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Search of human proteins with 15529982
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15529982 IMP4, U3 small nucleolar ribonucleoprotein, homolog
[Homo sapiens]
(291 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15529982 IMP4, U3 small nucleolar ribonucleoprotein, homolog ... 590 e-169
gi|145275210 RNA processing factor 1 [Homo sapiens] 127 9e-30
gi|55770900 BRIX [Homo sapiens] 39 0.007
gi|189083802 myosin VIIA isoform 2 [Homo sapiens] 36 0.035
gi|189083800 myosin VIIA isoform 3 [Homo sapiens] 36 0.035
gi|189083798 myosin VIIA isoform 1 [Homo sapiens] 36 0.035
gi|148746195 trichohyalin [Homo sapiens] 36 0.046
gi|50659093 mannosidase, alpha, class 2B, member 2 [Homo sapiens] 35 0.10
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 34 0.13
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 34 0.13
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 34 0.13
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 34 0.13
gi|93102364 SWAP-70 protein [Homo sapiens] 33 0.23
gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens] 32 0.50
gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens] 32 0.50
gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens] 32 0.50
gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens] 32 0.50
gi|239735588 TRAF2 and NCK interacting kinase isoform 6 [Homo sa... 32 0.66
gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo sa... 32 0.66
gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo sa... 32 0.66
gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo sap... 32 0.66
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 32 0.66
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 32 0.66
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 32 0.66
gi|18375528 UPF3 regulator of nonsense transcripts homolog B iso... 32 0.86
gi|12711674 UPF3 regulator of nonsense transcripts homolog B iso... 32 0.86
gi|169215927 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|239752137 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|169215483 PREDICTED: hypothetical protein isoform 2 [Homo sap... 31 1.1
gi|52426743 cisplatin resistance-associated overexpressed protei... 31 1.1
>gi|15529982 IMP4, U3 small nucleolar ribonucleoprotein, homolog
[Homo sapiens]
Length = 291
Score = 590 bits (1520), Expect = e-169
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 60
MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD
Sbjct: 1 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 60
Query: 61 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120
DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE
Sbjct: 61 DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120
Query: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 180
VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMS 180
Query: 181 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 240
EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR
Sbjct: 181 EAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKTDHR 240
Query: 241 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE 291
NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE
Sbjct: 241 NVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFLSTE 291
>gi|145275210 RNA processing factor 1 [Homo sapiens]
Length = 349
Score = 127 bits (320), Expect = 9e-30
