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Search of human proteins with 154816184
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154816184 transmembrane protein 55B isoform 2 [Homo sapiens]
(277 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154816184 transmembrane protein 55B isoform 2 [Homo sapiens] 602 e-172
gi|154816186 transmembrane protein 55B isoform 1 [Homo sapiens] 595 e-170
gi|24308165 transmembrane protein 55A [Homo sapiens] 295 4e-80
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 45 9e-05
gi|133908631 SWI/SNF-related matrix-associated actin-dependent r... 41 0.001
gi|133908629 SWI/SNF-related matrix-associated actin-dependent r... 41 0.001
gi|91208420 bassoon protein [Homo sapiens] 41 0.001
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 41 0.001
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 40 0.002
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 40 0.002
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 40 0.003
gi|5454140 tumor susceptibility gene 101 [Homo sapiens] 40 0.003
gi|6912752 zinc finger protein 281 [Homo sapiens] 40 0.003
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 40 0.003
gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens] 39 0.004
gi|13129048 oligonucleotide/oligosaccharide-binding fold contain... 39 0.004
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 39 0.005
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 39 0.005
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 39 0.005
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 39 0.005
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 39 0.005
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 39 0.005
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 39 0.005
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 39 0.005
gi|49087132 sal-like 2 [Homo sapiens] 39 0.007
gi|6912446 potassium voltage-gated channel, subfamily H, member ... 38 0.011
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 38 0.011
gi|7662494 Kruppel-like factor 15 [Homo sapiens] 38 0.011
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 37 0.014
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 37 0.014
>gi|154816184 transmembrane protein 55B isoform 2 [Homo sapiens]
Length = 277
Score = 602 bits (1551), Expect = e-172
Identities = 277/277 (100%), Positives = 277/277 (100%)
Query: 1 MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVL 60
MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVL
Sbjct: 1 MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVL 60
Query: 61 PGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGK 120
PGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGK
Sbjct: 61 PGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGK 120
Query: 121 KYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVICGHCKNT 180
KYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVICGHCKNT
Sbjct: 121 KYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVICGHCKNT 180
Query: 181 FLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGTWKHARRY 240
FLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGTWKHARRY
Sbjct: 181 FLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGTWKHARRY 240
Query: 241 GGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS 277
GGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS
Sbjct: 241 GGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS 277
>gi|154816186 transmembrane protein 55B isoform 1 [Homo sapiens]
Length = 284
Score = 595 bits (1533), Expect = e-170
Identities = 277/284 (97%), Positives = 277/284 (97%), Gaps = 7/284 (2%)
Query: 1 MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGA-------AFPPFP 53
MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGA AFPPFP
Sbjct: 1 MAADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAGKHAPPQAFPPFP 60
Query: 54 EGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPI 113
EGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPI
Sbjct: 61 EGHPAVLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPI 120
Query: 114 KNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVI 173
KNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVI
