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Search of human proteins with 154426302
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154426302 early undifferentiated retina and lens isoform 2
[Homo sapiens]
(296 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154426302 early undifferentiated retina and lens isoform 2 [H... 611 e-175
gi|154426331 early undifferentiated retina and lens isoform 1 [H... 607 e-174
gi|154426270 early undifferentiated retina and lens isoform 3 [H... 465 e-131
gi|44917604 SLIT-ROBO Rho GTPase activating protein 1 [Homo sapi... 34 0.18
gi|38176300 nestin [Homo sapiens] 32 0.51
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 32 0.51
gi|109715852 chromosome 6 open reading frame 204 isoform a [Homo... 32 0.51
gi|213021162 hypothetical protein LOC163882 isoform 2 [Homo sapi... 32 0.67
gi|213021160 hypothetical protein LOC163882 isoform 1 [Homo sapi... 32 0.67
gi|60685227 SECIS binding protein 2-like [Homo sapiens] 32 0.87
gi|4507963 zinc finger protein 37 homolog [Homo sapiens] 32 0.87
gi|203096856 kinesin family member 7 [Homo sapiens] 31 1.1
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 31 1.1
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 31 1.5
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof... 31 1.5
gi|40217801 hypothetical protein LOC79864 isoform 2 [Homo sapiens] 30 1.9
gi|40217799 hypothetical protein LOC79864 isoform 1 [Homo sapiens] 30 1.9
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 30 2.5
gi|126723390 ankyrin repeat domain 24 [Homo sapiens] 30 2.5
gi|81295809 pericentrin [Homo sapiens] 30 3.3
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 29 4.3
gi|115430110 hypothetical protein LOC153643 [Homo sapiens] 29 4.3
gi|117956403 rabaptin, RAB GTPase binding effector protein 2 [Ho... 29 4.3
gi|28269672 serologically defined colon cancer antigen 8 [Homo s... 29 4.3
gi|118498362 kinectin 1 isoform b [Homo sapiens] 29 5.7
gi|118498356 kinectin 1 isoform a [Homo sapiens] 29 5.7
gi|118498368 kinectin 1 isoform c [Homo sapiens] 29 5.7
gi|33620775 kinectin 1 isoform a [Homo sapiens] 29 5.7
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s... 29 5.7
gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo sa... 29 5.7
>gi|154426302 early undifferentiated retina and lens isoform 2 [Homo
sapiens]
Length = 296
Score = 611 bits (1576), Expect = e-175
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD 60
MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD
Sbjct: 1 MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD 60
Query: 61 CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL 120
CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL
Sbjct: 61 CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL 120
Query: 121 FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA 180
FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA
Sbjct: 121 FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA 180
Query: 181 TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQ 240
TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQ
Sbjct: 181 TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQ 240
Query: 241 IQVFEELTHQVQEKDSLASQLHVRHVAIEQLLKNCSKLPCLQVGRTGMKSHLPINN 296
IQVFEELTHQVQEKDSLASQLHVRHVAIEQLLKNCSKLPCLQVGRTGMKSHLPINN
Sbjct: 241 IQVFEELTHQVQEKDSLASQLHVRHVAIEQLLKNCSKLPCLQVGRTGMKSHLPINN 296
>gi|154426331 early undifferentiated retina and lens isoform 1 [Homo
sapiens]
Length = 297
Score = 607 bits (1564), Expect = e-174
Identities = 296/297 (99%), Positives = 296/297 (99%), Gaps = 1/297 (0%)
Query: 1 MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD 60
MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD
Sbjct: 1 MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD 60
Query: 61 CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL 120
CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL
Sbjct: 61 CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL 120
Query: 121 FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA 180
FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA
Sbjct: 121 FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA 180
Query: 181 TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQ 240
TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQ
Sbjct: 181 TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQ 240
Query: 241 IQ-VFEELTHQVQEKDSLASQLHVRHVAIEQLLKNCSKLPCLQVGRTGMKSHLPINN 296
IQ VFEELTHQVQEKDSLASQLHVRHVAIEQLLKNCSKLPCLQVGRTGMKSHLPINN
Sbjct: 241 IQEVFEELTHQVQEKDSLASQLHVRHVAIEQLLKNCSKLPCLQVGRTGMKSHLPINN 297
>gi|154426270 early undifferentiated retina and lens isoform 3 [Homo
sapiens]
Length = 221
Score = 465 bits (1197), Expect = e-131
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD 60
MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD
Sbjct: 1 MNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNIEGVPKSDLLHTKSLRGHKD 60
Query: 61 CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL 120
CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL
Sbjct: 61 CFEKYHLIANQGCPRSKLSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHL 120
Query: 121 FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA 180
FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA
Sbjct: 121 FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGA 180
Query: 181 TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREE 221
TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREE
Sbjct: 181 TLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREE 221
>gi|44917604 SLIT-ROBO Rho GTPase activating protein 1 [Homo
sapiens]
Length = 1085
Score = 33.9 bits (76), Expect = 0.18
Identities = 42/204 (20%), Positives = 82/204 (40%), Gaps = 52/204 (25%)
Query: 124 RHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGATLC 183
R K +++++ +++SQV + A+ ++ Q+ LEQ+ T+ + +LQD
Sbjct: 6 RFKKDKEIIAEYESQVKEIRAQLVE---------QQKCLEQQ--TEMRVQLLQDLQDFFR 54
Query: 184 RNSVL-WPHSHN------------------QAQKKEETISSPEANVQTQHPHYSREELNS 224
+ + + +S N Q KK++ + SP RE +