Identities = 87/289 (30%), Positives = 146/289 (50%), Gaps = 13/289 (4%)
Query: 9 RREYLYRKAREEAQRSAQERKERLRRALEE------NRLIPTELRREALALQGSLEFDDA 62
RR ++ + +++ ++ K++L++ E + +P + + + + +++ +D
Sbjct: 62 RRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDE 121
Query: 63 GGEGVTSHVDDEYR--WAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120
E DE+ + PK++ITTS P R ++L V P + R
Sbjct: 122 --EVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLA 179
Query: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLG-TM 179
+ ++ C A TDL+V++E R TP GLI+SHLP GPTA+F + +V +R +I G
Sbjct: 180 LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDP 239
Query: 180 SEAKPHLITHGFSSRLGKRVSDILRYLFP-VPKDDSHRVITFANQDDYISFRHHVYKKTD 238
+E P +I + F++RLG + + LFP P+ +V TF NQ DYI FR H Y
Sbjct: 240 TEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRS 299
Query: 239 HRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVF 287
+ V + E+GPRF LKL ++ GT + + + EW P +R F
Sbjct: 300 EKKVGIQELGPRFTLKLRSLQKGTFDSK-YGEYEWVHKPREMDTSRRKF 347
>gi|55770900 BRIX [Homo sapiens]
Length = 353
Score = 38.5 bits (88), Expect = 0.007
Identities = 42/201 (20%), Positives = 88/201 (43%), Gaps = 22/201 (10%)
Query: 76 RWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQ---RMNRGRHEVGALVRACKANG 132
+W E +++I +SR + R + ++L+++ P ++ +M+R + ++ + C+
Sbjct: 55 KWKNKE--RILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDR-KDKLFVINEVCEMKN 111
Query: 133 VTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFS 192
+ + + + +S+ P GP+A F + N+ ++ G + L++ F
Sbjct: 112 CNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLS--FD 169
Query: 193 SRLGKR-----VSDILRYLFPVPKDDSH------RVITFANQDDYISFRHHVYKKTDHRN 241
+ + ++L +F P+ V TF D+ I FR+ + D
Sbjct: 170 PAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEED--- 226
Query: 242 VELTEVGPRFELKLYMIRLGT 262
L E+GPRF L L I G+
Sbjct: 227 AALVEIGPRFVLNLIKIFQGS 247
>gi|189083802 myosin VIIA isoform 2 [Homo sapiens]
Length = 2175
Score = 36.2 bits (82), Expect = 0.035
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLE 58
L E +LR+E +KA+EEA+R QER +L R E L E R L +E
Sbjct: 874 LAEEEKLRKEMSAKKAKEEAERKHQERLAQLAREDAERELKEKEAARRKKELLEQME 930
>gi|189083800 myosin VIIA isoform 3 [Homo sapiens]
Length = 1204
Score = 36.2 bits (82), Expect = 0.035
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLE 58
L E +LR+E +KA+EEA+R QER +L R E L E R L +E
Sbjct: 874 LAEEEKLRKEMSAKKAKEEAERKHQERLAQLAREDAERELKEKEAARRKKELLEQME 930
>gi|189083798 myosin VIIA isoform 1 [Homo sapiens]
Length = 2215
Score = 36.2 bits (82), Expect = 0.035
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLE 58
L E +LR+E +KA+EEA+R QER +L R E L E R L +E
Sbjct: 874 LAEEEKLRKEMSAKKAKEEAERKHQERLAQLAREDAERELKEKEAARRKKELLEQME 930
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 35.8 bits (81), Expect = 0.046
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 10/58 (17%)
Query: 2 LRREARLRREYLYRKAREE---AQRSAQE---RKERLRRALEENRLIP----TELRRE 49
L+ E +LRR+ L RK REE Q + QE R+ER R+ LEE +L P +LRR+
Sbjct: 1710 LQEEQQLRRQELERKFREEEQLRQETEQEQLRRQERYRKILEEEQLRPEREEQQLRRQ 1767
Score = 35.0 bits (79), Expect = 0.078
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 2 LRREARLRREYLYRKAREE---AQRSAQERKE-RLRRALEENR 40
LRRE +LRRE R+ +EE Q+ QER+E RL+R EE R
Sbjct: 413 LRREQQLRREQQLRREQEEERHEQKHEQERREQRLKREQEERR 455
Score = 33.9 bits (76), Expect = 0.17
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKE-RLRRALEENR 40
