TMEM55B 5703

Name: TMEM55B	Sequence: fasta or formatted (277aa)		NCBI GI: 154816184
Description: transmembrane protein 55B isoform 2		Not currently referenced in the text
Other entries for this name: alt prot {284aa} transmembrane protein 55B isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.3 23 2 C cysteine 6.9 19 2 D aspartate 1.8 5 1 E glutamate 2.9 8 1 F phenylalanine 2.9 8 1 G glycine 11.6 32 3 H histidine 2.9 8 1 I isoleucine 4.7 13 2 K lysine 4.3 12 2 L leucine 8.7 24 3 M methionine 1.8 5 1 N asparagine 2.9 8 1 P proline 11.9 33 3 Q glutamine 1.8 5 1 R arginine 6.1 17 2 S serine 5.4 15 2 T threonine 4.3 12 1 V valine 6.5 18 2 W tryptophan 1.4 4 1 Y tyrosine 2.9 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 transmembrane protein 55B isoform 2 TMEM55B 0.988 transmembrane protein 55B isoform 1 TMEM55A 0.468 transmembrane protein 55A COL9A3 0.035 alpha 3 type IX collagen SMARCD1 0.028 SWI/SNF-related matrix-associated actin-dependent r... SMARCD1 0.028 SWI/SNF-related matrix-associated actin-dependent r... BSN 0.028 bassoon protein MICALL1 0.028 molecule interacting with Rab13 CPSF6 0.026 cleavage and polyadenylation specific factor 6, 68 ... POU4F1 0.026 POU domain, class 4, transcription factor 1 AR 0.026 androgen receptor isoform 1 TSG101 0.026 tumor susceptibility gene 101 ZNF281 0.026 zinc finger protein 281 MAPK1IP1L 0.026 MAPK-interacting and spindle-stabilizing protein [Ho... KAT2B 0.024 K(lysine) acetyltransferase 2B OBFC2B 0.024 oligonucleotide/oligosaccharide-binding fold contain... SMARCA4 0.024 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.024 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.024 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.024 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.024 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.024 SWI/SNF-related matrix-associated actin-dependent r... SMARCA4 0.024 SWI/SNF-related matrix-associated actin-dependent re... MEX3D 0.024 ring finger and KH domain containing 1 SALL2 0.024 sal-like 2 KCNH4 0.023 potassium voltage-gated channel, subfamily H, member ... MLL2 0.023 myeloid/lymphoid or mixed-lineage leukemia 2 KLF15 0.023 Kruppel-like factor 15 COL4A3 0.021 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.021 alpha 3 type IV collagen isoform 4 precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.