Sbjct: 55 KKAEIETEYSRNLEKLAERFMAKTRSTKDHQQYKKDQNLLSPVNCWYLLLNQVRRESKDH 114
Query: 225 MTLGEVEQLNAKLLQQIQVFEELTHQVQEKDSLASQLH---------------------V 263
TL ++ LN +++ +Q+ E+ T ++ +A QLH
Sbjct: 115 ATLSDI-YLNNVIMRFMQISEDSTRMFKKSKEIAFQLHEDLMKVLNELYTVMKTYHMYHA 173
Query: 264 RHVAIEQLLKNCSKLPCLQVGRTG 287
++ E LK K Q+GR+G
Sbjct: 174 ESISAESKLKEAEKQEEKQIGRSG 197
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 32.3 bits (72), Expect = 0.51
Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 164 QRENTDFGLSMLQDS-GATLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREEL 222
+ EN +F S+ ++S A + + + Q+ ET+ SPE TQ P ++ EE+
Sbjct: 800 ENENQEFLKSLKEESVEAVKSLETEILESLKSAGQENLETLKSPE----TQAPLWTPEEI 855
Query: 223 NSMTLGEVEQLNAKLLQQIQVFEELTHQVQEKD 255
N + +E+ + L+ ++V +E ++E++
Sbjct: 856 NQGAMNPLEKEIQEPLESVEVNQETFRLLEEEN 888
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 32.3 bits (72), Expect = 0.51
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 190 PHSHNQAQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLN---AKLLQQIQVFEE 246
PH H + K++ +P + R S + G +QL AKL QQ+Q ++
Sbjct: 189 PHVHYPSCMKDKATQTPSC--WAEEGAEKRSHQRSASWGSADQLKEQIAKLRQQLQRSKQ 246
Query: 247 LTHQVQEKDSLASQLHVRHVAI 268
+ +EKD S LH H+ I
Sbjct: 247 SSRHSKEKDR-QSPLHGNHITI 267
>gi|109715852 chromosome 6 open reading frame 204 isoform a [Homo
sapiens]
Length = 805
Score = 32.3 bits (72), Expect = 0.51
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 195 QAQKKEETISSPEANVQTQHPHYSR-EELNSMTLGEVEQLNAKLLQQIQVFEELTHQVQE 253
Q Q + ++ +P + H E+ + T EV QLN L Q++ +F E E
Sbjct: 419 QPQYENTSLQTPFSEESVSHSQQGEFEQKLASTEKEVLQLNEFLKQRLSLFSE------E 472
Query: 254 KDSLASQLHVRHVAIEQLLKNCSK 277
K L +L R I L K C K
Sbjct: 473 KKKLEEKLKTRDRYISSLKKKCQK 496
>gi|213021162 hypothetical protein LOC163882 isoform 2 [Homo
sapiens]
Length = 616
Score = 32.0 bits (71), Expect = 0.67
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 200 EETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQ-IQVFEELTHQVQEKDSLA 258
+E + AN Q + P + L S+ GEVEQL+++ L + E Q ++ +
Sbjct: 151 DEEAAEVNANEQPEAPKLVLQSLFSLIRGEVEQLDSRALPLCLHQIAESYFQEEDYEKAM 210
Query: 259 SQLHVRHVAIEQLLKNCSKL 278
+ + + EQLL N S +
Sbjct: 211 KFIQLERLYHEQLLANLSAI 230
>gi|213021160 hypothetical protein LOC163882 isoform 1 [Homo
sapiens]
Length = 725
Score = 32.0 bits (71), Expect = 0.67
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 200 EETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQ-IQVFEELTHQVQEKDSLA 258
+E + AN Q + P + L S+ GEVEQL+++ L + E Q ++ +
Sbjct: 151 DEEAAEVNANEQPEAPKLVLQSLFSLIRGEVEQLDSRALPLCLHQIAESYFQEEDYEKAM 210
Query: 259 SQLHVRHVAIEQLLKNCSKL 278
+ + + EQLL N S +
Sbjct: 211 KFIQLERLYHEQLLANLSAI 230
>gi|60685227 SECIS binding protein 2-like [Homo sapiens]
Length = 1056
Score = 31.6 bits (70), Expect = 0.87
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 154 ISNCTQRILEQRENTDFGLSMLQDSGAT-LCRNSVLWPHSHNQAQKKEETISSPEAN--V 210
I + Q I+ Q D GLSM D+ + +NS +Q I SP A+ +
Sbjct: 565 IDDLPQEIVSQE---DTGLSMPSDTSLSPASQNSPYCMTPVSQGSPASSGIGSPMASSTI 621