LRRE RRE L + REE +R QER+E RL+R EE R
Sbjct: 538 LRREQEERREQLLK--REEEKRLEQERREQRLKREQEERR 575
Score = 33.5 bits (75), Expect = 0.23
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRRE 49
LRRE RRE R+ +EE +R Q R+E+ E+ +LRRE
Sbjct: 339 LRREQEERREQQLRREQEEERREQQLRREQEEERREQQLRREQQLRRE 386
Score = 33.1 bits (74), Expect = 0.29
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 2 LRREARLRREYLY---RKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLE 58
LR E R +RE + + +E+ +R +ER++ L+ EE +L E ++ + L+
Sbjct: 798 LRAEERQQREQRFLPEEEEKEQRRRQRREREKELQFLEEEEQLQRRERAQQLQEEEDGLQ 857
Query: 59 FDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGR 118
D D ++RW E+ K T + + KE +L+ + + R
Sbjct: 858 EDQERRRSQEQRRDQKWRWQLEEERKRRRHTLYAKPALQEQLRKEQQLLQEEEEELQREE 917
Query: 119 HE 120
E
Sbjct: 918 RE 919
Score = 32.3 bits (72), Expect = 0.50
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKE-RLRRALEENRLIPTELRRE 49
RRE +LRRE R+ ++ + +ER+E +LRR EE R +LRRE
Sbjct: 334 RREQQLRREQEERREQQLRREQEEERREQQLRREQEEERR-EQQLRRE 380
Score = 32.3 bits (72), Expect = 0.50
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKERLRRALEENR 40
LRRE +LRRE R+ ++ + R+++LRR EE R
Sbjct: 395 LRREQQLRREQQLRREQQLRREQQLRREQQLRREQEEER 433
Score = 32.0 bits (71), Expect = 0.66
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 3 RREARLRREY-LYRKAREEAQRSAQERKERLRRALEENRLIPTELRRE 49
+++ RLRRE L RK EE + +ER+E+ R ++ +LRRE
Sbjct: 295 QQQQRLRREQQLRRKQEEERREQQEERREQQERREQQEERREQQLRRE 342
Score = 31.6 bits (70), Expect = 0.86
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 11/57 (19%)
Query: 2 LRREARLRREYLY-RKAREEAQRSAQERKE--------RLRRALEENRLIPTELRRE 49
LRRE +LRR+ R+ ++E +R QER+E +LRR EE R +LRRE
Sbjct: 300 LRREQQLRRKQEEERREQQEERREQQERREQQEERREQQLRREQEERR--EQQLRRE 354
Score = 31.6 bits (70), Expect = 0.86
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKE-RLRRALEENRLIPTELRRE 49
RRE + RRE + ++ +R +ER+E +LRR EE R +LRRE
Sbjct: 321 RREQQERREQQEERREQQLRREQEERREQQLRREQEEERR-EQQLRRE 367
Score = 31.2 bits (69), Expect = 1.1
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQE-RKERLRRALEENR 40
L+RE RR++L K EE +R QE RK++L+R EE R
Sbjct: 447 LKREQEERRDWL--KREEETERHEQERRKQQLKRDQEEER 484
Score = 30.8 bits (68), Expect = 1.5
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 5 EARLRREYLY---RKAREEAQRSAQERKERLRRALEEN--RLIPTELRREALALQ 54
E +LRR L RK REE Q+ +ER++R+ + EE R T LR+E LQ
Sbjct: 207 EEQLRRRELLELRRKGREEKQQQRRERQDRVFQEEEEKEWRKRETVLRKEEEKLQ 261
Score = 30.8 bits (68), Expect = 1.5
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 7 RLRREYLYRKAREEAQRSAQERKER-LRRALEENRLIPTELRRE 49
+L R+ L R+ +EE Q+ + R+E+ LRR EE R E RRE
Sbjct: 280 KLERQELRRERQEEEQQQQRLRREQQLRRKQEEERREQQEERRE 323
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRRE 49
LRRE +LRRE R+ ++ + R+++LRR + R +LRRE
Sbjct: 377 LRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRR--EQQLRRE 422
Score = 30.4 bits (67), Expect = 1.9
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 3 RREARLRR----EYLYRKAREEAQ--RSAQERKERLRRALEENRL 41
RRE RL+R E L ++ R E Q R +ER+E+L + EE RL
Sbjct: 514 RREQRLKRQEEEERLQQRLRSEQQLRREQEERREQLLKREEEKRL 558
Score = 30.0 bits (66), Expect = 2.5
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKE-RLRRALEENRLIPTELRREALALQGSL 57
L+R+ R + K EE +R QER+E +LRR EE R + + E LQ L
Sbjct: 476 LKRDQEEERRERWLKLEEEERREQQERREQQLRREQEERREQRLKRQEEEERLQQRL 532
Score = 30.0 bits (66), Expect = 2.5
