Guide to the Human Genome
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Name: BNIP1 Sequence: fasta or formatted (237aa) NCBI GI: 153946405
Description:

BCL2/adenovirus E1B 19kD interacting protein 1 isoform BNIP1-c

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt prot [271aa] BCL2/adenovirus E1B 19kD interacting protein 1 isoform BNIP1-b
alt prot [228aa] BCL2/adenovirus E1B 19kD interacting protein 1 isoform BNIP1
alt prot [194aa] BCL2/adenovirus E1B 19kD interacting protein 1 isoform BNIP1-a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         14           2
 C cysteine            0.8          2           1
 D aspartate           4.2         10           1
 E glutamate           7.2         17           2
 F phenylalanine       5.9         14           3
 G glycine             1.7          4           1
 H histidine           1.7          4           1
 I isoleucine          5.5         13           1
 K lysine              8.0         19           2
 L leucine            13.1         31           3
 M methionine          3.0          7           2
 N asparagine          2.5          6           1
 P proline             2.5          6           1
 Q glutamine           8.4         20           2
 R arginine            5.1         12           2
 S serine              8.4         20           2
 T threonine           8.9         21           2
 V valine              5.1         12           1
 W tryptophan          0.4          1           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   BCL2/adenovirus E1B 19kD interacting protein 1 isof... 
BNIP1                 0.958   BCL2/adenovirus E1B 19kD interacting protein 1 isof...
BNIP1                 0.745   BCL2/adenovirus E1B 19kD interacting protein 1 isof...
BNIP1                 0.706   BCL2/adenovirus E1B 19kD interacting protein 1 isof...
NCOR2                 0.028   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.028   nuclear receptor co-repressor 2 isoform 1 
TPR                   0.025   nuclear pore complex-associated protein TPR 
SMC4                  0.023   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.023   SMC4 structural maintenance of chromosomes 4-like 1 ...
MYH7                  0.023   myosin, heavy chain 7, cardiac muscle, beta 
MYH13                 0.021   myosin, heavy polypeptide 13, skeletal muscle [Homo...
UACA                  0.021   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.021   uveal autoantigen with coiled-coil domains and ankyr...
KIF5C                 0.021   kinesin family member 5C 
AKAP9                 0.021   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.021   A-kinase anchor protein 9 isoform 3 
DNAH8                 0.021   dynein, axonemal, heavy polypeptide 8 
STK10                 0.019   serine/threonine kinase 10 
C6orf204              0.019   chromosome 6 open reading frame 204 isoform a [Homo...
ROCK2                 0.019   Rho-associated, coiled-coil containing protein kinas...
TCHP                  0.019   trichoplein 
TCHP                  0.019   trichoplein 
GOLGA1                0.019   golgin 97 
TRIML1                0.016   tripartite motif family-like 1 
CEP110                0.016   centrosomal protein 110kDa 
CEP290                0.016   centrosomal protein 290kDa 
MLL2                  0.016   myeloid/lymphoid or mixed-lineage leukemia 2 
GOLGA4                0.016   golgi autoantigen, golgin subfamily a, 4 
TTC14                 0.016   tetratricopeptide repeat domain 14 isoform a 
CNTLN                 0.016   centlein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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