Sbjct: 121 KNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVI 180
Query: 174 CGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGT 233
CGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGT
Sbjct: 181 CGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGT 240
Query: 234 WKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS 277
WKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS
Sbjct: 241 WKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS 284
>gi|24308165 transmembrane protein 55A [Homo sapiens]
Length = 257
Score = 295 bits (754), Expect = 4e-80
Identities = 148/285 (51%), Positives = 178/285 (62%), Gaps = 36/285 (12%)
Query: 1 MAADG--ERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPA 58
MAADG ERSPLLS A G +TP+APPY E P
Sbjct: 1 MAADGVDERSPLLS-------------------ASHSGNVTPTAPPY------LQESSPR 35
Query: 59 VLPGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPP 118
E PPPY+ + SPD+ P+I CRVCQSLIN++GK+HQHVVKC VCNEATPIKN P
Sbjct: 36 A---ELPPPYTAIASPDASGIPVINCRVCQSLINLDGKLHQHVVKCTVCNEATPIKNPPT 92
Query: 119 GKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPV------HPGPLSPEPQPMGVRV 172
GKKYVRCPCNCLLICK TS+RI CPRP C+RIINLGPV P + QP G RV
Sbjct: 93 GKKYVRCPCNCLLICKDTSRRIGCPRPNCRRIINLGPVMLISEEQPAQPALPIQPEGTRV 152
Query: 173 ICGHCKNTFLWTEFTDRTLARCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFG 232
+CGHC NTFLW E TLA+CPHC+K+SS+G PR+RC +G++ GL G
Sbjct: 153 VCGHCGNTFLWMELRFNTLAKCPHCKKISSVGSALPRRRCCAYITIGMICIFIGVGLTVG 212
Query: 233 TWKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPVQNFS 277
T ARR+ Y +WA LL ++CL RA YW ++VS+P +F+
Sbjct: 213 TPDFARRFRATYVSWAIAYLLGLICLIRACYWGAIRVSYPEHSFA 257
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 44.7 bits (104), Expect = 9e-05
Identities = 30/69 (43%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 3 ADGERSPLLSEPIDGGAGGNGLVGPGGSG--AGPGGGLTPSAPPY--------GAAFPPF 52
A GER L P G GG GL GP G +GP GG+ PP G PP
Sbjct: 99 APGERGSL-GPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPGPPGPPG 157
Query: 53 PEGHPAVLP 61
P GHP VLP
Sbjct: 158 PPGHPGVLP 166
Score = 31.2 bits (69), Expect = 1.0
Identities = 27/77 (35%), Positives = 29/77 (37%), Gaps = 22/77 (28%)
Query: 15 IDGGAGGNGLVGP------------------GGSG-AGPGGGLTPSAPPYGAAF--PPFP 53
+DG G +G GP GG G GP G S PP G PP P
Sbjct: 84 VDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGP 143
Query: 54 EGHPAVLPGEDPPPYSP 70
G P LPG PP P
Sbjct: 144 SGLPG-LPGPPGPPGPP 159
Score = 30.4 bits (67), Expect = 1.8
Identities = 27/73 (36%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 18 GAGGNGLVGPGGSGAGPG----GGLTPSAPPYGAAFPPFPEGHPAV--LPGEDPPPYSP- 70
GA GL GP G PG G+ A P G PP P+G P PGE P P
Sbjct: 24 GAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAGLPGLPG 83
Query: 71 ---LTSPDSGSAP 80
LT D P
Sbjct: 84 VDGLTGRDGPPGP 96
Score = 29.3 bits (64), Expect = 3.9
Identities = 24/63 (38%), Positives = 25/63 (39%), Gaps = 12/63 (19%)
Query: 15 IDGGAGGNGLVGPGGSGAGPG-------GGLTPSAPPY----GAAFPPFPEGHPAVLPGE 63
IDG AG GL GP G PG GL P P G PP P+G P
Sbjct: 48 IDGEAGPPGLPGPPGPKGAPGKPGKPGEAGL-PGLPGVDGLTGRDGPPGPKGAPGERGSL 106
Query: 64 DPP 66
PP
Sbjct: 107 GPP 109
>gi|133908631 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform b [Homo sapiens]
Length = 474
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 17 GGAGGNGLVGPGGS-------GAGPGGGLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYS 69
GGAG +GPGG+ G PG GL S P GAA+P P +LPG P
Sbjct: 20 GGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMP-GAAYP-----RPGMLPGSRMTPQG 73
Query: 70 P-LTSPDSGSAPMITCRVCQS 89
P + P G P + + QS
Sbjct: 74 PSMGPPGYGGNPSVRPGLAQS 94
>gi|133908629 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d1 isoform a [Homo sapiens]
Length = 515
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 17 GGAGGNGLVGPGGS-------GAGPGGGLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYS 69
GGAG +GPGG+ G PG GL S P GAA+P P +LPG P
Sbjct: 20 GGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMP-GAAYP-----RPGMLPGSRMTPQG 73
Query: 70 P-LTSPDSGSAPMITCRVCQS 89
P + P G P + + QS
Sbjct: 74 PSMGPPGYGGNPSVRPGLAQS 94
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 15 IDGGAGGNGL----VGPG-GSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYS 69