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKE-RLRRALEENRLIPTELRRE 49
RR+ L+ E + +++ +R QER+E RL+R EE RL L+RE
Sbjct: 629 RRQQLLKSEEQEERRQQQLRREQQERREQRLKREEEEERL-EQRLKRE 675
Score = 30.0 bits (66), Expect = 2.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 4 REARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRRE 49
R+ + R E R+ REE Q S QER + R LEE ++ E R+
Sbjct: 1553 RDRKFREEEQLRQEREEQQLSRQERDRKFR--LEEQKVRRQEQERK 1596
Score = 30.0 bits (66), Expect = 2.5
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTE--LRRE 49
R E +LRR+ RK REE Q QER+E+ R+ E +R E LR+E
Sbjct: 1759 REEQQLRRQERDRKFREEEQ-LRQEREEQQLRSQESDRKFREEEQLRQE 1806
Score = 29.6 bits (65), Expect = 3.3
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRRE 49
RRE +LRRE ++ R E + QE +ERL++ L + +LRRE
Sbjct: 502 RREQQLRRE---QEERREQRLKRQEEEERLQQRLRSEQ----QLRRE 541
Score = 29.6 bits (65), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 4 REARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRRE 49
RE + RR+ RK REE Q + ++ LRR + + ELR +
Sbjct: 1325 REEKRRRQETDRKFREEEQLLQEREEQPLRRQERDRKFREEELRHQ 1370
Score = 28.9 bits (63), Expect = 5.6
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRRE 49
RRE +LRRE R+ ++ + R+++LRR + R +LRRE
Sbjct: 372 RREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRR--EQQLRRE 416
Score = 28.9 bits (63), Expect = 5.6
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 2 LRREARLRREYLYRKARE-EAQRSAQERKERLRRAL--EENRLIPTELRRE 49
L+RE RR+ L ++ E QR +E++ERL + L EE + E RRE
Sbjct: 567 LKREQEERRDQLLKREEERRQQRLKREQEERLEQRLKREEVERLEQEERRE 617
Score = 28.9 bits (63), Expect = 5.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 1 MLRREARLRREYLYRKAREEAQRSAQERKERLR 33
+LR E RR+ R+ REE + Q+RK+R R
Sbjct: 1183 LLREEQEKRRQERERQYREEEELQRQKRKQRYR 1215
Score = 28.9 bits (63), Expect = 5.6
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 5 EARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREAL 51
E +LRR+ RK REE Q+ R+ER R+ L+E + +LRR+ L
Sbjct: 1681 EQQLRRQERDRKFREEEQQ--LRRQERERKFLQEEQ----QLRRQEL 1721
Score = 28.5 bits (62), Expect = 7.3
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 3 RREARLRREYLYRKAREEAQRSAQE---RKERLRRALEENRLIPTELRRE 49
RRE RL+RE + R++ +S ++ R+++LRR +E R L+RE
Sbjct: 615 RREQRLKREEPEEERRQQLLKSEEQEERRQQQLRREQQERR--EQRLKRE 662
Score = 28.5 bits (62), Expect = 7.3
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 2 LRREARLRREYLYRK-AREEAQRSAQERKERLRR 34
L E RLRR+ RK +EE Q QER+++LR+
Sbjct: 1377 LEEEQRLRRQERERKFLKEEQQLRCQEREQQLRQ 1410
Score = 28.1 bits (61), Expect = 9.5
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 3 RREARLRREYLYRKAREEAQRSAQE--RKERLRRALEENRLIPTELRRE 49
RRE +LRRE + ++ +R +E R+++LRR + R +LRRE
Sbjct: 346 RREQQLRREQEEERREQQLRREQEEERREQQLRREQQLRR--EQQLRRE 392
Score = 28.1 bits (61), Expect = 9.5
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKE-RLRRALEENRLIPTELRRE 49
RRE +LRRE + ++ +R Q R+E +LRR + R +LRRE
Sbjct: 359 RREQQLRREQEEERREQQLRREQQLRREQQLRREQQLRR--EQQLRRE 404
Score = 28.1 bits (61), Expect = 9.5
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 3 RREARLRRE----YLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREAL 51
RR+ RL+RE R REE +R QE + R EE P E RR+ L
Sbjct: 585 RRQQRLKREQEERLEQRLKREEVERLEQEERREQRLKREE----PEEERRQQL 633
Score = 28.1 bits (61), Expect = 9.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 5 EARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRRE 49