Query: 211 QTQHPHYSREELNSMTLGEVEQLNAKLLQQIQVFEELTHQVQEKDSLASQLHVRHV-AIE 269
H RE N + E+++ LLQ++ F+E ++ +KD + ++ R V +
Sbjct: 622 TKIHSKRFREYCNQVLCKEIDECVTLLLQELVSFQE---RIYQKDPVRAKARRRLVMGLR 678
Query: 270 QLLKN--CSKLPCL 281
++ K+ +K+ C+
Sbjct: 679 EVTKHMKLNKIKCV 692
>gi|4507963 zinc finger protein 37 homolog [Homo sapiens]
Length = 630
Score = 31.6 bits (70), Expect = 0.87
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 28/208 (13%)
Query: 70 NQGCPRSKLSKSTYEEVKTILSKKINWI--VQYAQNKDL------------DSDSECSKN 115
+QGCP SK+++ +E + K + + +Q +QNK L + S+C
Sbjct: 99 SQGCP-SKIARPKQKETDGKVQKDDDQLENIQKSQNKLLREVAVKKKTQAKKNGSDCGSL 157
Query: 116 PQHHLFNFRHKPEEKLLPQFDS--QVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLS 173
+ + + +H P +K L +F+S ++ K + D S + + E +++ + LS
Sbjct: 158 GKKNNLHKKHVPSKKRLLKFESCGKILKQNLDLPDHSRNCVKRKSDAAKEHKKSFNHSLS 217
Query: 174 -MLQDSGATLCRNSVLWPHSH----NQAQKKEETISSPEAN------VQTQHPHYSREEL 222
+ T ++ L HS N+ KK + + ++ +QT H L
Sbjct: 218 DTRKGKKQTGKKHEKLSSHSSSDKCNKTGKKHDKLCCHSSSHIKQDKIQTGEKHEKSPSL 277
Query: 223 NSMTLGEVEQLNAKLLQQIQVFEELTHQ 250
+S T E Q K + Q + L+H+
Sbjct: 278 SSSTKHEKPQACVKPYECNQCGKVLSHK 305
>gi|203096856 kinesin family member 7 [Homo sapiens]
Length = 1343
Score = 31.2 bits (69), Expect = 1.1
Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 26/173 (15%)
Query: 109 DSECSKNPQHHL--FNFRHKPEEKLLPQFDSQVPKYSAKWIDGSAGGISNCTQ------- 159
++E SK QH + +H+ ++K+L ++ + K GS G + + Q
Sbjct: 853 EAEMSKR-QHRVKELELKHEQQQKILKIKTEEIAAFQRKRRSGSNGSVVSLEQQQKIEEQ 911
Query: 160 ---------RILEQRENTDFGLSMLQDSGATLCRNSVLWPHSHNQAQKK---EETISSPE 207
++L+QR + L A L + L K+ + ++
Sbjct: 912 KKWLDQEMEKVLQQRRALEELGEELHKREAILAKKEALMQEKTGLESKRLRSSQALNEDI 971
Query: 208 ANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQIQVFEELTHQVQEKDSLASQ 260
V ++ H +E S G++ Q +A+ QQI+ E+ QEKDSL Q
Sbjct: 972 VRVSSRLEHLEKE--LSEKSGQLRQGSAQSQQQIR--GEIDSLRQEKDSLLKQ 1020
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin
(with transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 31.2 bits (69), Expect = 1.1
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 29/162 (17%)
Query: 145 KWIDGSAGGISNCTQRILEQRENTDFGLS----MLQDSGATLCRNSVLWPHSHNQAQKKE 200
K +D A ISN Q I E ++N D S + ++ L + L + +AQ K+
Sbjct: 709 KNLDEKAKEISNLNQLIEEFKKNADNNSSAFTALSEERDQLLSQVKELSMVTELRAQVKQ 768
Query: 201 ETISSPEA--------NVQTQHPHYSREELNSMTL-------------GEVEQLNAKLLQ 239
++ EA QT H + E+++S+++ E++ + + +
Sbjct: 769 LEMNLAEAERQRRLDYESQTAHDNLLTEQIHSLSIEAKSKDVKIEVLQNELDDVQLQFSE 828
Query: 240 QIQVFEELTHQVQEKDS--LASQLHVRHVA--IEQLLKNCSK 277
Q + L Q+Q K+S L VRH++ +E+L + S+
Sbjct: 829 QSTLIRSLQSQLQNKESEVLEGAERVRHISSKVEELSQALSQ 870
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform
1 [Homo sapiens]
Length = 1722
Score = 30.8 bits (68), Expect = 1.5
Identities = 24/105 (22%), Positives = 48/105 (45%)
Query: 176 QDSGATLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNA 235
+D+ L +S L +N E IS+ + ++ + ++ + L VE+ N
Sbjct: 388 EDASQQLIISSALKKSGYNNKHLSLEDISNDKGDIAKNLVDENSKKQEDVLLWLVEESNM 447
Query: 236 KLLQQIQVFEELTHQVQEKDSLASQLHVRHVAIEQLLKNCSKLPC 280