++GGAG L GPG G G GPG G PSAP G P +P P
Sbjct: 7 LEGGAGDGPLPPGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPPVPGPGPG 66
Query: 70 PLTSPDSGS 78
P P GS
Sbjct: 67 PGPGPGPGS 75
Score = 28.5 bits (62), Expect = 6.7
Identities = 28/99 (28%), Positives = 33/99 (33%), Gaps = 23/99 (23%)
Query: 26 GPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSA------ 79
GP G+GPG G P GA P P PG P TSP G A
Sbjct: 396 GPKPLGSGPGPGPAP-----GAKTEPGARMGPGSGPGA-LPKTGGTTSPKHGRAEHQAAS 449
Query: 80 -----------PMITCRVCQSLINVEGKMHQHVVKCGVC 107
C +CQ+ +NV K + C C
Sbjct: 450 KAAAKPKTMPKERAICPLCQAELNVGSKSPANYNTCTTC 488
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 40.8 bits (94), Expect = 0.001
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 22 NGLVGPGGSGAGPGG-GLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSAP 80
N PG +G P GL P +PP A P PE V GE+ S L+ +G P
Sbjct: 105 NHFCSPGQAGVSPPRKGLAPCSPPSVAPTPVEPED---VAQGEELSSGS-LSEQGTGQTP 160
Query: 81 MITCRVCQSLINV------EGKM-HQHVVKCGVCN 108
TC CQ +++ +G++ H+H +C C+
Sbjct: 161 SSTCAACQQHVHLVQRYLADGRLYHRHCFRCRRCS 195
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 40.0 bits (92), Expect = 0.002
Identities = 25/58 (43%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 20 GGNGLVGPGGSGAGPG---GGLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYSPLTSP 74
GG+ GP G G P G TP PP G PP P G P PG+ PP PL P
Sbjct: 213 GGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPP--PGQVLPP--PLAGP 266
Score = 35.4 bits (80), Expect = 0.055
Identities = 25/73 (34%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 17 GGAGGNGLVGPGGSGA-------GPGGGLTPSAPPYGAAFP--PFPEGHPAVLPGEDPPP 67
G G G GP G + G G G P A P G FP P G P P PP
Sbjct: 178 GQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPP 237
Query: 68 YSPLTSPDSGSAP 80
PL P P
Sbjct: 238 RPPLGPPGPPGPP 250
Score = 32.0 bits (71), Expect = 0.61
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 24 LVGPGGSGAGPGGGLTPSAPPYGAA-FPPFPEGHPAVLPGEDPPPYSPLTSPDSGSAP 80
L GP G P + P+G P P G P +PG PPP P P G P
Sbjct: 263 LAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPP--PPQQGPPP 318
Score = 29.6 bits (65), Expect = 3.0
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 23 GLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVLPGE-------DPPPYSPLTSPD 75
G + PG PG G P PP PP P P PG PPP+ P P
Sbjct: 290 GPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLP--GPP 347
Query: 76 SGSAP 80
G+ P
Sbjct: 348 PGAPP 352
Score = 29.3 bits (64), Expect = 3.9
Identities = 27/73 (36%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 9 PLLSEPIDGGAGGNGLVGPGGS-GAGPGGGLTPSAPP----YG-AAFPPFPEGHPAVLPG 62
PL P G ++ PG G P G L P PP YG PP P+ P PG
Sbjct: 262 PLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPG 321
Query: 63 EDPP-PYSPLTSP 74
PP P PL P
Sbjct: 322 PFPPRPPGPLGPP 334
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 40.0 bits (92), Expect = 0.002
Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLT-PSAPPYGAAFPPFPEGHPAVLPGEDPPPYSP 70
GG GG G GPGG G GPGGGL SA P+ HPA + P P
Sbjct: 161 GGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLP 215
Score = 33.1 bits (74), Expect = 0.27
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 16 DGGAGGNGLVGPGGSGAGPGGG 37
DG GG G G GG G GPGGG
Sbjct: 145 DGPGGGGGPGGGGGPGGGPGGG 166
Score = 31.6 bits (70), Expect = 0.80
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 17 GGAGGNGLVGPGGSGAGP-GGGLTPSAPPYGAAFPPFPEGH 56
GG GG G GG G GP GGG P G + P P H
Sbjct: 154 GGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPHPHMH 194
Score = 29.6 bits (65), Expect = 3.0
Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 20 GGNGLVGPGGSGAGPGGGLTPSAPPYG 46
GG GPGG G GPGGG P P G
Sbjct: 140 GGGAHDGPGGGG-GPGGGGGPGGGPGG 165
Score = 28.1 bits (61), Expect = 8.8
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 17 GGAGGNGLVGPGGSGAGPGGG 37
GG GG G GPGG G GGG
Sbjct: 151 GGPGGGG--GPGGGPGGGGGG 169
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 39.7 bits (91), Expect = 0.003
Identities = 18/35 (51%), Positives = 19/35 (54%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPP 51
GG GG G G GG G G GGG + PYG PP
Sbjct: 453 GGGGGGGGGGGGGGGGGGGGGEAGAVAPYGYTRPP 487
Score = 30.0 bits (66), Expect = 2.3
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYSPLTSPD 75