+ +LRR+ YRK EE Q + +++LRR + + E R+
Sbjct: 1737 QEQLRRQERYRKILEEEQLRPEREEQQLRRQERDRKFREEEQLRQ 1781
>gi|50659093 mannosidase, alpha, class 2B, member 2 [Homo sapiens]
Length = 1009
Score = 34.7 bits (78), Expect = 0.10
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 22/144 (15%)
Query: 104 LKLVFPGAQRMNRGRHEVGALVR-ACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYF 162
L + FPG + + H V + ++ + + DLL++ T GL H PTA
Sbjct: 493 LTVGFPGVRVTDEAGHPVPSQIQNSTETPSAYDLLILT----TIPGLSYRHYNIRPTAG- 547
Query: 163 TLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFAN 222
GT A T F RL +R S RYL PV D I +
Sbjct: 548 -----------AQEGTQEPAATVASTLQFGRRLRRRTSHAGRYLVPVAND---CYIVLLD 593
Query: 223 QDDYISFRHHVYKKTDHRNVELTE 246
QD + H ++++ +R V +T+
Sbjct: 594 QD--TNLMHSIWERQSNRTVRVTQ 615
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 34.3 bits (77), Expect = 0.13
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 5 EARLRREYLYRKAREEAQRSAQERKERLRRALEENRL 41
E R ++E L RK EEA + A+E +E RR LEENRL
Sbjct: 825 EERRKQEELLRKQEEEAAKWAREEEEAQRR-LEENRL 860
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
sapiens]
Length = 1320
Score = 34.3 bits (77), Expect = 0.13
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 5 EARLRREYLYRKAREEAQRSAQERKERLRRALEENRL 41
E R ++E L RK EEA + A+E +E RR LEENRL
Sbjct: 852 EERRKQEELLRKQEEEAAKWAREEEEAQRR-LEENRL 887
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 34.3 bits (77), Expect = 0.13
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 5 EARLRREYLYRKAREEAQRSAQERKERLRRALEENRL 41
E R ++E L RK EEA + A+E +E RR LEENRL
Sbjct: 831 EERRKQEELLRKQEEEAAKWAREEEEAQRR-LEENRL 866
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 34.3 bits (77), Expect = 0.13
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 5 EARLRREYLYRKAREEAQRSAQERKERLRRALEENRL 41
E R ++E L RK EEA + A+E +E RR LEENRL
Sbjct: 831 EERRKQEELLRKQEEEAAKWAREEEEAQRR-LEENRL 866
>gi|93102364 SWAP-70 protein [Homo sapiens]
Length = 585
Score = 33.5 bits (75), Expect = 0.23
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 11 EYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQ 54
E + +K E A R+A+E K+RL+ +E TEL RE L Q
Sbjct: 356 EAVRKKLEEAASRAAEEEKKRLQTQVELQARFSTELEREKLIRQ 399
>gi|47717125 intersectin 1 isoform ITSN-s [Homo sapiens]
Length = 1220
Score = 32.3 bits (72), Expect = 0.50
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTEL-RREALALQGSLEFD 60
L E +L ++ + REE +R ER+E +R LE R + E RR+ L Q + E +
Sbjct: 407 LELEKQLEKQRELERQREEERRKEIERREAAKRELERQRQLEWERNRRQELLNQRNKEQE 466
Query: 61 D 61
D
Sbjct: 467 D 467
Score = 30.0 bits (66), Expect = 2.5
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRRE 49
RR+A L ++ ++ + +R+ QERKER R+ E R + E + E
Sbjct: 368 RRQALLEQQRKEQERLAQLERAEQERKERERQEQERKRQLELEKQLE 414
>gi|47717123 intersectin 1 isoform ITSN-l [Homo sapiens]
Length = 1721
Score = 32.3 bits (72), Expect = 0.50
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTEL-RREALALQGSLEFD 60
L E +L ++ + REE +R ER+E +R LE R + E RR+ L Q + E +
Sbjct: 407 LELEKQLEKQRELERQREEERRKEIERREAAKRELERQRQLEWERNRRQELLNQRNKEQE 466
Query: 61 D 61
D
Sbjct: 467 D 467
Score = 30.0 bits (66), Expect = 2.5
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRRE 49
RR+A L ++ ++ + +R+ QERKER R+ E R + E + E
Sbjct: 368 RRQALLEQQRKEQERLAQLERAEQERKERERQEQERKRQLELEKQLE 414
>gi|110624787 5'-3' exoribonuclease 1 isoform b [Homo sapiens]