K Q + + QV+ K+S++SQ + +E+ +N +K C
Sbjct: 448 KENVDRQTILKESIQVKLKESISSQTILADFKMEEKNENLAKKRC 492
>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform
2 [Homo sapiens]
Length = 1336
Score = 30.8 bits (68), Expect = 1.5
Identities = 24/105 (22%), Positives = 48/105 (45%)
Query: 176 QDSGATLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNA 235
+D+ L +S L +N E IS+ + ++ + ++ + L VE+ N
Sbjct: 388 EDASQQLIISSALKKSGYNNKHLSLEDISNDKGDIAKNLVDENSKKQEDVLLWLVEESNM 447
Query: 236 KLLQQIQVFEELTHQVQEKDSLASQLHVRHVAIEQLLKNCSKLPC 280
K Q + + QV+ K+S++SQ + +E+ +N +K C
Sbjct: 448 KENVDRQTILKESIQVKLKESISSQTILADFKMEEKNENLAKKRC 492
>gi|40217801 hypothetical protein LOC79864 isoform 2 [Homo sapiens]
Length = 307
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 209 NVQTQHPHYSREELNSMTLGEVEQLNAKLLQQIQVFEELTHQVQ----EKDSLASQLHVR 264
NVQ+ HP +E+L+ ++ +E + L Q+I E +++ E DSL + R
Sbjct: 22 NVQSTHPPLKKEDLHRISKDSLESDSESLTQEIMCHSEFDDRIRGNGMEPDSLDEEESPR 81
Query: 265 HVAIEQLLKNCS 276
++ ++ + S
Sbjct: 82 WGSLHEMEEEAS 93
>gi|40217799 hypothetical protein LOC79864 isoform 1 [Homo sapiens]
Length = 778
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 209 NVQTQHPHYSREELNSMTLGEVEQLNAKLLQQIQVFEELTHQVQ----EKDSLASQLHVR 264
NVQ+ HP +E+L+ ++ +E + L Q+I E +++ E DSL + R
Sbjct: 22 NVQSTHPPLKKEDLHRISKDSLESDSESLTQEIMCHSEFDDRIRGNGMEPDSLDEEESPR 81
Query: 265 HVAIEQLLKNCS 276
++ ++ + S
Sbjct: 82 WGSLHEMEEEAS 93
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 30.0 bits (66), Expect = 2.5
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 201 ETISSPEANVQ----TQHPHYS----REELNSMTLGEVEQLNAKLLQQIQVFEELTHQVQ 252
E +S ++N++ T +S ++E + + ++ A+L Q EL+H+V+
Sbjct: 1240 EALSKSKSNIERTCRTVEDQFSEIKAKDEQQTQLIHDLNMQKARLQTQNG---ELSHRVE 1296
Query: 253 EKDSLASQLHVRHVAIEQLLKNCSK 277
EK+SL SQL A+ Q L+ +
Sbjct: 1297 EKESLISQLTKSKQALTQQLEELKR 1321
>gi|126723390 ankyrin repeat domain 24 [Homo sapiens]
Length = 1146
Score = 30.0 bits (66), Expect = 2.5
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 177 DSGATLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAK 236
DSG +NS+ H A KK + P A++ + EE+ + Q +
Sbjct: 283 DSGEASSQNSMS-SHGKQGAPKKRKA-PPPPASIPMPDDRDAYEEIVRL-----RQERGR 335
Query: 237 LLQQIQVFEELTHQVQEKDSLASQLHVRHVAIEQL 271
LLQ+I+ E+ + Q++ AS LH+ +++L
Sbjct: 336 LLQKIRGLEQHKERRQQESPEASSLHILERQVQEL 370
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 29.6 bits (65), Expect = 3.3
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 211 QTQHPHYSREELNSMTLGEVE-QLNAKLLQQIQVFEELTHQVQEKDSLASQLHVRHVAIE 269
+ Q H RE ++ L E+ L + Q ++ L H+ KD+L +L + H E
Sbjct: 2671 EEQLRHLQRESQSAKALEELRASLETQRAQSSRLCVALKHEQTAKDNLQKELRIEHSRCE 2730
Query: 270 QLL-KNCSKLPCLQVGRTGMKS 290
LL + S+L LQ KS
Sbjct: 2731 ALLAQERSQLSELQKDLAAEKS 2752
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 29.3 bits (64), Expect = 4.3
Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 158 TQRILEQRENTDFGLSMLQDSGATLCRNSVLWPHSHNQAQKKEETISSPEANVQTQHPHY 217
T+R+++ + + + +L + +L + + S ++ K + I + +Q H