GG GG G GG G G GGG GA P P L G++ S T+PD
Sbjct: 451 GGGGGGG----GGGGGGGGGGGGGGGGEAGAVAPYGYTRPPQGLAGQE----SDFTAPD 501
>gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
Length = 390
Score = 39.7 bits (91), Expect = 0.003
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG--GGLTPSAPPYGAAFPPFPEGHPAVLPG 62
G+ P+ S PI GP + PG GG++P Y + +PP P G+P P
Sbjct: 136 GDEPPVFSRPISASYPPYQATGPPNTSYMPGMPGGISP----YPSGYPPNPSGYPG-CPY 190
Query: 63 EDPPPYSPLTSPDSGSAPMIT 83
PY TS S P +T
Sbjct: 191 PPGGPYPATTSSQYPSQPPVT 211
>gi|6912752 zinc finger protein 281 [Homo sapiens]
Length = 895
Score = 39.7 bits (91), Expect = 0.003
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYSPLTSPDS 76
GG G +G G GG G+G GGG S+ P FP+G V+ PP + T P
Sbjct: 12 GGTGSSGGSGSGGGGSGGGGG-GGSSGRRAEMEPTFPQG--MVMFNHRLPPVTSFTRPAG 68
Query: 77 GSAPMITCRVCQS 89
+AP C + S
Sbjct: 69 SAAPPPQCVLSSS 81
>gi|21389357 MAPK-interacting and spindle-stabilizing protein
[Homo sapiens]
Length = 245
Score = 39.7 bits (91), Expect = 0.003
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 13 EPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYSPLT 72
+P G G N P + P G L PSA P F P P G +P PPP P
Sbjct: 29 QPPQGWPGSNPWNNPSAPSSVPSG-LPPSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAP 87
Query: 73 SPDSG 77
P SG
Sbjct: 88 FPPSG 92
>gi|40805843 K(lysine) acetyltransferase 2B [Homo sapiens]
Length = 832
Score = 39.3 bits (90), Expect = 0.004
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 23 GLVGPGGSGAGPGGGLTPSA-PPYGAAFPPF-PEGHPAVLPGEDPPPYSPLTS 73
G GPGG GAG G G P A PP AA PP P+G P P T+
Sbjct: 5 GGAGPGGCGAGAGAGAGPGALPPQPAALPPAPPQGSPCAAAAGGSGACGPATA 57
Score = 33.1 bits (74), Expect = 0.27
Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 17 GGAGGNGLVGPGGSGAGPGG-----GLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYSPL 71
GGAG G G+GAGPG P APP G+ G A P
Sbjct: 5 GGAGPGGCGAGAGAGAGPGALPPQPAALPPAPPQGSPCAAAAGGSGACGPATAVAAAGTA 64
Query: 72 TSPDSGSAPMITCRVCQ 88
P G + I + Q
Sbjct: 65 EGPGGGGSARIAVKKAQ 81
Score = 28.1 bits (61), Expect = 8.8
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 8 SPLLSEPIDGGAGGNGLVGP------GGSGAGPGGG 37
+P P AGG+G GP G+ GPGGG
Sbjct: 35 APPQGSPCAAAAGGSGACGPATAVAAAGTAEGPGGG 70
>gi|13129048 oligonucleotide/oligosaccharide-binding fold containing
2B [Homo sapiens]
Length = 211
Score = 39.3 bits (90), Expect = 0.004
Identities = 24/68 (35%), Positives = 26/68 (38%)
Query: 2 AADGERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVLP 61
A+ P + P GNGL P G G GP TPS PP P PA P
Sbjct: 133 ASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPP 192
Query: 62 GEDPPPYS 69
G P S
Sbjct: 193 GPSSNPVS 200
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 38.9 bits (89), Expect = 0.005
Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 27/112 (24%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY---------GAA------ 48
G P S P G GG + PG SG PG G P PP AA
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 49 --FPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 91
PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 32.0 bits (71), Expect = 0.61
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 6 ERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAF----PPFPEGHPAVLP 61
++ P L P G GPG G GPG + P+G PP P G P +P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPG-PGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP 273
Query: 62 GEDP--PP 67
G+ P PP
Sbjct: 274 GQPPGGPP 281
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 38.9 bits (89), Expect = 0.005
Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 27/112 (24%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY---------GAA------ 48
G P S P G GG + PG SG PG G P PP AA
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 49 --FPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 91
PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 32.0 bits (71), Expect = 0.61
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 6 ERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAF----PPFPEGHPAVLP 61
++ P L P G GPG G GPG + P+G PP P G P +P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPG-PGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP 273