Length = 1693
Score = 32.3 bits (72), Expect = 0.50
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 29/152 (19%)
Query: 23 RSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEG----VTSHVDDEYRWA 78
RSA+E ++++++A+E+ +PTE R ++ + EF E V + + W
Sbjct: 103 RSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQ 162
Query: 79 GVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLV 138
GV + F G + G H++ +R+ KA D
Sbjct: 163 GV------------------------TIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNT 198
Query: 139 VHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMR 170
H G LI+ L A+F+L +R
Sbjct: 199 RHCLYGLDADLIMLGLT-SHEAHFSLLREEVR 229
>gi|110624792 5'-3' exoribonuclease 1 isoform a [Homo sapiens]
Length = 1706
Score = 32.3 bits (72), Expect = 0.50
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 29/152 (19%)
Query: 23 RSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEG----VTSHVDDEYRWA 78
RSA+E ++++++A+E+ +PTE R ++ + EF E V + + W
Sbjct: 103 RSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQ 162
Query: 79 GVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLV 138
GV + F G + G H++ +R+ KA D
Sbjct: 163 GV------------------------TIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNT 198
Query: 139 VHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMR 170
H G LI+ L A+F+L +R
Sbjct: 199 RHCLYGLDADLIMLGLT-SHEAHFSLLREEVR 229
>gi|239735588 TRAF2 and NCK interacting kinase isoform 6 [Homo
sapiens]
Length = 1297
Score = 32.0 bits (71), Expect = 0.66
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSL 57
++E RR Y + REE +R A+ +E +RR LEE + L+++ L Q L
Sbjct: 418 QQEREQRRHYEEQMRREEERRRAEHEQEYIRRQLEEEQRQLEILQQQLLHEQALL 472
Score = 28.9 bits (63), Expect = 5.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 4 REARLRREYLYRKAREEAQRSAQ---ERKERLRRALEENRLIPTELRRE 49
R LRR+ L ++ RE + Q ER++R+ E+ R + + RRE
Sbjct: 364 RSEALRRQQLEQQQRENEEHKRQLLAERQKRIEEQKEQRRRLEEQQRRE 412
>gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo
sapiens]
Length = 1305
Score = 32.0 bits (71), Expect = 0.66
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSL 57
++E RR Y + REE +R A+ +E +RR LEE + L+++ L Q L
Sbjct: 418 QQEREQRRHYEEQMRREEERRRAEHEQEYIRRQLEEEQRQLEILQQQLLHEQALL 472
Score = 28.9 bits (63), Expect = 5.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 4 REARLRREYLYRKAREEAQRSAQ---ERKERLRRALEENRLIPTELRRE 49
R LRR+ L ++ RE + Q ER++R+ E+ R + + RRE
Sbjct: 364 RSEALRRQQLEQQQRENEEHKRQLLAERQKRIEEQKEQRRRLEEQQRRE 412
>gi|239735580 TRAF2 and NCK interacting kinase isoform 2 [Homo
sapiens]
Length = 1352
Score = 32.0 bits (71), Expect = 0.66
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSL 57
++E RR Y + REE +R A+ +E +RR LEE + L+++ L Q L
Sbjct: 418 QQEREQRRHYEEQMRREEERRRAEHEQEYIRRQLEEEQRQLEILQQQLLHEQALL 472
Score = 28.9 bits (63), Expect = 5.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 4 REARLRREYLYRKAREEAQRSAQ---ERKERLRRALEENRLIPTELRRE 49
R LRR+ L ++ RE + Q ER++R+ E+ R + + RRE
Sbjct: 364 RSEALRRQQLEQQQRENEEHKRQLLAERQKRIEEQKEQRRRLEEQQRRE 412
>gi|55741807 TRAF2 and NCK interacting kinase isoform 1 [Homo
sapiens]
Length = 1360
Score = 32.0 bits (71), Expect = 0.66
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSL 57
++E RR Y + REE +R A+ +E +RR LEE + L+++ L Q L
Sbjct: 418 QQEREQRRHYEEQMRREEERRRAEHEQEYIRRQLEEEQRQLEILQQQLLHEQALL 472
