQLNS 212
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 45.4 bits (106), Expect = 5e-05
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 80 TTMDRRKAATMRERRRLKKVNQAFETLKRCTTTNP-NQRLPKVEILRNAIRYIESLQELL 138
T + RR RER R + VN AF L++ T+P +++L K EILR A++YI L +LL
Sbjct: 184 TKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLL 243
Query: 139 REQVE 143
+Q E
Sbjct: 244 NDQEE 248
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 45.4 bits (106), Expect = 5e-05
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 72 CKACKRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTT-NPNQRLPKVEILRNAIRY 130
C R + RR AA RERRR++ +N AF+ L+R +++L K E L+ A+ Y
Sbjct: 29 CAGAGRLESAARRRLAANARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMALSY 88
Query: 131 IESLQELLRE 140
I +L +L E
Sbjct: 89 IMALTRILAE 98
>gi|55743094 achaete-scute complex homolog 1 [Homo sapiens]
Length = 236
Score = 45.1 bits (105), Expect = 6e-05
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 91 RERRRLKKVNQAFETLKRCTTTNP-NQRLPKVEILRNAIRYIESLQELLRE 140
RER R+K VN F TL+ N+++ KVE LR+A+ YI +LQ+LL E
Sbjct: 126 RERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLLDE 176
>gi|206597481 achaete-scute complex-like 4 [Homo sapiens]
Length = 173
Score = 44.3 bits (103), Expect = 1e-04
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 91 RERRRLKKVNQAFETLK-RCTTTNPNQRLPKVEILRNAIRYIESLQELLREQVENYYSLP 149
RER+R++ VN+ + L+ ++RL KVE LR AI YI+ LQELL Q + L
Sbjct: 81 RERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLERQA---WGLE 137
Query: 150 GQSCSEPTSPTSNCSDGMPECNS 172
G + + P SDG + +S
Sbjct: 138 GAAGAVPQRRAECNSDGESKASS 160
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 44.3 bits (103), Expect = 1e-04
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 84 RRKAATMRERRRLKKVNQAFETLKRCTTTNP-NQRLPKVEILRNAIRYIESLQELLREQV 142
RR A +ERRR + +N AF L+ C P + +L K++ LR A YI L +LL +
Sbjct: 100 RRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDD 159
Query: 143 EN 144
+N
Sbjct: 160 QN 161
>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
Length = 356
Score = 44.3 bits (103), Expect = 1e-04
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 84 RRKAATMRERRRLKKVNQAFETLKRCTTT-NPNQRLPKVEILRNAIRYIESLQELLRE-Q 141
RR A RER R+ +N A + L++ + Q+L K+E LR A YI +L E+LR +
Sbjct: 102 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGK 161
Query: 142 VENYYSLPGQSCSEPTSPTSNCSDGMPECN 171
+ S C + PT+N G + N
Sbjct: 162 SPDLVSFVQTLCKGLSQPTTNLVAGCLQLN 191
>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
Length = 337
Score = 43.9 bits (102), Expect = 1e-04
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 84 RRKAATMRERRRLKKVNQAFETLKRCTTT-NPNQRLPKVEILRNAIRYIESLQELLR-EQ 141
RR+ A RER R+ +N A + L++ + Q+L K+E LR A YI +L E+LR +
Sbjct: 95 RRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGK 154
Query: 142 VENYYSLPGQSCSEPTSPTSNCSDGMPECNS 172
+ + C + PT+N G + N+
Sbjct: 155 RPDLLTFVQNLCKGLSQPTTNLVAGCLQLNA 185
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 43.9 bits (102), Expect = 1e-04
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 84 RRKAATMRERRRLKKVNQAFETLKRCTTTNP-NQRLPKVEILRNAIRYIESLQELLREQ 141
RR RER R + VN AF L++ T+P +++L K E+LR A++YI L LLR+Q
Sbjct: 151 RRVFTNSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLLRDQ 209
>gi|239752994 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 43.1 bits (100), Expect = 2e-04
Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 91 RERRRLKKVNQAFETLK-RCTTTNPNQRLPKVEILRNAIRYIESLQELLREQVENYYSLP 149
RER+R+K VN+ + L+ +RL KVE LR AIRYI+ LQELL S P
Sbjct: 198 RERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLS-------SAP 250
Query: 150 GQSCSEPTSPTSNCSDGMPECNSP 173
S T P S G C +P
Sbjct: 251 DGS----TPPASRGLPGTGPCPAP 270
>gi|239747548 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 43.1 bits (100), Expect = 2e-04
Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 91 RERRRLKKVNQAFETLK-RCTTTNPNQRLPKVEILRNAIRYIESLQELLREQVENYYSLP 149
RER+R+K VN+ + L+ +RL KVE LR AIRYI+ LQELL S P
Sbjct: 198 RERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLS-------SAP 250
Query: 150 GQSCSEPTSPTSNCSDGMPECNSP 173
S T P S G C +P
Sbjct: 251 DGS----TPPASRGLPGTGPCPAP 270
>gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo
sapiens]
Length = 313
Score = 43.1 bits (100), Expect = 2e-04
Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 91 RERRRLKKVNQAFETLK-RCTTTNPNQRLPKVEILRNAIRYIESLQELLREQVENYYSLP 149
RER+R+K VN+ + L+ +RL KVE LR AIRYI+ LQELL S P
Sbjct: 198 RERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLS-------SAP 250
Query: 150 GQSCSEPTSPTSNCSDGMPECNSP 173
S T P S G C +P
Sbjct: 251 DGS----TPPASRGLPGTGPCPAP 270
>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 43.1 bits (100), Expect = 2e-04
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 76 KRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTT-NPNQRLPKVEILRNAIRYIESL 134
+R+ T R A RER R++ N AF L++ T P+++L K+EILR AI YI L
Sbjct: 70 RRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYL 129
Query: 135 QELL 138
+L
Sbjct: 130 NHVL 133
>gi|5031945 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 43.1 bits (100), Expect = 2e-04
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 76 KRKSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTT-NPNQRLPKVEILRNAIRYIESL 134
+R+ T R A RER R++ N AF L++ T P+++L K+EILR AI YI L
Sbjct: 70 RRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYL 129
Query: 135 QELL 138
+L
Sbjct: 130 NHVL 133
>gi|239756681 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 203
Score = 42.7 bits (99), Expect = 3e-04
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 26/123 (21%)
Query: 18 GSCIPSPEGEFGDEFVPRVAAFGAHKAELQGSDEDEHVRAPTGHHQAGHCLMWACKACKR 77
G C P P G+ G GA+ A + +E P G +A R
Sbjct: 25 GPC-PEPGGDSG--------VLGANGASCSRGEAEE----PAGRRRA------------R 59
Query: 78 KSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTTN-PNQRLPKVEILRNAIRYIESLQE 136
+ RR AA +RER+R+ N+AF L+R + +RL K+ LR AI I +L
Sbjct: 60 PVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSL 119
Query: 137 LLR 139
+LR
Sbjct: 120 VLR 122
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 42.7 bits (99), Expect = 3e-04
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 26/123 (21%)
Query: 18 GSCIPSPEGEFGDEFVPRVAAFGAHKAELQGSDEDEHVRAPTGHHQAGHCLMWACKACKR 77
G C P P G+ G GA+ A + +E P G +A R
Sbjct: 25 GPC-PEPGGDSG--------VLGANGASCSRGEAEE----PAGRRRA------------R 59
Query: 78 KSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTTN-PNQRLPKVEILRNAIRYIESLQE 136
+ RR AA +RER+R+ N+AF L+R + +RL K+ LR AI I +L
Sbjct: 60 PVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSL 119
Query: 137 LLR 139
+LR
Sbjct: 120 VLR 122
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 42.7 bits (99), Expect = 3e-04
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 26/123 (21%)
Query: 18 GSCIPSPEGEFGDEFVPRVAAFGAHKAELQGSDEDEHVRAPTGHHQAGHCLMWACKACKR 77
G C P P G+ G GA+ A + +E P G +A R
Sbjct: 25 GPC-PEPGGDSG--------VLGANGASCSRGEAEE----PAGRRRA------------R 59
Query: 78 KSTTMDRRKAATMRERRRLKKVNQAFETLKRCTTTN-PNQRLPKVEILRNAIRYIESLQE 136
+ RR AA +RER+R+ N+AF L+R + +RL K+ LR AI I +L
Sbjct: 60 PVRSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSL 119
Query: 137 LLR 139
+LR
Sbjct: 120 VLR 122
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 42.7 bits (99), Expect = 3e-04
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 84 RRKAATMRERRRLKKVNQAFETLKRCTTT-NPNQRLPKVEILRNAIRYIESLQELLR 139
RR AA RERRR+ +N AF+ L+ + N +++L K E L+ A YI +L ELL+
Sbjct: 160 RRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQ 216
>gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]
Length = 108
Score = 42.7 bits (99), Expect = 3e-04
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 82 MDRRKAATMRERRRLKKVNQAFETLKRCTTTN-PNQRLPKVEILRNAIRYIESLQELLRE 140
M R+ RER R + VN AF L++ T+ P+++L K E LR A+RYI L ++L E
Sbjct: 1 MTRKIFTNTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGE 60
Query: 141 Q 141
Q
Sbjct: 61 Q 61
>gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]
Length = 193
Score = 42.7 bits (99), Expect = 3e-04
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 72 CKACKRKSTTMDRRKAATM-----RERRRLKKVNQAFETLKRCTTTN-PNQRLPKVEILR 125
C +R +T AA + RER R+K VN F+ L++ +++L KVE LR
Sbjct: 34 CSRRRRPATAETGGGAAAVARRNERERNRVKLVNLGFQALRQHVPHGGASKKLSKVETLR 93
Query: 126 NAIRYIESLQELLRE 140
+A+ YI +LQ LL E
Sbjct: 94 SAVEYIRALQRLLAE 108
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,063,766
Number of Sequences: 37866
Number of extensions: 510697
Number of successful extensions: 2059
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1940
Number of HSP's gapped (non-prelim): 154
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.