Query: 62 GEDP--PP 67
G+ P PP
Sbjct: 274 GQPPGGPP 281
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 38.9 bits (89), Expect = 0.005
Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 27/112 (24%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY---------GAA------ 48
G P S P G GG + PG SG PG G P PP AA
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 49 --FPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 91
PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 32.0 bits (71), Expect = 0.61
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 6 ERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAF----PPFPEGHPAVLP 61
++ P L P G GPG G GPG + P+G PP P G P +P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPG-PGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP 273
Query: 62 GEDP--PP 67
G+ P PP
Sbjct: 274 GQPPGGPP 281
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 38.9 bits (89), Expect = 0.005
Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 27/112 (24%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY---------GAA------ 48
G P S P G GG + PG SG PG G P PP AA
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 49 --FPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 91
PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 32.0 bits (71), Expect = 0.61
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 6 ERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAF----PPFPEGHPAVLP 61
++ P L P G GPG G GPG + P+G PP P G P +P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPG-PGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP 273
Query: 62 GEDP--PP 67
G+ P PP
Sbjct: 274 GQPPGGPP 281
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 38.9 bits (89), Expect = 0.005
Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 27/112 (24%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY---------GAA------ 48
G P S P G GG + PG SG PG G P PP AA
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 49 --FPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 91
PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 32.0 bits (71), Expect = 0.61
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 6 ERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAF----PPFPEGHPAVLP 61
++ P L P G GPG G GPG + P+G PP P G P +P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPG-PGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP 273
Query: 62 GEDP--PP 67
G+ P PP
Sbjct: 274 GQPPGGPP 281
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 38.9 bits (89), Expect = 0.005
Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 27/112 (24%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY---------GAA------ 48
G P S P G GG + PG SG PG G P PP AA
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 49 --FPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 91
PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 32.0 bits (71), Expect = 0.61
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 6 ERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAF----PPFPEGHPAVLP 61
++ P L P G GPG G GPG + P+G PP P G P +P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPG-PGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP 273
Query: 62 GEDP--PP 67
G+ P PP
Sbjct: 274 GQPPGGPP 281
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 38.9 bits (89), Expect = 0.005
Identities = 37/112 (33%), Positives = 42/112 (37%), Gaps = 27/112 (24%)
Query: 5 GERSPLLSEPIDGGAGGNGLVGPGGSGAGPG-GGLTPSAPPY---------GAA------ 48
G P S P G GG + PG SG PG G P PP AA
Sbjct: 243 GPAPPNYSRP--HGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 49 --FPPFPEGHPAVLPGEDPPPYSPLTSPDSGS-------APMITCRVCQSLI 91
PP P G P+ P PP SP+ P + S APM+ QS I
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRI 352
Score = 32.0 bits (71), Expect = 0.61
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 6 ERSPLLSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAF----PPFPEGHPAVLP 61
++ P L P G GPG G GPG + P+G PP P G P +P
Sbjct: 215 QQMPTLPPPSVSATGPGPGPGPG-PGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP 273
Query: 62 GEDP--PP 67
G+ P PP
Sbjct: 274 GQPPGGPP 281
>gi|165905613 ring finger and KH domain containing 1 [Homo