Score = 28.9 bits (63), Expect = 5.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 4 REARLRREYLYRKAREEAQRSAQ---ERKERLRRALEENRLIPTELRRE 49
R LRR+ L ++ RE + Q ER++R+ E+ R + + RRE
Sbjct: 364 RSEALRRQQLEQQQRENEEHKRQLLAERQKRIEEQKEQRRRLEEQQRRE 412
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 32.0 bits (71), Expect = 0.66
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTE-LRREALALQGSLEFD 60
L E RL ++ + REE +R ER+E ++ LE R + E +RR+ L Q + E +
Sbjct: 420 LELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEWERIRRQELLNQKNREQE 479
Query: 61 D 61
+
Sbjct: 480 E 480
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 32.0 bits (71), Expect = 0.66
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTE-LRREALALQGSLEFD 60
L E RL ++ + REE +R ER+E ++ LE R + E +RR+ L Q + E +
Sbjct: 420 LELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEWERIRRQELLNQKNREQE 479
Query: 61 D 61
+
Sbjct: 480 E 480
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 32.0 bits (71), Expect = 0.66
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 2 LRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTE-LRREALALQGSLEFD 60
L E RL ++ + REE +R ER+E ++ LE R + E +RR+ L Q + E +
Sbjct: 420 LELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEWERIRRQELLNQKNREQE 479
Query: 61 D 61
+
Sbjct: 480 E 480
>gi|18375528 UPF3 regulator of nonsense transcripts homolog B
isoform 1 [Homo sapiens]
Length = 483
Score = 31.6 bits (70), Expect = 0.86
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREAL 51
+RE R RRE ++ REE +R +E ++R R+ +E+ + I R+ L
Sbjct: 214 KREERRRREIERKRQREEERRKWKEEEKRKRKDIEKLKKIDRIPERDKL 262
>gi|12711674 UPF3 regulator of nonsense transcripts homolog B
isoform 2 [Homo sapiens]
Length = 470
Score = 31.6 bits (70), Expect = 0.86
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 3 RREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREAL 51
+RE R RRE ++ REE +R +E ++R R+ +E+ + I R+ L
Sbjct: 214 KREERRRREIERKRQREEERRKWKEEEKRKRKDIEKLKKIDRIPERDKL 262
>gi|169215927 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 31.2 bits (69), Expect = 1.1
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 9 RREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLE 58
RR + + EA+ +A+ER ER+RR LEE +L + + LQ E
Sbjct: 103 RRSQAAQPLQGEAREAARERAERVRRRLEEAERHKEDLEQHSRQLQEQWE 152
>gi|239752137 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 31.2 bits (69), Expect = 1.1
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 9 RREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLE 58
RR + + EA+ +A+ER ER+RR LEE +L + + LQ E
Sbjct: 103 RRSQAAQPLQGEAREAARERAERVRRRLEEAERHKEDLEQHSRQLQEQWE 152
>gi|169215483 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 356
Score = 31.2 bits (69), Expect = 1.1
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 9 RREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLE 58
RR + + EA+ +A+ER ER+RR LEE +L + + LQ E
Sbjct: 103 RRSQAAQPLQGEAREAARERAERVRRRLEEAERHKEDLEQHSRQLQEQWE 152
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 4 REARLRREYLYRKAREEAQRSAQERKERLRRALEENR 40
R+ RL++E R+ RE+ + +E +ER RR EE R
Sbjct: 243 RDERLKKEKQEREEREKEREREREERERKRRREEEER 279
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,794,672
Number of Sequences: 37866
Number of extensions: 479494
Number of successful extensions: 2640
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 2087
Number of HSP's gapped (non-prelim): 628
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.