Sbjct: 1018 TERLVKGIKERELEIKLLNEKNISLTKQ--IDQLSKDEVGKLTQIIQQKDLEIQALHARI 1075
Query: 218 SREELNSMTLGEVEQLNAKLLQQIQVFEELTHQVQEKDSLASQLH 262
S + +QL A +++ +VF L + +E L ++ H
Sbjct: 1076 SSTSHTQDVVYLQQQLQAYAMEREKVFAVLNEKTRENSHLKTEYH 1120
>gi|115430110 hypothetical protein LOC153643 [Homo sapiens]
Length = 452
Score = 29.3 bits (64), Expect = 4.3
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 78 LSKSTYEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHLFNFRHKPEEKLLPQFDS 137
LS + YEEV+ N ++Y ++ L +EC K Q L +K EEKLL Q S
Sbjct: 302 LSSNLYEEVENNKKWTENQFLKYRKDH-LGHINECLKVLQEKLEKSENKMEEKLL-QLSS 359
Query: 138 QVPKY 142
+V +
Sbjct: 360 KVENF 364
>gi|117956403 rabaptin, RAB GTPase binding effector protein 2 [Homo
sapiens]
Length = 569
Score = 29.3 bits (64), Expect = 4.3
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 211 QTQHPHYSREELNSMTLG---EVEQLNAKLLQQIQVFEELTHQVQEKDSLASQLH 262
Q + H E+L + L E+E+L AKLL+ EEL ++Q + A LH
Sbjct: 141 QMEKAHEDSEKLREIVLPMEKEIEELKAKLLRA----EELIQEIQRRPRHAPSLH 191
>gi|28269672 serologically defined colon cancer antigen 8 [Homo
sapiens]
Length = 713
Score = 29.3 bits (64), Expect = 4.3
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 191 HSHNQAQK----KEETISSPEANVQTQHP-HYSREELNSMTLGEVEQLNAKLLQQIQVFE 245
H + QK +EE + E +++H H +R+E +S+ ++ A+ LQ Q +
Sbjct: 506 HLEQEQQKAALAREECLRLTELLGESEHQLHLTRQEKDSIQQSFSKEAKAQALQAQQREQ 565
Query: 246 ELTHQVQEKDS 256
ELT ++Q+ ++
Sbjct: 566 ELTQKIQQMEA 576
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 28.9 bits (63), Expect = 5.7
Identities = 37/200 (18%), Positives = 80/200 (40%), Gaps = 22/200 (11%)
Query: 83 YEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHLFN-------FRHKPEEKLLPQF 135
+EEV++ + K+ A +DL S +N L + + + E++L+
Sbjct: 497 WEEVQSYIRKRT--AEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLM 554
Query: 136 DSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGATLCRNSVLWPHSHNQ 195
+S+ + + + + Q ILEQ E + A SVL H
Sbjct: 555 ESEQKRVNKE------ESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKV 608
Query: 196 AQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQIQVFEELTHQ----V 251
+K++ I E ++ ++ + +E L +++ +N L ++Q + L ++
Sbjct: 609 IAEKDKQIKQTEDSLASERDRLTSKE---EELKDIQNMNFLLKAEVQKLQALANEQAAAA 665
Query: 252 QEKDSLASQLHVRHVAIEQL 271
E + + ++V+ I L
Sbjct: 666 HELEKMQQSVYVKDDKIRLL 685
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 28.9 bits (63), Expect = 5.7
Identities = 37/200 (18%), Positives = 80/200 (40%), Gaps = 22/200 (11%)
Query: 83 YEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHLFN-------FRHKPEEKLLPQF 135
+EEV++ + K+ A +DL S +N L + + + E++L+
Sbjct: 497 WEEVQSYIRKRT--AEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLM 554
Query: 136 DSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGATLCRNSVLWPHSHNQ 195
+S+ + + + + Q ILEQ E + A SVL H
Sbjct: 555 ESEQKRVNKE------ESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKV 608
Query: 196 AQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQIQVFEELTHQ----V 251
+K++ I E ++ ++ + +E L +++ +N L ++Q + L ++