sapiens]
Length = 651
Score = 38.9 bits (89), Expect = 0.005
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 11 LSEPIDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYSP 70
L +P GG GG G G G +G PG G APP PEG P PPP
Sbjct: 5 LGQPDGGGGGGGGGGGVGAAGEDPGPG---PAPP--------PEGAQEAAPAPRPPP--- 50
Query: 71 LTSPDSGSAPM 81
PD +A +
Sbjct: 51 --EPDDAAAAL 59
Score = 33.9 bits (76), Expect = 0.16
Identities = 29/81 (35%), Positives = 30/81 (37%), Gaps = 17/81 (20%)
Query: 17 GGAGGNGLVGPGGSGAGPGGGLTPSA-----PPYGAAFPPFPEGHPAVLPG--------- 62
GGAG G G GA GG A PP G P PAV PG
Sbjct: 72 GGAGDTDEEGAAGDGAAAAGGADGGAAPEPVPPDGPEAGAPPTLAPAVAPGSLPLLDPNA 131
Query: 63 EDPPPYSPLTSPD---SGSAP 80
PPP P SP +G AP
Sbjct: 132 SPPPPPPPRPSPPDVFAGFAP 152
>gi|49087132 sal-like 2 [Homo sapiens]
Length = 1007
Score = 38.5 bits (88), Expect = 0.007
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 21 GNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSAP 80
G+ LV G+ AG GGGL ++P GA P PE PA P PPP P GS
Sbjct: 123 GHFLVAATGTAAGGGGGLILASPKLGATPLP-PESTPAPPPPPPPPP-----PPGVGSGH 176
Query: 81 MITCRVCQSL-INVEGKMHQHVVKCGVCNE 109
+ + + L + + ++HQ + +C +
Sbjct: 177 LNIPLILEELRVLQQRQIHQMQMTEQICRQ 206
>gi|6912446 potassium voltage-gated channel, subfamily H, member 4
[Homo sapiens]
Length = 1017
Score = 37.7 bits (86), Expect = 0.011
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 7 RSPLLSEPIDGGAGGNG-----LVGPGGSGAGPGGGLTPSAPPYGAAFPPF-PEGHPAVL 60
RSP LS+P G + + SGA PGGG P P P P G L
Sbjct: 702 RSPRLSQPRSESLGSSSDKTLPSITEAESGAEPGGGPRPRRPLLLPNLSPARPRGSLVSL 761
Query: 61 PGEDPPPYSPLTSPDS 76
GE+ PP+S L S S
Sbjct: 762 LGEELPPFSALVSSPS 777
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 37.7 bits (86), Expect = 0.011
Identities = 40/155 (25%), Positives = 53/155 (34%), Gaps = 14/155 (9%)
Query: 34 PGGGLTPSAPPYGAAFPPFPEGHPAVL-PGEDPPPYS--PLTSPDSGSAPMITCRVCQSL 90
PG GL P PP A P P HP + PG PY+ PLT P C +
Sbjct: 2343 PGLGLRPQEPPPAQALAPSPPSHPDIFRPGSYTDPYAQPPLTPRPQPPPPESCCALPPRS 2402
Query: 91 INVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCK-- 148
+ + + +P+ P + CP + R P PY +
Sbjct: 2403 LPSDPFSRVPASPQSQSSSQSPLTPRPLSAE-AFCP-------SPVTPRFQSPDPYSRPP 2454
Query: 149 -RIINLGPVHPGPLSPEPQPMGVRVICGHCKNTFL 182
R + P P P PQP V G +T L
Sbjct: 2455 SRPQSRDPFAPLHKPPRPQPPEVAFKAGSLAHTSL 2489
>gi|7662494 Kruppel-like factor 15 [Homo sapiens]
Length = 416
Score = 37.7 bits (86), Expect = 0.011
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 39/139 (28%)
Query: 27 PGGSGAG----PGGGLTPSAP-PYGAAFPPFPEGHPAVLPGEDPPPYSPLTSPDSGSAPM 81
PGG+ AG PGGG TP P P P P V P SP +P++
Sbjct: 196 PGGASAGGAQGPGGGPTPDGPIPVLLQIQPVP-----VKQESGTGPASPGQAPEN----- 245
Query: 82 ITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVRCPCNCLLICKVTSQRIA 141
+V Q L+N++G+ + + P N K+VR
Sbjct: 246 --VKVAQLLVNIQGQTF------ALVPQVVPSSNLNLPSKFVR----------------I 281
Query: 142 CPRPYCKRIINLGPVHPGP 160
P P + + GP+ PGP
Sbjct: 282 APVPIAAKPVGSGPLGPGP 300
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 37.4 bits (85), Expect = 0.014
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 15 IDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYSP 70
+ G G G GP G AGP G L+ S P G PP P GH PG PP P
Sbjct: 626 LQGTQGVPGAPGPPGE-AGPRGELSVSTPVPGPPGPPGPPGH----PGPQGPPGIP 676
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 37.4 bits (85), Expect = 0.014
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 15 IDGGAGGNGLVGPGGSGAGPGGGLTPSAPPYGAAFPPFPEGHPAVLPGEDPPPYSP 70
+ G G G GP G AGP G L+ S P G PP P GH PG PP P
Sbjct: 626 LQGTQGVPGAPGPPGE-AGPRGELSVSTPVPGPPGPPGPPGH----PGPQGPPGIP 676
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.142 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,579,825
Number of Sequences: 37866
Number of extensions: 1022288
Number of successful extensions: 12188
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 539
Number of HSP's that attempted gapping in prelim test: 7513
Number of HSP's gapped (non-prelim): 3924
length of query: 277
length of database: 18,247,518
effective HSP length: 101
effective length of query: 176
effective length of database: 14,423,052
effective search space: 2538457152
effective search space used: 2538457152
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.