Sbjct: 609 IAEKDKQIKQTEDSLASERDRLTSKE---EELKDIQNMNFLLKAEVQKLQALANEQAAAA 665
Query: 252 QEKDSLASQLHVRHVAIEQL 271
E + + ++V+ I L
Sbjct: 666 HELEKMQQSVYVKDDKIRLL 685
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 28.9 bits (63), Expect = 5.7
Identities = 37/200 (18%), Positives = 80/200 (40%), Gaps = 22/200 (11%)
Query: 83 YEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHLFN-------FRHKPEEKLLPQF 135
+EEV++ + K+ A +DL S +N L + + + E++L+
Sbjct: 497 WEEVQSYIRKRT--AEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLM 554
Query: 136 DSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGATLCRNSVLWPHSHNQ 195
+S+ + + + + Q ILEQ E + A SVL H
Sbjct: 555 ESEQKRVNKE------ESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKV 608
Query: 196 AQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQIQVFEELTHQ----V 251
+K++ I E ++ ++ + +E L +++ +N L ++Q + L ++
Sbjct: 609 IAEKDKQIKQTEDSLASERDRLTSKE---EELKDIQNMNFLLKAEVQKLQALANEQAAAA 665
Query: 252 QEKDSLASQLHVRHVAIEQL 271
E + + ++V+ I L
Sbjct: 666 HELEKMQQSVYVKDDKIRLL 685
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 28.9 bits (63), Expect = 5.7
Identities = 37/200 (18%), Positives = 80/200 (40%), Gaps = 22/200 (11%)
Query: 83 YEEVKTILSKKINWIVQYAQNKDLDSDSECSKNPQHHLFN-------FRHKPEEKLLPQF 135
+EEV++ + K+ A +DL S +N L + + + E++L+
Sbjct: 497 WEEVQSYIRKRT--AEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLM 554
Query: 136 DSQVPKYSAKWIDGSAGGISNCTQRILEQRENTDFGLSMLQDSGATLCRNSVLWPHSHNQ 195
+S+ + + + + Q ILEQ E + A SVL H
Sbjct: 555 ESEQKRVNKE------ESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKV 608
Query: 196 AQKKEETISSPEANVQTQHPHYSREELNSMTLGEVEQLNAKLLQQIQVFEELTHQ----V 251
+K++ I E ++ ++ + +E L +++ +N L ++Q + L ++
Sbjct: 609 IAEKDKQIKQTEDSLASERDRLTSKE---EELKDIQNMNFLLKAEVQKLQALANEQAAAA 665
Query: 252 QEKDSLASQLHVRHVAIEQL 271
E + + ++V+ I L
Sbjct: 666 HELEKMQQSVYVKDDKIRLL 685
>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
sapiens]
Length = 1235
Score = 28.9 bits (63), Expect = 5.7
Identities = 20/70 (28%), Positives = 26/70 (37%)
Query: 147 IDGSAGGISNCTQRILEQRENTDFGLSMLQDSGATLCRNSVLWPHSHNQAQKKEETISSP 206
+ G G + Q IL Q NT F S D GA+L L H + + T
Sbjct: 479 VAGHPAGSTYSEQDILRQELNTRFLASQSADRGASLGPPPYLRTEFHQHQHQHQHTHQHT 538
Query: 207 EANVQTQHPH 216
+ T PH
Sbjct: 539 HQHTFTPFPH 548
>gi|17864090 autism susceptibility candidate 2 isoform 1 [Homo
sapiens]
Length = 1259
Score = 28.9 bits (63), Expect = 5.7
Identities = 20/70 (28%), Positives = 26/70 (37%)
Query: 147 IDGSAGGISNCTQRILEQRENTDFGLSMLQDSGATLCRNSVLWPHSHNQAQKKEETISSP 206
+ G G + Q IL Q NT F S D GA+L L H + + T
Sbjct: 479 VAGHPAGSTYSEQDILRQELNTRFLASQSADRGASLGPPPYLRTEFHQHQHQHQHTHQHT 538
Query: 207 EANVQTQHPH 216
+ T PH
Sbjct: 539 HQHTFTPFPH 548
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,712,973
Number of Sequences: 37866
Number of extensions: 516237
Number of successful extensions: 1837
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1802
Number of HSP's gapped (non-prelim): 68
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.